RNA–Protein interactions for RNA: ENST00000488320.1

COL17A1-207, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 5

Gene COL17A1, Length 626 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-207ENST00000488320 AMMECR1LQ6DCA0 310 aa5.58□□□□□ -1.52
COL17A1-207ENST00000488320 PHF5AQ7RTV0 110 aaKnown RBP5.58□□□□□ -1.52
COL17A1-207ENST00000488320 COX8CQ7Z4L0 72 aa5.58□□□□□ -1.52
COL17A1-207ENST00000488320 FMC1Q96HJ9 113 aa5.58□□□□□ -1.52
COL17A1-207ENST00000488320 A0A087WZ39 114 aa5.57□□□□□ -1.52
COL17A1-207ENST00000488320 M0QY20 66 aa5.57□□□□□ -1.52
COL17A1-207ENST00000488320 MPC2O95563 127 aa5.57□□□□□ -1.52
COL17A1-207ENST00000488320 RPL13AP40429 203 aaKnown RBP5.57□□□□□ -1.52
COL17A1-207ENST00000488320 FOXI1Q12951 378 aa5.57□□□□□ -1.52
COL17A1-207ENST00000488320 COTL1Q14019 142 aa5.57□□□□□ -1.52
COL17A1-207ENST00000488320 C9orf116Q5BN46 136 aaPredicted RBP5.57□□□□□ -1.52
COL17A1-207ENST00000488320 RNASEKQ6P5S7 137 aaKnown RBP5.57□□□□□ -1.52
COL17A1-207ENST00000488320 AP1S3Q96PC3 154 aa5.57□□□□□ -1.52
COL17A1-207ENST00000488320 NKX6-2Q9C056 277 aaPredicted RBP5.57□□□□□ -1.52
COL17A1-207ENST00000488320 SNAI2O43623 268 aa5.56□□□□□ -1.52
COL17A1-207ENST00000488320 FGF6P10767 208 aa5.56□□□□□ -1.52
COL17A1-207ENST00000488320 ATP6V0CP27449 155 aa5.56□□□□□ -1.52
COL17A1-207ENST00000488320 XCL1P47992 114 aa5.56□□□□□ -1.52
COL17A1-207ENST00000488320 SUMO4Q6EEV6 95 aa5.56□□□□□ -1.52
COL17A1-207ENST00000488320 ISOC2Q96AB3 205 aa5.56□□□□□ -1.52
COL17A1-207ENST00000488320 FAM74A7A6NL05 159 aa5.55□□□□□ -1.52
COL17A1-207ENST00000488320 OR5AL1P0C617 328 aa5.55□□□□□ -1.52
COL17A1-207ENST00000488320 BCL2P10415 239 aa5.55□□□□□ -1.52
COL17A1-207ENST00000488320 SERF2P84101 59 aa5.55□□□□□ -1.52
COL17A1-207ENST00000488320 RASL11AQ6T310 242 aa5.55□□□□□ -1.52
COL17A1-207ENST00000488320 PGLYRP4Q96LB8 373 aa5.55□□□□□ -1.52
COL17A1-207ENST00000488320 SSBP4Q9BWG4 385 aaPredicted RBP5.55□□□□□ -1.52
COL17A1-207ENST00000488320 FSIP2Q5CZC0 6907 aa5.55□□□□□ -1.52
COL17A1-207ENST00000488320 LTAP01374 205 aa5.54□□□□□ -1.52
COL17A1-207ENST00000488320 CXCL1P09341 107 aa5.54□□□□□ -1.52
COL17A1-207ENST00000488320 CAMPP49913 170 aa5.54□□□□□ -1.52
COL17A1-207ENST00000488320 RPL18AQ02543 176 aaKnown RBP5.54□□□□□ -1.52
COL17A1-207ENST00000488320 MZT2BQ6NZ67 158 aa5.54□□□□□ -1.52
COL17A1-207ENST00000488320 PSMG3Q9BT73 122 aaPredicted RBP5.54□□□□□ -1.52
COL17A1-207ENST00000488320 NIT2Q9NQR4 276 aa5.54□□□□□ -1.52
COL17A1-207ENST00000488320 TNFSF18Q9UNG2 199 aa5.54□□□□□ -1.52
COL17A1-207ENST00000488320 IGLV4-69A0A075B6H9 119 aa5.53□□□□□ -1.52
COL17A1-207ENST00000488320 CCL25O15444 150 aa5.53□□□□□ -1.52
COL17A1-207ENST00000488320 KRTAP1-4P0C5Y4 121 aa5.53□□□□□ -1.52
COL17A1-207ENST00000488320 AKR1C3P42330 323 aa5.53□□□□□ -1.52
COL17A1-207ENST00000488320 H2BFSP57053 126 aa5.53□□□□□ -1.52
COL17A1-207ENST00000488320 OR5A1Q8NGJ0 315 aa5.53□□□□□ -1.52
COL17A1-207ENST00000488320 STOML3Q8TAV4 291 aa5.53□□□□□ -1.52
COL17A1-207ENST00000488320 TSKUQ8WUA8 353 aa5.53□□□□□ -1.52
COL17A1-207ENST00000488320 CCDC32Q9BV29 185 aa5.53□□□□□ -1.52
COL17A1-207ENST00000488320 MLST8Q9BVC4 326 aa5.53□□□□□ -1.52
COL17A1-207ENST00000488320 TPPP3Q9BW30 176 aa5.53□□□□□ -1.52
COL17A1-207ENST00000488320 CDIP1Q9H305 208 aa5.53□□□□□ -1.52
COL17A1-207ENST00000488320 IGKV2D-29A0A075B6S2 120 aaPredicted RBP5.52□□□□□ -1.53
COL17A1-207ENST00000488320 IGKV2-29A2NJV5 120 aaPredicted RBP5.52□□□□□ -1.53
COL17A1-207ENST00000488320 LINC01547P58512 204 aaPredicted RBP5.52□□□□□ -1.53
COL17A1-207ENST00000488320 SS18Q15532 418 aa5.52□□□□□ -1.53
COL17A1-207ENST00000488320 CST9LP1Q5W188 147 aa5.52□□□□□ -1.53
COL17A1-207ENST00000488320 EIF5AL1Q6IS14 154 aaKnown RBP5.52□□□□□ -1.53
COL17A1-207ENST00000488320 TMEM101Q96IK0 257 aa5.52□□□□□ -1.53
COL17A1-207ENST00000488320 BTF3L4Q96K17 158 aa5.52□□□□□ -1.53
COL17A1-207ENST00000488320 CAMK2N2Q96S95 79 aa5.52□□□□□ -1.53
COL17A1-207ENST00000488320 CARHSP1Q9Y2V2 147 aaKnown RBP5.52□□□□□ -1.53
COL17A1-207ENST00000488320 CTXND1A0A1B0GTU2 59 aa5.51□□□□□ -1.53
COL17A1-207ENST00000488320 LINC00959A0A1B0GUT2 108 aa5.51□□□□□ -1.53
COL17A1-207ENST00000488320 SSNA1O43805 119 aa5.51□□□□□ -1.53
COL17A1-207ENST00000488320 APOMO95445 188 aa5.51□□□□□ -1.53
COL17A1-207ENST00000488320 MALP21145 153 aa5.51□□□□□ -1.53
COL17A1-207ENST00000488320 LCE3BQ5TA77 95 aa5.51□□□□□ -1.53
COL17A1-207ENST00000488320 NUP35Q8NFH5 326 aa5.51□□□□□ -1.53
COL17A1-207ENST00000488320 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP5.5□□□□□ -1.53
COL17A1-207ENST00000488320 H7C423 109 aa5.5□□□□□ -1.53
COL17A1-207ENST00000488320 MEF2BQ02080 365 aaPredicted RBP5.5□□□□□ -1.53
COL17A1-207ENST00000488320 BAGE2Q86Y30 109 aa5.5□□□□□ -1.53
COL17A1-207ENST00000488320 ENKURQ8TC29 256 aa5.5□□□□□ -1.53
COL17A1-207ENST00000488320 OPRPNQ99935 248 aaPredicted RBP5.5□□□□□ -1.53
COL17A1-207ENST00000488320 MED28Q9H204 178 aa5.5□□□□□ -1.53
COL17A1-207ENST00000488320 APCSP02743 223 aa5.49□□□□□ -1.53
COL17A1-207ENST00000488320 S100A9P06702 114 aaKnown RBP5.49□□□□□ -1.53
COL17A1-207ENST00000488320 TRGC1P0CF51 173 aa5.49□□□□□ -1.53
COL17A1-207ENST00000488320 NTF3P20783 257 aa5.49□□□□□ -1.53
COL17A1-207ENST00000488320 UBE2BP63146 152 aa5.49□□□□□ -1.53
COL17A1-207ENST00000488320 ZNF726P1Q15940 193 aa5.49□□□□□ -1.53
COL17A1-207ENST00000488320 CD164L2Q6UWJ8 174 aa5.49□□□□□ -1.53
COL17A1-207ENST00000488320 Q6ZNX1 250 aa5.49□□□□□ -1.53
COL17A1-207ENST00000488320 OR2D3Q8NGH3 330 aa5.49□□□□□ -1.53
COL17A1-207ENST00000488320 INMT-MINDY4F8WBC2 141 aa5.48□□□□□ -1.53
COL17A1-207ENST00000488320 ZNF25P17030 456 aaPredicted RBP5.48□□□□□ -1.53
COL17A1-207ENST00000488320 KRTAP11-1Q8IUC1 163 aa5.48□□□□□ -1.53
COL17A1-207ENST00000488320 TCEAL7Q9BRU2 100 aa5.48□□□□□ -1.53
COL17A1-207ENST00000488320 FAM168BA1KXE4 195 aa5.47□□□□□ -1.53
COL17A1-207ENST00000488320 BCL2L11O43521 198 aa5.47□□□□□ -1.53
COL17A1-207ENST00000488320 NCR2O95944 276 aa5.47□□□□□ -1.53
COL17A1-207ENST00000488320 FHITP49789 147 aa5.47□□□□□ -1.53
COL17A1-207ENST00000488320 DEFA1P59665 94 aa5.47□□□□□ -1.53
COL17A1-207ENST00000488320 AKR1C8PQ5T2L2 129 aa5.47□□□□□ -1.53
COL17A1-207ENST00000488320 FAM19A5Q7Z5A7 132 aaPredicted RBP5.47□□□□□ -1.53
COL17A1-207ENST00000488320 TYMSOSQ8TAI1 123 aa5.47□□□□□ -1.53
COL17A1-207ENST00000488320 C2orf48Q96LS8 159 aa5.47□□□□□ -1.53
COL17A1-207ENST00000488320 RETNLBQ9BQ08 111 aa5.47□□□□□ -1.53
COL17A1-207ENST00000488320 MAP1LC3B2A6NCE7 125 aa5.46□□□□□ -1.54
COL17A1-207ENST00000488320 COX7A2LO14548 114 aa5.46□□□□□ -1.54
COL17A1-207ENST00000488320 H2AFB1P0C5Y9 115 aa5.46□□□□□ -1.54
COL17A1-207ENST00000488320 PMCHP20382 165 aa5.46□□□□□ -1.54
COL17A1-207ENST00000488320 RPS20P60866 119 aaKnown RBP5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms