RNA–Protein interactions for RNA: ENST00000485055.5

CCDC39-205, Transcript of coiled-coil domain containing 39, humanhuman

TSL 1 (best)

Gene CCDC39, Length 2,874 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-205ENST00000485055 BPIFA4PQ86YQ2 179 aa3.71□□□□□ -1.82
CCDC39-205ENST00000485055 TRAV3A0A0B4J244 114 aa3.7□□□□□ -1.82
CCDC39-205ENST00000485055 LOC100996750A0A140TA64 210 aa3.7□□□□□ -1.82
CCDC39-205ENST00000485055 SYNGR2O43760 224 aa3.7□□□□□ -1.82
CCDC39-205ENST00000485055 CFDP00746 253 aaPredicted RBP3.7□□□□□ -1.82
CCDC39-205ENST00000485055 IGHV3-11P01762 117 aa3.7□□□□□ -1.82
CCDC39-205ENST00000485055 OR5AC1P0C628 307 aa3.7□□□□□ -1.82
CCDC39-205ENST00000485055 KRTAP4-6Q9BYQ5 205 aa3.7□□□□□ -1.82
CCDC39-205ENST00000485055 IL36BQ9NZH7 164 aa3.7□□□□□ -1.82
CCDC39-205ENST00000485055 A0A0J9YXY3 114 aa3.7□□□□□ -1.82
CCDC39-205ENST00000485055 C3orf85A0A1B0GTC6 90 aa3.7□□□□□ -1.82
CCDC39-205ENST00000485055 KRTAP16-1A8MUX0 517 aa3.7□□□□□ -1.82
CCDC39-205ENST00000485055 ERHP84090 104 aaKnown RBP3.7□□□□□ -1.82
CCDC39-205ENST00000485055 C10orf55Q5SWW7 151 aa3.7□□□□□ -1.82
CCDC39-205ENST00000485055 HYLS1Q96M11 299 aa3.7□□□□□ -1.82
CCDC39-205ENST00000485055 TTTY13Q9BZ97 58 aa3.7□□□□□ -1.82
CCDC39-205ENST00000485055 AGPAT4-IT1Q9H0P7 198 aa3.7□□□□□ -1.82
CCDC39-205ENST00000485055 Q9H3A6 140 aa3.7□□□□□ -1.82
CCDC39-205ENST00000485055 TPT1P13693 172 aaKnown RBP3.69□□□□□ -1.82
CCDC39-205ENST00000485055 HIST1H2BOP23527 126 aa3.69□□□□□ -1.82
CCDC39-205ENST00000485055 HIST1H2BBP33778 126 aa3.69□□□□□ -1.82
CCDC39-205ENST00000485055 SNCAP37840 140 aa3.69□□□□□ -1.82
CCDC39-205ENST00000485055 HIST1H2BDP58876 126 aa3.69□□□□□ -1.82
CCDC39-205ENST00000485055 HIST1H2BCP62807 126 aa3.69□□□□□ -1.82
CCDC39-205ENST00000485055 HIST2H2BEQ16778 126 aa3.69□□□□□ -1.82
CCDC39-205ENST00000485055 LINC01554Q52M75 96 aa3.69□□□□□ -1.82
CCDC39-205ENST00000485055 HIST2H2BFQ5QNW6 126 aaPredicted RBP3.69□□□□□ -1.82
CCDC39-205ENST00000485055 ADM2Q7Z4H4 148 aa3.69□□□□□ -1.82
CCDC39-205ENST00000485055 HIST1H2BHQ93079 126 aa3.69□□□□□ -1.82
CCDC39-205ENST00000485055 HIST1H2BNQ99877 126 aa3.69□□□□□ -1.82
CCDC39-205ENST00000485055 HIST1H2BMQ99879 126 aa3.69□□□□□ -1.82
CCDC39-205ENST00000485055 NAA60Q9H7X0 242 aa3.69□□□□□ -1.82
CCDC39-205ENST00000485055 A0A1W2PS18 150 aa3.69□□□□□ -1.82
CCDC39-205ENST00000485055 TRGC1P0CF51 173 aa3.69□□□□□ -1.82
CCDC39-205ENST00000485055 TMUB2Q71RG4 321 aa3.69□□□□□ -1.82
CCDC39-205ENST00000485055 DSCR8Q96T75 97 aa3.69□□□□□ -1.82
CCDC39-205ENST00000485055 ZNF355PQ9NSJ1 428 aa3.69□□□□□ -1.82
CCDC39-205ENST00000485055 RYR2Q92736 4967 aa3.69□□□□□ -1.82
CCDC39-205ENST00000485055 NUPR2A6NF83 97 aa3.69□□□□□ -1.82
CCDC39-205ENST00000485055 PEX7O00628 323 aa3.69□□□□□ -1.82
CCDC39-205ENST00000485055 ZNF324O75467 553 aaPredicted RBP3.69□□□□□ -1.82
CCDC39-205ENST00000485055 SRP19P09132 144 aaKnown RBP3.69□□□□□ -1.82
CCDC39-205ENST00000485055 LINC01547P58512 204 aaPredicted RBP3.69□□□□□ -1.82
CCDC39-205ENST00000485055 CXCL6P80162 114 aa3.69□□□□□ -1.82
CCDC39-205ENST00000485055 KLF9Q13886 244 aaPredicted RBP3.69□□□□□ -1.82
CCDC39-205ENST00000485055 SS18Q15532 418 aa3.69□□□□□ -1.82
CCDC39-205ENST00000485055 LINC00526Q96FQ7 95 aa3.69□□□□□ -1.82
CCDC39-205ENST00000485055 TNCP24821 2201 aa3.68□□□□□ -1.82
CCDC39-205ENST00000485055 NOTCH1P46531 2555 aa3.68□□□□□ -1.82
CCDC39-205ENST00000485055 NAP1L6A6NFF2 107 aa3.68□□□□□ -1.82
CCDC39-205ENST00000485055 C9JCJ5 164 aa3.68□□□□□ -1.82
CCDC39-205ENST00000485055 HLA-DRB4P13762 266 aa3.68□□□□□ -1.82
CCDC39-205ENST00000485055 SCXQ7RTU7 201 aa3.68□□□□□ -1.82
CCDC39-205ENST00000485055 TEN1Q86WV5 123 aa3.68□□□□□ -1.82
CCDC39-205ENST00000485055 DYNLRB2Q8TF09 96 aa3.68□□□□□ -1.82
CCDC39-205ENST00000485055 HLA-DRB4X5D2U9 266 aa3.68□□□□□ -1.82
CCDC39-205ENST00000485055 IGLV4-3A0A075B6K6 122 aa3.68□□□□□ -1.82
CCDC39-205ENST00000485055 TRAV1-1A0A0B4J248 108 aa3.68□□□□□ -1.82
CCDC39-205ENST00000485055 UQCRQO14949 82 aa3.68□□□□□ -1.82
CCDC39-205ENST00000485055 CD3DP04234 171 aa3.68□□□□□ -1.82
CCDC39-205ENST00000485055 PRM2P04554 102 aa3.68□□□□□ -1.82
CCDC39-205ENST00000485055 S100ZQ8WXG8 99 aa3.68□□□□□ -1.82
CCDC39-205ENST00000485055 C2orf50Q96LR7 162 aa3.68□□□□□ -1.82
CCDC39-205ENST00000485055 HIST1H2BLQ99880 126 aa3.68□□□□□ -1.82
CCDC39-205ENST00000485055 SMCO4Q9NRQ5 59 aa3.68□□□□□ -1.82
CCDC39-205ENST00000485055 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP3.68□□□□□ -1.82
CCDC39-205ENST00000485055 SACSQ9NZJ4 4579 aa3.67□□□□□ -1.82
CCDC39-205ENST00000485055 TRAV12-2A0A075B6T6 113 aa3.67□□□□□ -1.82
CCDC39-205ENST00000485055 TRAV14DV4A0A0A6YYC5 116 aa3.67□□□□□ -1.82
CCDC39-205ENST00000485055 PTHLHP12272 177 aa3.67□□□□□ -1.82
CCDC39-205ENST00000485055 DEFA4P12838 97 aa3.67□□□□□ -1.82
CCDC39-205ENST00000485055 COA6Q5JTJ3 125 aaKnown RBP3.67□□□□□ -1.82
CCDC39-205ENST00000485055 TRGV9Q99603 122 aa3.67□□□□□ -1.82
CCDC39-205ENST00000485055 SCRT2Q9NQ03 307 aa3.67□□□□□ -1.82
CCDC39-205ENST00000485055 TGP01266 2768 aa3.67□□□□□ -1.82
CCDC39-205ENST00000485055 TRBV27A0A0K0K1C4 114 aa3.67□□□□□ -1.82
CCDC39-205ENST00000485055 SMIM1B2RUZ4 78 aa3.67□□□□□ -1.82
CCDC39-205ENST00000485055 EPM2AB3EWF7 344 aa3.67□□□□□ -1.82
CCDC39-205ENST00000485055 IGKV1-17P01599 117 aa3.67□□□□□ -1.82
CCDC39-205ENST00000485055 PRH1P02810 166 aa3.67□□□□□ -1.82
CCDC39-205ENST00000485055 CD7P09564 240 aa3.67□□□□□ -1.82
CCDC39-205ENST00000485055 CSN1S1P47710 185 aa3.67□□□□□ -1.82
CCDC39-205ENST00000485055 LINC00310P59036 64 aa3.67□□□□□ -1.82
CCDC39-205ENST00000485055 UBE2BP63146 152 aa3.67□□□□□ -1.82
CCDC39-205ENST00000485055 SUPT4H1P63272 117 aaKnown RBP3.67□□□□□ -1.82
CCDC39-205ENST00000485055 PRR4Q16378 134 aa3.67□□□□□ -1.82
CCDC39-205ENST00000485055 Q56UQ5 140 aa3.67□□□□□ -1.82
CCDC39-205ENST00000485055 NRACQ8N912 160 aa3.67□□□□□ -1.82
CCDC39-205ENST00000485055 PRELID3AQ96N28 172 aa3.67□□□□□ -1.82
CCDC39-205ENST00000485055 V9GYH0 126 aa3.67□□□□□ -1.82
CCDC39-205ENST00000485055 NOTCH3Q9UM47 2321 aa3.66□□□□□ -1.82
CCDC39-205ENST00000485055 C11orf94C9JXX5 98 aa3.66□□□□□ -1.82
CCDC39-205ENST00000485055 SOCS3O14543 225 aa3.66□□□□□ -1.82
CCDC39-205ENST00000485055 DUSP14O95147 198 aaKnown RBP3.66□□□□□ -1.82
CCDC39-205ENST00000485055 FXYD4P59646 89 aa3.66□□□□□ -1.82
CCDC39-205ENST00000485055 EIF5AP63241 154 aaKnown RBP3.66□□□□□ -1.82
CCDC39-205ENST00000485055 IGFL4Q6B9Z1 124 aa3.66□□□□□ -1.82
CCDC39-205ENST00000485055 AMTNQ6UX39 209 aa3.66□□□□□ -1.82
CCDC39-205ENST00000485055 OR10P1Q8NGE3 313 aa3.66□□□□□ -1.82
CCDC39-205ENST00000485055 FAM104AQ969W3 186 aa3.66□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms