RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 NTN5Q8WTR8 489 aaPredicted RBP9.14□□□□□ -0.95
SYNE1-226ENST00000488376 RMI2Q96E14 147 aa9.14□□□□□ -0.95
SYNE1-226ENST00000488376 TMEM243Q9BU79 118 aa9.14□□□□□ -0.95
SYNE1-226ENST00000488376 PRR34Q9NV39 138 aa9.14□□□□□ -0.95
SYNE1-226ENST00000488376 FAM231BA6NCW3 169 aa9.13□□□□□ -0.95
SYNE1-226ENST00000488376 CRPP02741 224 aa9.13□□□□□ -0.95
SYNE1-226ENST00000488376 RPS10P46783 165 aaKnown RBP9.13□□□□□ -0.95
SYNE1-226ENST00000488376 AMTP48728 403 aa9.13□□□□□ -0.95
SYNE1-226ENST00000488376 Q0VG73 95 aa9.13□□□□□ -0.95
SYNE1-226ENST00000488376 KRTAP26-1Q6PEX3 210 aa9.13□□□□□ -0.95
SYNE1-226ENST00000488376 AMN1Q8IY45 258 aa9.13□□□□□ -0.95
SYNE1-226ENST00000488376 Q8N1X5 172 aa9.13□□□□□ -0.95
SYNE1-226ENST00000488376 FAM30AQ9NZY2 134 aa9.13□□□□□ -0.95
SYNE1-226ENST00000488376 SMKR1H3BMG3 65 aa9.12□□□□□ -0.95
SYNE1-226ENST00000488376 NCR2O95944 276 aa9.12□□□□□ -0.95
SYNE1-226ENST00000488376 RAB4AP20338 218 aa9.12□□□□□ -0.95
SYNE1-226ENST00000488376 COTL1Q14019 142 aa9.12□□□□□ -0.95
SYNE1-226ENST00000488376 BORCS7Q96B45 105 aa9.12□□□□□ -0.95
SYNE1-226ENST00000488376 C1orf43Q9BWL3 253 aa9.12□□□□□ -0.95
SYNE1-226ENST00000488376 TMEM191AQ9H0A3 160 aa9.12□□□□□ -0.95
SYNE1-226ENST00000488376 COX11Q9Y6N1 276 aa9.12□□□□□ -0.95
SYNE1-226ENST00000488376 IGLV10-54A0A075B6I4 117 aa9.11□□□□□ -0.95
SYNE1-226ENST00000488376 SMIM27A0A1W2PRY6 76 aa9.11□□□□□ -0.95
SYNE1-226ENST00000488376 SDHAF1A6NFY7 115 aa9.11□□□□□ -0.95
SYNE1-226ENST00000488376 HLA-DQA1P01909 254 aa9.11□□□□□ -0.95
SYNE1-226ENST00000488376 PKIAP61925 76 aa9.11□□□□□ -0.95
SYNE1-226ENST00000488376 FRZBQ92765 325 aa9.11□□□□□ -0.95
SYNE1-226ENST00000488376 SMDT1Q9H4I9 107 aa9.11□□□□□ -0.95
SYNE1-226ENST00000488376 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.1□□□□□ -0.95
SYNE1-226ENST00000488376 IGKV2-29A2NJV5 120 aaPredicted RBP9.1□□□□□ -0.95
SYNE1-226ENST00000488376 REG3AQ06141 175 aa9.1□□□□□ -0.95
SYNE1-226ENST00000488376 MIAQ16674 131 aa9.1□□□□□ -0.95
SYNE1-226ENST00000488376 NAT8BQ9UHF3 227 aa9.1□□□□□ -0.95
SYNE1-226ENST00000488376 TRBV6-5A0A0K0K1A5 114 aa9.09□□□□□ -0.95
SYNE1-226ENST00000488376 A0A1B0GUV1 79 aa9.09□□□□□ -0.95
SYNE1-226ENST00000488376 TSHBP01222 138 aa9.09□□□□□ -0.95
SYNE1-226ENST00000488376 IFITM2Q01629 132 aa9.09□□□□□ -0.95
SYNE1-226ENST00000488376 RIGQ13278 110 aa9.09□□□□□ -0.95
SYNE1-226ENST00000488376 ABCA13Q86UQ4 5058 aa9.08□□□□□ -0.96
SYNE1-226ENST00000488376 USP17L23D6RBM5 183 aa9.08□□□□□ -0.96
SYNE1-226ENST00000488376 UBE2L6O14933 153 aa9.08□□□□□ -0.96
SYNE1-226ENST00000488376 SMR3BP02814 79 aaPredicted RBP9.08□□□□□ -0.96
SYNE1-226ENST00000488376 TMEM70Q9BUB7 260 aa9.08□□□□□ -0.96
SYNE1-226ENST00000488376 TMEM242Q9NWH2 141 aa9.08□□□□□ -0.96
SYNE1-226ENST00000488376 CAMPP49913 170 aa9.07□□□□□ -0.96
SYNE1-226ENST00000488376 NRACQ8N912 160 aa9.07□□□□□ -0.96
SYNE1-226ENST00000488376 MRAP2Q96G30 205 aa9.07□□□□□ -0.96
SYNE1-226ENST00000488376 ST20Q9HBF5 79 aa9.07□□□□□ -0.96
SYNE1-226ENST00000488376 I3L3M4 83 aa9.06□□□□□ -0.96
SYNE1-226ENST00000488376 APCSP02743 223 aa9.06□□□□□ -0.96
SYNE1-226ENST00000488376 PRSS1P07477 247 aa9.06□□□□□ -0.96
SYNE1-226ENST00000488376 PMCHP20382 165 aa9.06□□□□□ -0.96
SYNE1-226ENST00000488376 POLR2KP53803 58 aaKnown RBP9.06□□□□□ -0.96
SYNE1-226ENST00000488376 RAB14P61106 215 aa9.06□□□□□ -0.96
SYNE1-226ENST00000488376 MRPL51Q4U2R6 128 aaKnown RBP9.06□□□□□ -0.96
SYNE1-226ENST00000488376 MRPL54Q6P161 138 aaKnown RBP9.06□□□□□ -0.96
SYNE1-226ENST00000488376 IGKV3OR2-268A0A0C4DH90 116 aa9.05□□□□□ -0.96
SYNE1-226ENST00000488376 A0A1B0GXF2 115 aa9.05□□□□□ -0.96
SYNE1-226ENST00000488376 FGF6P10767 208 aa9.05□□□□□ -0.96
SYNE1-226ENST00000488376 CLLU1Q5K131 121 aa9.05□□□□□ -0.96
SYNE1-226ENST00000488376 FAM104BQ5XKR9 115 aa9.05□□□□□ -0.96
SYNE1-226ENST00000488376 Q6ZSA8 131 aa9.05□□□□□ -0.96
SYNE1-226ENST00000488376 TRBV27A0A0K0K1C4 114 aa9.04□□□□□ -0.96
SYNE1-226ENST00000488376 ESDP10768 282 aa9.04□□□□□ -0.96
SYNE1-226ENST00000488376 RNASEKQ6P5S7 137 aaKnown RBP9.04□□□□□ -0.96
SYNE1-226ENST00000488376 Q5VSD8 79 aa9.03□□□□□ -0.96
SYNE1-226ENST00000488376 AMMECR1LQ6DCA0 310 aa9.03□□□□□ -0.96
SYNE1-226ENST00000488376 EPM2AB3EWF7 344 aa9.02□□□□□ -0.97
SYNE1-226ENST00000488376 ADCYAP1P18509 176 aa9.02□□□□□ -0.97
SYNE1-226ENST00000488376 HBBP68871 147 aa9.02□□□□□ -0.97
SYNE1-226ENST00000488376 TRAV8-4A0A0B4J246 113 aa9.01□□□□□ -0.97
SYNE1-226ENST00000488376 GAGE12HA6NDE8 117 aa9.01□□□□□ -0.97
SYNE1-226ENST00000488376 SUMO2P61956 95 aaKnown RBP9.01□□□□□ -0.97
SYNE1-226ENST00000488376 A0A1B0GW15 77 aa9□□□□□ -0.97
SYNE1-226ENST00000488376 D6R8Y8 96 aa9□□□□□ -0.97
SYNE1-226ENST00000488376 H7C423 109 aa9□□□□□ -0.97
SYNE1-226ENST00000488376 SLPIP03973 132 aa9□□□□□ -0.97
SYNE1-226ENST00000488376 C14orf177Q52M58 125 aa9□□□□□ -0.97
SYNE1-226ENST00000488376 VCYO14598 125 aa8.99□□□□□ -0.97
SYNE1-226ENST00000488376 TNFRSF6BO95407 300 aa8.99□□□□□ -0.97
SYNE1-226ENST00000488376 NPYP01303 97 aa8.99□□□□□ -0.97
SYNE1-226ENST00000488376 CKS2P33552 79 aa8.99□□□□□ -0.97
SYNE1-226ENST00000488376 SCXQ7RTU7 201 aa8.99□□□□□ -0.97
SYNE1-226ENST00000488376 C15orf56Q8N910 161 aa8.99□□□□□ -0.97
SYNE1-226ENST00000488376 CHCHD10Q8WYQ3 142 aaPredicted RBP8.99□□□□□ -0.97
SYNE1-226ENST00000488376 C7orf77A4D0Y5 90 aa8.98□□□□□ -0.97
SYNE1-226ENST00000488376 PPP1R2P9O14990 202 aa8.98□□□□□ -0.97
SYNE1-226ENST00000488376 ZNF25P17030 456 aaPredicted RBP8.98□□□□□ -0.97
SYNE1-226ENST00000488376 FCER1GP30273 86 aa8.98□□□□□ -0.97
SYNE1-226ENST00000488376 PNRC1Q12796 327 aaPredicted RBP8.98□□□□□ -0.97
SYNE1-226ENST00000488376 MRPL52Q86TS9 123 aaKnown RBP8.98□□□□□ -0.97
SYNE1-226ENST00000488376 FAT1Q14517 4588 aa8.98□□□□□ -0.97
SYNE1-226ENST00000488376 TRBV24-1A0A075B6N3 115 aa8.97□□□□□ -0.97
SYNE1-226ENST00000488376 hDV102S1A0JD36 115 aa8.97□□□□□ -0.97
SYNE1-226ENST00000488376 LINC00862A6NCI5 91 aa8.97□□□□□ -0.97
SYNE1-226ENST00000488376 PANO1I0J062 215 aa8.97□□□□□ -0.97
SYNE1-226ENST00000488376 FOXI1Q12951 378 aa8.97□□□□□ -0.97
SYNE1-226ENST00000488376 RNASE13Q5GAN3 156 aaKnown RBP8.97□□□□□ -0.97
SYNE1-226ENST00000488376 OR5A1Q8NGJ0 315 aa8.97□□□□□ -0.97
SYNE1-226ENST00000488376 CDC42SE2Q9NRR3 84 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms