RNA–Protein interactions for RNA: ENST00000482065.1

LIMS3-204, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 690 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-204ENST00000482065 GATD1Q8NB37 220 aa9.69□□□□□ -0.86
LIMS3-204ENST00000482065 PGLYRP4Q96LB8 373 aa9.69□□□□□ -0.86
LIMS3-204ENST00000482065 IGLV10-54A0A075B6I4 117 aa9.68□□□□□ -0.86
LIMS3-204ENST00000482065 REG3AQ06141 175 aa9.68□□□□□ -0.86
LIMS3-204ENST00000482065 GFRA4Q9GZZ7 299 aa9.68□□□□□ -0.86
LIMS3-204ENST00000482065 DMBT1Q9UGM3 2413 aaPredicted RBP9.68□□□□□ -0.86
LIMS3-204ENST00000482065 A0A1B0GVG6 124 aa9.67□□□□□ -0.86
LIMS3-204ENST00000482065 PRSS1P07477 247 aa9.67□□□□□ -0.86
LIMS3-204ENST00000482065 COTL1Q14019 142 aa9.67□□□□□ -0.86
LIMS3-204ENST00000482065 FAM231DQ6ZW35 169 aa9.67□□□□□ -0.86
LIMS3-204ENST00000482065 RPL39LQ96EH5 51 aaKnown RBP9.67□□□□□ -0.86
LIMS3-204ENST00000482065 CHAC1Q9BUX1 264 aa9.67□□□□□ -0.86
LIMS3-204ENST00000482065 UBE2L6O14933 153 aa9.66□□□□□ -0.86
LIMS3-204ENST00000482065 AMTP48728 403 aa9.66□□□□□ -0.86
LIMS3-204ENST00000482065 EIF5A2Q9GZV4 153 aaKnown RBP9.66□□□□□ -0.86
LIMS3-204ENST00000482065 A0A1B0GUV1 79 aa9.65□□□□□ -0.86
LIMS3-204ENST00000482065 A8MWL6 223 aa9.65□□□□□ -0.86
LIMS3-204ENST00000482065 SMIM15Q7Z3B0 74 aa9.65□□□□□ -0.86
LIMS3-204ENST00000482065 CIRBP-AS1Q8TBR5 109 aa9.65□□□□□ -0.86
LIMS3-204ENST00000482065 SMIM7Q9BQ49 75 aa9.65□□□□□ -0.86
LIMS3-204ENST00000482065 PLA2G1BP04054 148 aaKnown RBP9.64□□□□□ -0.87
LIMS3-204ENST00000482065 LINC01551Q86U37 167 aa9.64□□□□□ -0.87
LIMS3-204ENST00000482065 FAM210AQ96ND0 272 aa9.64□□□□□ -0.87
LIMS3-204ENST00000482065 ZNF727A8MUV8 499 aa9.63□□□□□ -0.87
LIMS3-204ENST00000482065 SRP19P09132 144 aaKnown RBP9.63□□□□□ -0.87
LIMS3-204ENST00000482065 CT83Q5H943 113 aa9.63□□□□□ -0.87
LIMS3-204ENST00000482065 TRAV8-4A0A0B4J246 113 aa9.62□□□□□ -0.87
LIMS3-204ENST00000482065 GAS8-AS1O95177 125 aa9.62□□□□□ -0.87
LIMS3-204ENST00000482065 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.61□□□□□ -0.87
LIMS3-204ENST00000482065 IGKV3OR2-268A0A0C4DH90 116 aa9.61□□□□□ -0.87
LIMS3-204ENST00000482065 IGKV2-29A2NJV5 120 aaPredicted RBP9.61□□□□□ -0.87
LIMS3-204ENST00000482065 SDHAF1A6NFY7 115 aa9.61□□□□□ -0.87
LIMS3-204ENST00000482065 HIGD1CA8MV81 97 aa9.61□□□□□ -0.87
LIMS3-204ENST00000482065 NDUFS6O75380 124 aaKnown RBP9.61□□□□□ -0.87
LIMS3-204ENST00000482065 DGAT2L7PQ6IED9 249 aa9.61□□□□□ -0.87
LIMS3-204ENST00000482065 C9orf163Q8N9P6 203 aa9.61□□□□□ -0.87
LIMS3-204ENST00000482065 NCR2O95944 276 aa9.6□□□□□ -0.87
LIMS3-204ENST00000482065 APCSP02743 223 aa9.6□□□□□ -0.87
LIMS3-204ENST00000482065 TEX261Q6UWH6 196 aa9.6□□□□□ -0.87
LIMS3-204ENST00000482065 TSKUQ8WUA8 353 aa9.6□□□□□ -0.87
LIMS3-204ENST00000482065 BORCS7Q96B45 105 aa9.6□□□□□ -0.87
LIMS3-204ENST00000482065 OSTCQ9NRP0 149 aa9.6□□□□□ -0.87
LIMS3-204ENST00000482065 A0A1B0GUT8 65 aa9.59□□□□□ -0.87
LIMS3-204ENST00000482065 hDV102S1A0JD36 115 aa9.59□□□□□ -0.87
LIMS3-204ENST00000482065 AMMECR1LQ6DCA0 310 aa9.59□□□□□ -0.87
LIMS3-204ENST00000482065 RNASEKQ6P5S7 137 aaKnown RBP9.59□□□□□ -0.87
LIMS3-204ENST00000482065 CLRN3Q8NCR9 226 aa9.59□□□□□ -0.87
LIMS3-204ENST00000482065 PANO1I0J062 215 aa9.58□□□□□ -0.88
LIMS3-204ENST00000482065 KRTAP10-4P60372 401 aaPredicted RBP9.58□□□□□ -0.88
LIMS3-204ENST00000482065 RNF185Q96GF1 192 aa9.58□□□□□ -0.88
LIMS3-204ENST00000482065 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.58□□□□□ -0.88
LIMS3-204ENST00000482065 V9GYV3 84 aa9.58□□□□□ -0.88
LIMS3-204ENST00000482065 TRBV6-5A0A0K0K1A5 114 aa9.57□□□□□ -0.88
LIMS3-204ENST00000482065 FAM231BA6NCW3 169 aa9.57□□□□□ -0.88
LIMS3-204ENST00000482065 GAGE12HA6NDE8 117 aa9.57□□□□□ -0.88
LIMS3-204ENST00000482065 C9JQL5 133 aa9.57□□□□□ -0.88
LIMS3-204ENST00000482065 I3L3M4 83 aa9.57□□□□□ -0.88
LIMS3-204ENST00000482065 SLPIP03973 132 aa9.57□□□□□ -0.88
LIMS3-204ENST00000482065 FGF6P10767 208 aa9.57□□□□□ -0.88
LIMS3-204ENST00000482065 PMCHP20382 165 aa9.57□□□□□ -0.88
LIMS3-204ENST00000482065 RPS10P46783 165 aaKnown RBP9.57□□□□□ -0.88
LIMS3-204ENST00000482065 CNBPP62633 177 aaKnown RBP9.57□□□□□ -0.88
LIMS3-204ENST00000482065 AMN1Q8IY45 258 aa9.57□□□□□ -0.88
LIMS3-204ENST00000482065 ISOC2Q96AB3 205 aa9.57□□□□□ -0.88
LIMS3-204ENST00000482065 TMEM191AQ9H0A3 160 aa9.57□□□□□ -0.88
LIMS3-204ENST00000482065 RAB4AP20338 218 aa9.56□□□□□ -0.88
LIMS3-204ENST00000482065 RPL23P62829 140 aaKnown RBP9.56□□□□□ -0.88
LIMS3-204ENST00000482065 SDIM1Q6ZPB5 146 aa9.56□□□□□ -0.88
LIMS3-204ENST00000482065 C15orf56Q8N910 161 aa9.56□□□□□ -0.88
LIMS3-204ENST00000482065 NUP35Q8NFH5 326 aa9.56□□□□□ -0.88
LIMS3-204ENST00000482065 ST20Q9HBF5 79 aa9.56□□□□□ -0.88
LIMS3-204ENST00000482065 TMEM242Q9NWH2 141 aa9.56□□□□□ -0.88
LIMS3-204ENST00000482065 SMKR1H3BMG3 65 aa9.55□□□□□ -0.88
LIMS3-204ENST00000482065 H7C423 109 aa9.55□□□□□ -0.88
LIMS3-204ENST00000482065 J3QL48 77 aa9.55□□□□□ -0.88
LIMS3-204ENST00000482065 TSHBP01222 138 aa9.55□□□□□ -0.88
LIMS3-204ENST00000482065 SRSF3P84103 164 aaKnown RBP9.55□□□□□ -0.88
LIMS3-204ENST00000482065 TMEM241Q24JQ0 296 aa9.55□□□□□ -0.88
LIMS3-204ENST00000482065 CHCHD10Q8WYQ3 142 aaPredicted RBP9.55□□□□□ -0.88
LIMS3-204ENST00000482065 AP5S1Q9NUS5 200 aa9.55□□□□□ -0.88
LIMS3-204ENST00000482065 LRP1Q07954 4544 aaKnown RBP9.55□□□□□ -0.88
LIMS3-204ENST00000482065 ESDP10768 282 aa9.54□□□□□ -0.88
LIMS3-204ENST00000482065 RIGQ13278 110 aa9.54□□□□□ -0.88
LIMS3-204ENST00000482065 ADIRFQ15847 76 aa9.54□□□□□ -0.88
LIMS3-204ENST00000482065 MRAP2Q96G30 205 aa9.54□□□□□ -0.88
LIMS3-204ENST00000482065 PKHD1L1Q86WI1 4243 aa9.53□□□□□ -0.88
LIMS3-204ENST00000482065 POLR2KP53803 58 aaKnown RBP9.53□□□□□ -0.88
LIMS3-204ENST00000482065 HIGD2BQ4VC39 106 aa9.53□□□□□ -0.88
LIMS3-204ENST00000482065 FAM74A3Q4VXF1 159 aa9.53□□□□□ -0.88
LIMS3-204ENST00000482065 FAT3Q8TDW7 4589 aa9.52□□□□□ -0.88
LIMS3-204ENST00000482065 IGHV3-64A0A075B6Q5 118 aa9.52□□□□□ -0.89
LIMS3-204ENST00000482065 CHTF8P0CG12 524 aa9.52□□□□□ -0.89
LIMS3-204ENST00000482065 ZNF25P17030 456 aaPredicted RBP9.52□□□□□ -0.89
LIMS3-204ENST00000482065 RPL37AP61513 92 aaKnown RBP9.52□□□□□ -0.89
LIMS3-204ENST00000482065 BTF3L4Q96K17 158 aa9.52□□□□□ -0.89
LIMS3-204ENST00000482065 NAT8Q9UHE5 227 aa9.52□□□□□ -0.89
LIMS3-204ENST00000482065 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.51□□□□□ -0.89
LIMS3-204ENST00000482065 TRBV27A0A0K0K1C4 114 aa9.51□□□□□ -0.89
LIMS3-204ENST00000482065 KRTAP29-1A8MX34 341 aaPredicted RBP9.51□□□□□ -0.89
LIMS3-204ENST00000482065 FOXI1Q12951 378 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms