RNA–Protein interactions for RNA: ENST00000481484.1

VPS13D-208, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 360 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-208ENST00000481484 CTRLP40313 264 aa2.71□□□□□ -1.98
VPS13D-208ENST00000481484 RPL35P42766 123 aaKnown RBP2.71□□□□□ -1.98
VPS13D-208ENST00000481484 CRIP1P50238 77 aa2.71□□□□□ -1.98
VPS13D-208ENST00000481484 CNBPP62633 177 aaKnown RBP2.71□□□□□ -1.98
VPS13D-208ENST00000481484 MEF2BQ02080 365 aaPredicted RBP2.71□□□□□ -1.98
VPS13D-208ENST00000481484 MPV17L2Q567V2 206 aa2.71□□□□□ -1.98
VPS13D-208ENST00000481484 Q5BKY6 102 aa2.71□□□□□ -1.98
VPS13D-208ENST00000481484 CENPWQ5EE01 88 aa2.71□□□□□ -1.98
VPS13D-208ENST00000481484 C15orf54Q8N8G6 183 aa2.71□□□□□ -1.98
VPS13D-208ENST00000481484 FER1L6-AS1Q8NA97 138 aa2.71□□□□□ -1.98
VPS13D-208ENST00000481484 DAZAP1Q96EP5 407 aaKnown RBP2.71□□□□□ -1.98
VPS13D-208ENST00000481484 RNF185Q96GF1 192 aa2.71□□□□□ -1.98
VPS13D-208ENST00000481484 CNFNQ9BYD5 112 aa2.71□□□□□ -1.98
VPS13D-208ENST00000481484 DPH3P1Q9H4G8 78 aa2.71□□□□□ -1.98
VPS13D-208ENST00000481484 JPT2Q9H910 190 aa2.71□□□□□ -1.98
VPS13D-208ENST00000481484 LRP1Q07954 4544 aaKnown RBP2.7□□□□□ -1.98
VPS13D-208ENST00000481484 A0A1B0GUV1 79 aa2.7□□□□□ -1.98
VPS13D-208ENST00000481484 USP17L23D6RBM5 183 aa2.7□□□□□ -1.98
VPS13D-208ENST00000481484 TMEM262E9PQX1 116 aa2.7□□□□□ -1.98
VPS13D-208ENST00000481484 UBE2L6O14933 153 aa2.7□□□□□ -1.98
VPS13D-208ENST00000481484 LECT2O14960 151 aa2.7□□□□□ -1.98
VPS13D-208ENST00000481484 NCR2O95944 276 aa2.7□□□□□ -1.98
VPS13D-208ENST00000481484 SMR3BP02814 79 aaPredicted RBP2.7□□□□□ -1.98
VPS13D-208ENST00000481484 MGPP08493 103 aa2.7□□□□□ -1.98
VPS13D-208ENST00000481484 IGLC6P0CF74 106 aa2.7□□□□□ -1.98
VPS13D-208ENST00000481484 BCL2P10415 239 aa2.7□□□□□ -1.98
VPS13D-208ENST00000481484 FUSP35637 526 aaKnown RBP eCLIP2.7□□□□□ -1.98
VPS13D-208ENST00000481484 GNG4P50150 75 aa2.7□□□□□ -1.98
VPS13D-208ENST00000481484 CCL20P78556 96 aa2.7□□□□□ -1.98
VPS13D-208ENST00000481484 SERTAD4-AS1Q5TG53 156 aa2.7□□□□□ -1.98
VPS13D-208ENST00000481484 TEX261Q6UWH6 196 aa2.7□□□□□ -1.98
VPS13D-208ENST00000481484 OR2D3Q8NGH3 330 aa2.7□□□□□ -1.98
VPS13D-208ENST00000481484 BAALCQ8WXS3 180 aa2.7□□□□□ -1.98
VPS13D-208ENST00000481484 TMEM243Q9BU79 118 aa2.7□□□□□ -1.98
VPS13D-208ENST00000481484 DERL1Q9BUN8 251 aa2.7□□□□□ -1.98
VPS13D-208ENST00000481484 C19orf71A6NCJ1 209 aa2.69□□□□□ -1.98
VPS13D-208ENST00000481484 TMEM250H0YL14 139 aa2.69□□□□□ -1.98
VPS13D-208ENST00000481484 H7C423 109 aa2.69□□□□□ -1.98
VPS13D-208ENST00000481484 M0QY20 66 aa2.69□□□□□ -1.98
VPS13D-208ENST00000481484 NDUFS6O75380 124 aaKnown RBP2.69□□□□□ -1.98
VPS13D-208ENST00000481484 ZNF25P17030 456 aaPredicted RBP2.69□□□□□ -1.98
VPS13D-208ENST00000481484 SULT1A2P50226 295 aa2.69□□□□□ -1.98
VPS13D-208ENST00000481484 RPL37AP61513 92 aaKnown RBP2.69□□□□□ -1.98
VPS13D-208ENST00000481484 RBX1P62877 108 aa2.69□□□□□ -1.98
VPS13D-208ENST00000481484 HAMPP81172 84 aa2.69□□□□□ -1.98
VPS13D-208ENST00000481484 REG3AQ06141 175 aa2.69□□□□□ -1.98
VPS13D-208ENST00000481484 SMAGPQ0VAQ4 97 aa2.69□□□□□ -1.98
VPS13D-208ENST00000481484 CIRBPQ14011 172 aaKnown RBP2.69□□□□□ -1.98
VPS13D-208ENST00000481484 COTL1Q14019 142 aa2.69□□□□□ -1.98
VPS13D-208ENST00000481484 SUMO4Q6EEV6 95 aa2.69□□□□□ -1.98
VPS13D-208ENST00000481484 CFAP161Q6P656 301 aa2.69□□□□□ -1.98
VPS13D-208ENST00000481484 RASL11AQ6T310 242 aa2.69□□□□□ -1.98
VPS13D-208ENST00000481484 ENHOQ6UWT2 76 aa2.69□□□□□ -1.98
VPS13D-208ENST00000481484 TMUB2Q71RG4 321 aa2.69□□□□□ -1.98
VPS13D-208ENST00000481484 SMIM15Q7Z3B0 74 aa2.69□□□□□ -1.98
VPS13D-208ENST00000481484 SLC51BQ86UW2 128 aa2.69□□□□□ -1.98
VPS13D-208ENST00000481484 TCTE3Q8IZS6 198 aa2.69□□□□□ -1.98
VPS13D-208ENST00000481484 C9orf163Q8N9P6 203 aa2.69□□□□□ -1.98
VPS13D-208ENST00000481484 CIRBP-AS1Q8TBR5 109 aa2.69□□□□□ -1.98
VPS13D-208ENST00000481484 GNG13Q9P2W3 67 aa2.69□□□□□ -1.98
VPS13D-208ENST00000481484 KIF25-AS1Q9Y6Z4 181 aa2.69□□□□□ -1.98
VPS13D-208ENST00000481484 IGHV3-64A0A075B6Q5 118 aa2.68□□□□□ -1.98
VPS13D-208ENST00000481484 A0A1B0GV50 99 aa2.68□□□□□ -1.98
VPS13D-208ENST00000481484 APCSP02743 223 aa2.68□□□□□ -1.98
VPS13D-208ENST00000481484 AMTP48728 403 aa2.68□□□□□ -1.98
VPS13D-208ENST00000481484 LINC00269Q8N2A0 174 aa2.68□□□□□ -1.98
VPS13D-208ENST00000481484 C7orf33Q8WU49 177 aa2.68□□□□□ -1.98
VPS13D-208ENST00000481484 BORCS7Q96B45 105 aa2.68□□□□□ -1.98
VPS13D-208ENST00000481484 TPPP3Q9BW30 176 aa2.68□□□□□ -1.98
VPS13D-208ENST00000481484 RPP21Q9H633 154 aaKnown RBP2.68□□□□□ -1.98
VPS13D-208ENST00000481484 NIT2Q9NQR4 276 aa2.68□□□□□ -1.98
VPS13D-208ENST00000481484 LINC00474Q9P2X8 69 aa2.68□□□□□ -1.98
VPS13D-208ENST00000481484 Q9UF83 564 aa2.68□□□□□ -1.98
VPS13D-208ENST00000481484 TRBV20OR9-2A0A075B6H5 130 aa2.67□□□□□ -1.98
VPS13D-208ENST00000481484 IGLV10-54A0A075B6I4 117 aa2.67□□□□□ -1.98
VPS13D-208ENST00000481484 hDV102S1A0JD36 115 aa2.67□□□□□ -1.98
VPS13D-208ENST00000481484 FAM231BA6NCW3 169 aa2.67□□□□□ -1.98
VPS13D-208ENST00000481484 SMLR1H3BR10 107 aa2.67□□□□□ -1.98
VPS13D-208ENST00000481484 PPP1R17O96001 155 aa2.67□□□□□ -1.98
VPS13D-208ENST00000481484 PRSS1P07477 247 aa2.67□□□□□ -1.98
VPS13D-208ENST00000481484 NKX2-5P52952 324 aaPredicted RBP2.67□□□□□ -1.98
VPS13D-208ENST00000481484 KRTAP10-4P60372 401 aaPredicted RBP2.67□□□□□ -1.98
VPS13D-208ENST00000481484 GAGE6Q13070 117 aa2.67□□□□□ -1.98
VPS13D-208ENST00000481484 AMMECR1LQ6DCA0 310 aa2.67□□□□□ -1.98
VPS13D-208ENST00000481484 CLPSL2Q6UWE3 100 aa2.67□□□□□ -1.98
VPS13D-208ENST00000481484 Q6ZRU5 148 aa2.67□□□□□ -1.98
VPS13D-208ENST00000481484 NTM-AS1Q6ZSK4 140 aa2.67□□□□□ -1.98
VPS13D-208ENST00000481484 FAM231DQ6ZW35 169 aa2.67□□□□□ -1.98
VPS13D-208ENST00000481484 C9orf62Q8N4C0 152 aa2.67□□□□□ -1.98
VPS13D-208ENST00000481484 C20orf203Q8NBC4 194 aa2.67□□□□□ -1.98
VPS13D-208ENST00000481484 SPACA4Q8TDM5 124 aa2.67□□□□□ -1.98
VPS13D-208ENST00000481484 MED9Q9NWA0 146 aa2.67□□□□□ -1.98
VPS13D-208ENST00000481484 GVQW2A0A096LPI5 108 aaPredicted RBP2.66□□□□□ -1.98
VPS13D-208ENST00000481484 MUC21A0A0G2JKD1 596 aa2.66□□□□□ -1.98
VPS13D-208ENST00000481484 MUC21A0A140T8X8 626 aa2.66□□□□□ -1.98
VPS13D-208ENST00000481484 A8MWL6 223 aa2.66□□□□□ -1.98
VPS13D-208ENST00000481484 TCAPO15273 167 aa2.66□□□□□ -1.98
VPS13D-208ENST00000481484 CCL25O15444 150 aa2.66□□□□□ -1.98
VPS13D-208ENST00000481484 NTF3P20783 257 aa2.66□□□□□ -1.98
VPS13D-208ENST00000481484 MALP21145 153 aa2.66□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms