RNA–Protein interactions for RNA: ENST00000485610.5

SMARCD3-212, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best)

Gene SMARCD3, Length 1,480 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-212ENST00000485610 LINC00614P0C842 121 aa12.26□□□□□ -0.45
SMARCD3-212ENST00000485610 NIT1Q86X76 327 aa12.26□□□□□ -0.45
SMARCD3-212ENST00000485610 DEFB104AQ8WTQ1 72 aa12.26□□□□□ -0.45
SMARCD3-212ENST00000485610 CHCHD1Q96BP2 118 aaKnown RBP12.26□□□□□ -0.45
SMARCD3-212ENST00000485610 URB1-AS1Q96HZ7 61 aa12.26□□□□□ -0.45
SMARCD3-212ENST00000485610 APLNQ9ULZ1 77 aa12.26□□□□□ -0.45
SMARCD3-212ENST00000485610 AMTP48728 403 aa12.25□□□□□ -0.45
SMARCD3-212ENST00000485610 LAGE3Q14657 143 aa12.25□□□□□ -0.45
SMARCD3-212ENST00000485610 ORMDL2Q53FV1 153 aa12.25□□□□□ -0.45
SMARCD3-212ENST00000485610 NTM-AS1Q6ZSK4 140 aa12.25□□□□□ -0.45
SMARCD3-212ENST00000485610 TRBV6-8A0A0A6YYG3 113 aa12.24□□□□□ -0.45
SMARCD3-212ENST00000485610 IGHV1-24A0A0C4DH33 117 aa12.24□□□□□ -0.45
SMARCD3-212ENST00000485610 SERF1AO75920 110 aa12.24□□□□□ -0.45
SMARCD3-212ENST00000485610 CSMD3Q7Z407 3707 aa12.23□□□□□ -0.45
SMARCD3-212ENST00000485610 DYNC2H1Q8NCM8 4307 aaKnown RBP12.23□□□□□ -0.45
SMARCD3-212ENST00000485610 TRBV25-1A0A075B6N4 114 aa12.23□□□□□ -0.45
SMARCD3-212ENST00000485610 NDUFA6P56556 154 aa12.23□□□□□ -0.45
SMARCD3-212ENST00000485610 LINC00310P59036 64 aa12.23□□□□□ -0.45
SMARCD3-212ENST00000485610 COA6Q5JTJ3 125 aaKnown RBP12.23□□□□□ -0.45
SMARCD3-212ENST00000485610 LYPD5Q6UWN5 251 aa12.23□□□□□ -0.45
SMARCD3-212ENST00000485610 LELP1Q5T871 98 aa12.22□□□□□ -0.45
SMARCD3-212ENST00000485610 TMEM243Q9BU79 118 aa12.22□□□□□ -0.45
SMARCD3-212ENST00000485610 C3orf84H3BNL1 204 aa12.21□□□□□ -0.45
SMARCD3-212ENST00000485610 ESRGQ1W209 222 aa12.21□□□□□ -0.45
SMARCD3-212ENST00000485610 CHCHD7Q9BUK0 85 aa12.21□□□□□ -0.45
SMARCD3-212ENST00000485610 HSBP1O75506 76 aa12.21□□□□□ -0.46
SMARCD3-212ENST00000485610 S100A6P06703 90 aa12.21□□□□□ -0.46
SMARCD3-212ENST00000485610 ESDP10768 282 aa12.21□□□□□ -0.46
SMARCD3-212ENST00000485610 CCL18P55774 89 aa12.2□□□□□ -0.46
SMARCD3-212ENST00000485610 TENM2Q9NT68 2774 aa12.2□□□□□ -0.46
SMARCD3-212ENST00000485610 TMA7Q9Y2S6 64 aaKnown RBP12.2□□□□□ -0.46
SMARCD3-212ENST00000485610 G0S2P27469 103 aa12.19□□□□□ -0.46
SMARCD3-212ENST00000485610 C20orf203Q8NBC4 194 aa12.19□□□□□ -0.46
SMARCD3-212ENST00000485610 CHCHD5Q9BSY4 110 aa12.19□□□□□ -0.46
SMARCD3-212ENST00000485610 TRAV8-6A0A0B4J262 113 aa12.18□□□□□ -0.46
SMARCD3-212ENST00000485610 BTF3P20290 206 aaKnown RBP12.18□□□□□ -0.46
SMARCD3-212ENST00000485610 CASC10Q5T4H9 136 aa12.18□□□□□ -0.46
SMARCD3-212ENST00000485610 C2orf66Q6UXQ4 117 aa12.18□□□□□ -0.46
SMARCD3-212ENST00000485610 TMEM18Q96B42 140 aa12.18□□□□□ -0.46
SMARCD3-212ENST00000485610 CYSLTR1Q9Y271 337 aa12.18□□□□□ -0.46
SMARCD3-212ENST00000485610 MRPS16Q9Y3D3 137 aaKnown RBP12.18□□□□□ -0.46
SMARCD3-212ENST00000485610 STARD9Q9P2P6 4700 aa12.17□□□□□ -0.46
SMARCD3-212ENST00000485610 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.17□□□□□ -0.46
SMARCD3-212ENST00000485610 IGKV2-29A2NJV5 120 aaPredicted RBP12.17□□□□□ -0.46
SMARCD3-212ENST00000485610 H7C423 109 aa12.17□□□□□ -0.46
SMARCD3-212ENST00000485610 UBE2L6O14933 153 aa12.17□□□□□ -0.46
SMARCD3-212ENST00000485610 NUPR1O60356 82 aa12.17□□□□□ -0.46
SMARCD3-212ENST00000485610 HBDP02042 147 aa12.17□□□□□ -0.46
SMARCD3-212ENST00000485610 LINC00588Q9Y4M8 146 aa12.17□□□□□ -0.46
SMARCD3-212ENST00000485610 LINC01549A6NIU2 74 aa12.16□□□□□ -0.46
SMARCD3-212ENST00000485610 PMCHL1Q16048 86 aa12.16□□□□□ -0.46
SMARCD3-212ENST00000485610 A0A096LNJ9 63 aa12.15□□□□□ -0.46
SMARCD3-212ENST00000485610 PKIAP61925 76 aa12.15□□□□□ -0.46
SMARCD3-212ENST00000485610 RPL39P62891 51 aaKnown RBP12.15□□□□□ -0.46
SMARCD3-212ENST00000485610 UBE2DNLQ8IWF7 75 aa12.15□□□□□ -0.46
SMARCD3-212ENST00000485610 SMAGPQ0VAQ4 97 aa12.14□□□□□ -0.47
SMARCD3-212ENST00000485610 GAGE6Q13070 117 aa12.14□□□□□ -0.47
SMARCD3-212ENST00000485610 FAM19A2Q8N3H0 131 aa12.14□□□□□ -0.47
SMARCD3-212ENST00000485610 TOMM6Q96B49 74 aa12.14□□□□□ -0.47
SMARCD3-212ENST00000485610 UPK3BQ9BT76 320 aa12.14□□□□□ -0.47
SMARCD3-212ENST00000485610 WFDC10BQ8IUB3 73 aa12.14□□□□□ -0.47
SMARCD3-212ENST00000485610 FGF6P10767 208 aa12.13□□□□□ -0.47
SMARCD3-212ENST00000485610 AMMECR1LQ6DCA0 310 aa12.13□□□□□ -0.47
SMARCD3-212ENST00000485610 MRPL52Q86TS9 123 aaKnown RBP12.13□□□□□ -0.47
SMARCD3-212ENST00000485610 TIMM21Q9BVV7 248 aa12.13□□□□□ -0.47
SMARCD3-212ENST00000485610 SPANXA1Q9NS26 97 aa12.13□□□□□ -0.47
SMARCD3-212ENST00000485610 UBE2D4Q9Y2X8 147 aa12.13□□□□□ -0.47
SMARCD3-212ENST00000485610 ZNF25P17030 456 aaPredicted RBP12.12□□□□□ -0.47
SMARCD3-212ENST00000485610 C5orf52A6NGY3 159 aa12.11□□□□□ -0.47
SMARCD3-212ENST00000485610 TMEM262E9PQX1 116 aa12.11□□□□□ -0.47
SMARCD3-212ENST00000485610 SNRPEP62304 92 aaKnown RBP12.11□□□□□ -0.47
SMARCD3-212ENST00000485610 PDZD11Q5EBL8 140 aa12.11□□□□□ -0.47
SMARCD3-212ENST00000485610 A0A087WX48 190 aa12.1□□□□□ -0.47
SMARCD3-212ENST00000485610 MPV17L2Q567V2 206 aa12.1□□□□□ -0.47
SMARCD3-212ENST00000485610 ERASQ7Z444 233 aa12.1□□□□□ -0.47
SMARCD3-212ENST00000485610 HIST3H2BBQ8N257 126 aa12.1□□□□□ -0.47
SMARCD3-212ENST00000485610 SCGB3A1Q96QR1 104 aa12.1□□□□□ -0.47
SMARCD3-212ENST00000485610 TIMM17AQ99595 171 aa12.1□□□□□ -0.47
SMARCD3-212ENST00000485610 PYGO1Q9Y3Y4 419 aa12.1□□□□□ -0.47
SMARCD3-212ENST00000485610 CSDC2Q9Y534 153 aaKnown RBP12.1□□□□□ -0.47
SMARCD3-212ENST00000485610 A0A1B0GUV1 79 aa12.09□□□□□ -0.47
SMARCD3-212ENST00000485610 S100A2P29034 98 aa12.09□□□□□ -0.47
SMARCD3-212ENST00000485610 RBX1P62877 108 aa12.09□□□□□ -0.47
SMARCD3-212ENST00000485610 DGAT2L7PQ6IED9 249 aa12.09□□□□□ -0.47
SMARCD3-212ENST00000485610 OR5A1Q8NGJ0 315 aa12.09□□□□□ -0.47
SMARCD3-212ENST00000485610 TMEM101Q96IK0 257 aa12.09□□□□□ -0.47
SMARCD3-212ENST00000485610 IGIPA6NJ69 53 aa12.08□□□□□ -0.47
SMARCD3-212ENST00000485610 SIVA1O15304 175 aa12.08□□□□□ -0.47
SMARCD3-212ENST00000485610 LEPROTL1O95214 131 aa12.08□□□□□ -0.47
SMARCD3-212ENST00000485610 NPSP0C0P6 89 aa12.08□□□□□ -0.47
SMARCD3-212ENST00000485610 LINC01556Q5JQF7 62 aa12.08□□□□□ -0.47
SMARCD3-212ENST00000485610 PACRGQ96M98 296 aaPredicted RBP12.08□□□□□ -0.47
SMARCD3-212ENST00000485610 PLECQ15149 4684 aaKnown RBP12.08□□□□□ -0.48
SMARCD3-212ENST00000485610 ATP5LO75964 103 aa12.08□□□□□ -0.48
SMARCD3-212ENST00000485610 DNAH10OSP0CZ25 163 aa12.08□□□□□ -0.48
SMARCD3-212ENST00000485610 Q8N976 141 aa12.08□□□□□ -0.48
SMARCD3-212ENST00000485610 TMEM141Q96I45 108 aa12.08□□□□□ -0.48
SMARCD3-212ENST00000485610 HSPB8Q9UJY1 196 aa12.08□□□□□ -0.48
SMARCD3-212ENST00000485610 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.07□□□□□ -0.48
SMARCD3-212ENST00000485610 MRPS36P82909 103 aaKnown RBP12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms