RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 RASL11AQ6T310 242 aa9.42□□□□□ -0.9
MCF2L-228ENST00000487354 IGKV3OR2-268A0A0C4DH90 116 aa9.41□□□□□ -0.9
MCF2L-228ENST00000487354 S100A9P06702 114 aaKnown RBP9.41□□□□□ -0.9
MCF2L-228ENST00000487354 LINC00526Q96FQ7 95 aa9.41□□□□□ -0.9
MCF2L-228ENST00000487354 FAT4Q6V0I7 4981 aa9.4□□□□□ -0.9
MCF2L-228ENST00000487354 AMTP48728 403 aa9.4□□□□□ -0.9
MCF2L-228ENST00000487354 DEFA1P59665 94 aa9.4□□□□□ -0.9
MCF2L-228ENST00000487354 MED28Q9H204 178 aa9.4□□□□□ -0.9
MCF2L-228ENST00000487354 NIT2Q9NQR4 276 aa9.4□□□□□ -0.9
MCF2L-228ENST00000487354 FXYD6-FXYD2A0A087WZ82 144 aa9.39□□□□□ -0.91
MCF2L-228ENST00000487354 UBE2L6O14933 153 aa9.39□□□□□ -0.91
MCF2L-228ENST00000487354 GIPP09681 153 aaPredicted RBP9.39□□□□□ -0.91
MCF2L-228ENST00000487354 FER1L6-AS1Q8NA97 138 aa9.39□□□□□ -0.91
MCF2L-228ENST00000487354 LINC00474Q9P2X8 69 aa9.39□□□□□ -0.91
MCF2L-228ENST00000487354 COTL1Q14019 142 aa9.38□□□□□ -0.91
MCF2L-228ENST00000487354 Q6ZNX1 250 aa9.38□□□□□ -0.91
MCF2L-228ENST00000487354 TPPP3Q9BW30 176 aa9.38□□□□□ -0.91
MCF2L-228ENST00000487354 C19orf71A6NCJ1 209 aa9.36□□□□□ -0.91
MCF2L-228ENST00000487354 NTF3P20783 257 aa9.36□□□□□ -0.91
MCF2L-228ENST00000487354 RPL35P42766 123 aaKnown RBP9.36□□□□□ -0.91
MCF2L-228ENST00000487354 CACNG7P62955 275 aa9.36□□□□□ -0.91
MCF2L-228ENST00000487354 TMUB2Q71RG4 321 aa9.36□□□□□ -0.91
MCF2L-228ENST00000487354 MBD3L1Q8WWY6 194 aa9.36□□□□□ -0.91
MCF2L-228ENST00000487354 CARD19Q96LW7 228 aa9.36□□□□□ -0.91
MCF2L-228ENST00000487354 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.35□□□□□ -0.91
MCF2L-228ENST00000487354 A0A1B0GV50 99 aa9.35□□□□□ -0.91
MCF2L-228ENST00000487354 A0A1W2PNN7 141 aa9.35□□□□□ -0.91
MCF2L-228ENST00000487354 IGKV2-29A2NJV5 120 aaPredicted RBP9.35□□□□□ -0.91
MCF2L-228ENST00000487354 PTTG1IPP53801 180 aa9.35□□□□□ -0.91
MCF2L-228ENST00000487354 PSORS1C2Q9UIG4 136 aa9.35□□□□□ -0.91
MCF2L-228ENST00000487354 FAM231BA6NCW3 169 aa9.34□□□□□ -0.91
MCF2L-228ENST00000487354 GATD1Q8NB37 220 aa9.34□□□□□ -0.91
MCF2L-228ENST00000487354 OR2D3Q8NGH3 330 aa9.34□□□□□ -0.91
MCF2L-228ENST00000487354 SFT2D1Q8WV19 159 aa9.34□□□□□ -0.91
MCF2L-228ENST00000487354 TRAV26-2A0A0B4J265 109 aa9.33□□□□□ -0.92
MCF2L-228ENST00000487354 PFDN1O60925 122 aa9.33□□□□□ -0.92
MCF2L-228ENST00000487354 FGF6P10767 208 aa9.33□□□□□ -0.92
MCF2L-228ENST00000487354 XCL1P47992 114 aa9.33□□□□□ -0.92
MCF2L-228ENST00000487354 LYZL1Q6UWQ5 148 aa9.33□□□□□ -0.92
MCF2L-228ENST00000487354 PRR26Q8N8Z3 221 aa9.33□□□□□ -0.92
MCF2L-228ENST00000487354 C11orf52Q96A22 123 aa9.33□□□□□ -0.92
MCF2L-228ENST00000487354 IGHV1-58A0A0C4DH39 117 aa9.32□□□□□ -0.92
MCF2L-228ENST00000487354 TRGC1P0CF51 173 aa9.32□□□□□ -0.92
MCF2L-228ENST00000487354 CENPWQ5EE01 88 aa9.32□□□□□ -0.92
MCF2L-228ENST00000487354 OR5A1Q8NGJ0 315 aa9.32□□□□□ -0.92
MCF2L-228ENST00000487354 FAM213BQ8TBF2 198 aa9.32□□□□□ -0.92
MCF2L-228ENST00000487354 RPL39LQ96EH5 51 aaKnown RBP9.32□□□□□ -0.92
MCF2L-228ENST00000487354 LINC00959A0A1B0GUT2 108 aa9.31□□□□□ -0.92
MCF2L-228ENST00000487354 CCL25O15444 150 aa9.31□□□□□ -0.92
MCF2L-228ENST00000487354 CTRLP40313 264 aa9.31□□□□□ -0.92
MCF2L-228ENST00000487354 RPS20P60866 119 aaKnown RBP9.31□□□□□ -0.92
MCF2L-228ENST00000487354 SYCNQ0VAF6 134 aa9.31□□□□□ -0.92
MCF2L-228ENST00000487354 LCE2AQ5TA79 106 aaPredicted RBP9.31□□□□□ -0.92
MCF2L-228ENST00000487354 AMMECR1LQ6DCA0 310 aa9.31□□□□□ -0.92
MCF2L-228ENST00000487354 RNASEKQ6P5S7 137 aaKnown RBP9.31□□□□□ -0.92
MCF2L-228ENST00000487354 ZNF664Q8N3J9 261 aa9.31□□□□□ -0.92
MCF2L-228ENST00000487354 PKIGQ9Y2B9 76 aa9.31□□□□□ -0.92
MCF2L-228ENST00000487354 F2Z2F3 143 aa9.3□□□□□ -0.92
MCF2L-228ENST00000487354 H7C423 109 aa9.3□□□□□ -0.92
MCF2L-228ENST00000487354 ARPC5O15511 151 aa9.3□□□□□ -0.92
MCF2L-228ENST00000487354 NCR2O95944 276 aa9.3□□□□□ -0.92
MCF2L-228ENST00000487354 KCNRGQ8N5I3 272 aa9.3□□□□□ -0.92
MCF2L-228ENST00000487354 CNFNQ9BYD5 112 aa9.3□□□□□ -0.92
MCF2L-228ENST00000487354 TRBV20OR9-2A0A075B6H5 130 aa9.29□□□□□ -0.92
MCF2L-228ENST00000487354 GAGE2BQ13066 116 aa9.29□□□□□ -0.92
MCF2L-228ENST00000487354 C9orf62Q8N4C0 152 aa9.29□□□□□ -0.92
MCF2L-228ENST00000487354 KRTAP9-6A0A140TA67 174 aa9.28□□□□□ -0.92
MCF2L-228ENST00000487354 RAB19A4D1S5 217 aa9.28□□□□□ -0.92
MCF2L-228ENST00000487354 APCSP02743 223 aa9.28□□□□□ -0.92
MCF2L-228ENST00000487354 BCL2P10415 239 aa9.28□□□□□ -0.92
MCF2L-228ENST00000487354 ZNF25P17030 456 aaPredicted RBP9.28□□□□□ -0.92
MCF2L-228ENST00000487354 CAMPP49913 170 aa9.28□□□□□ -0.92
MCF2L-228ENST00000487354 CCL20P78556 96 aa9.28□□□□□ -0.92
MCF2L-228ENST00000487354 KRTAP11-1Q8IUC1 163 aa9.28□□□□□ -0.92
MCF2L-228ENST00000487354 LOC107984640A0A0U1RRK4 108 aa9.27□□□□□ -0.93
MCF2L-228ENST00000487354 MT-ND6P03923 174 aa9.27□□□□□ -0.93
MCF2L-228ENST00000487354 KRTAP1-4P0C5Y4 121 aa9.27□□□□□ -0.93
MCF2L-228ENST00000487354 FOXA3P55318 350 aaPredicted RBP9.27□□□□□ -0.93
MCF2L-228ENST00000487354 C9orf116Q5BN46 136 aaPredicted RBP9.27□□□□□ -0.93
MCF2L-228ENST00000487354 C1orf137Q5JT78 98 aa9.27□□□□□ -0.93
MCF2L-228ENST00000487354 PHF5AQ7RTV0 110 aaKnown RBP9.27□□□□□ -0.93
MCF2L-228ENST00000487354 NUP35Q8NFH5 326 aa9.27□□□□□ -0.93
MCF2L-228ENST00000487354 IGLV4-69A0A075B6H9 119 aa9.26□□□□□ -0.93
MCF2L-228ENST00000487354 SDHAF1A6NFY7 115 aa9.26□□□□□ -0.93
MCF2L-228ENST00000487354 UMAD1C9J7I0 102 aa9.26□□□□□ -0.93
MCF2L-228ENST00000487354 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.26□□□□□ -0.93
MCF2L-228ENST00000487354 IFNA1P01562 189 aa9.26□□□□□ -0.93
MCF2L-228ENST00000487354 ESDP10768 282 aa9.26□□□□□ -0.93
MCF2L-228ENST00000487354 MEF2BQ02080 365 aaPredicted RBP9.26□□□□□ -0.93
MCF2L-228ENST00000487354 CD164L2Q6UWJ8 174 aa9.26□□□□□ -0.93
MCF2L-228ENST00000487354 ZNF561-AS1K7EIQ3 104 aa9.25□□□□□ -0.93
MCF2L-228ENST00000487354 SMIM12Q96EX1 92 aa9.25□□□□□ -0.93
MCF2L-228ENST00000487354 SMLR1H3BR10 107 aa9.24□□□□□ -0.93
MCF2L-228ENST00000487354 TSHBP01222 138 aa9.24□□□□□ -0.93
MCF2L-228ENST00000487354 IGLV7-43P04211 117 aa9.24□□□□□ -0.93
MCF2L-228ENST00000487354 H2AFB1P0C5Y9 115 aa9.24□□□□□ -0.93
MCF2L-228ENST00000487354 TWIST1Q15672 202 aa9.24□□□□□ -0.93
MCF2L-228ENST00000487354 CDC42SE2Q9NRR3 84 aa9.24□□□□□ -0.93
MCF2L-228ENST00000487354 XKRY2A2RUG3 117 aa9.23□□□□□ -0.93
MCF2L-228ENST00000487354 H0Y9J4 135 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 94.6 ms