RNA–Protein interactions for RNA: ENST00000481409.1

USP39-215, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-215ENST00000481409 FAM231CP0DMU5 169 aa7.11□□□□□ -1.27
USP39-215ENST00000481409 HTN3P15516 51 aa7.11□□□□□ -1.27
USP39-215ENST00000481409 TCTAP57738 103 aa7.11□□□□□ -1.27
USP39-215ENST00000481409 GAGE1Q13065 139 aa7.11□□□□□ -1.27
USP39-215ENST00000481409 GAGE4Q13068 117 aa7.11□□□□□ -1.27
USP39-215ENST00000481409 GAGE5Q13069 117 aa7.11□□□□□ -1.27
USP39-215ENST00000481409 GAGE13Q4V321 117 aa7.11□□□□□ -1.27
USP39-215ENST00000481409 RNASEKQ6P5S7 137 aaKnown RBP7.11□□□□□ -1.27
USP39-215ENST00000481409 ATP6V0E2Q8NHE4 81 aa7.11□□□□□ -1.27
USP39-215ENST00000481409 URB1-AS1Q96HZ7 61 aa7.11□□□□□ -1.27
USP39-215ENST00000481409 VSIG2Q96IQ7 327 aa7.11□□□□□ -1.27
USP39-215ENST00000481409 HBDP02042 147 aa7.1□□□□□ -1.27
USP39-215ENST00000481409 S100A2P29034 98 aa7.1□□□□□ -1.27
USP39-215ENST00000481409 PKIAP61925 76 aa7.1□□□□□ -1.27
USP39-215ENST00000481409 NEGR1Q7Z3B1 354 aa7.1□□□□□ -1.27
USP39-215ENST00000481409 IGHV1-24A0A0C4DH33 117 aa7.09□□□□□ -1.27
USP39-215ENST00000481409 TMEM238LA0A1B0GVL6 79 aa7.09□□□□□ -1.27
USP39-215ENST00000481409 NUPR2A6NF83 97 aa7.09□□□□□ -1.27
USP39-215ENST00000481409 NUDT3O95989 172 aa7.09□□□□□ -1.27
USP39-215ENST00000481409 TSHBP01222 138 aa7.09□□□□□ -1.27
USP39-215ENST00000481409 LINC00310P59036 64 aa7.09□□□□□ -1.27
USP39-215ENST00000481409 SNRPEP62304 92 aaKnown RBP7.09□□□□□ -1.27
USP39-215ENST00000481409 PHLDA1Q8WV24 401 aaPredicted RBP7.09□□□□□ -1.27
USP39-215ENST00000481409 HSPB8Q9UJY1 196 aa7.09□□□□□ -1.27
USP39-215ENST00000481409 TRBV25-1A0A075B6N4 114 aa7.08□□□□□ -1.28
USP39-215ENST00000481409 A0A0J9YY99 117 aa7.08□□□□□ -1.28
USP39-215ENST00000481409 AMTP48728 403 aa7.08□□□□□ -1.28
USP39-215ENST00000481409 HIST3H2BBQ8N257 126 aa7.08□□□□□ -1.28
USP39-215ENST00000481409 TOMM6Q96B49 74 aa7.08□□□□□ -1.28
USP39-215ENST00000481409 CYSLTR1Q9Y271 337 aa7.08□□□□□ -1.28
USP39-215ENST00000481409 KLK5Q9Y337 293 aaPredicted RBP7.08□□□□□ -1.28
USP39-215ENST00000481409 A0A096LPF7 62 aa7.07□□□□□ -1.28
USP39-215ENST00000481409 TRBV6-8A0A0A6YYG3 113 aa7.07□□□□□ -1.28
USP39-215ENST00000481409 LOC100131303A0A0U1RQF7 123 aa7.07□□□□□ -1.28
USP39-215ENST00000481409 ATP5LO75964 103 aa7.07□□□□□ -1.28
USP39-215ENST00000481409 LEPROTL1O95214 131 aa7.07□□□□□ -1.28
USP39-215ENST00000481409 PAPPA-AS1Q5QFB9 102 aa7.07□□□□□ -1.28
USP39-215ENST00000481409 C2orf66Q6UXQ4 117 aa7.07□□□□□ -1.28
USP39-215ENST00000481409 C20orf203Q8NBC4 194 aa7.07□□□□□ -1.28
USP39-215ENST00000481409 TIMM21Q9BVV7 248 aa7.07□□□□□ -1.28
USP39-215ENST00000481409 Q9UF83 564 aa7.07□□□□□ -1.28
USP39-215ENST00000481409 PYGO1Q9Y3Y4 419 aa7.07□□□□□ -1.28
USP39-215ENST00000481409 CSDC2Q9Y534 153 aaKnown RBP7.07□□□□□ -1.28
USP39-215ENST00000481409 NUPR1O60356 82 aa7.06□□□□□ -1.28
USP39-215ENST00000481409 ZNF25P17030 456 aaPredicted RBP7.06□□□□□ -1.28
USP39-215ENST00000481409 BTF3P20290 206 aaKnown RBP7.06□□□□□ -1.28
USP39-215ENST00000481409 AKR1D1P51857 326 aa7.06□□□□□ -1.28
USP39-215ENST00000481409 PDZD11Q5EBL8 140 aa7.06□□□□□ -1.28
USP39-215ENST00000481409 LELP1Q5T871 98 aa7.06□□□□□ -1.28
USP39-215ENST00000481409 CEMP1Q6PRD7 247 aaPredicted RBP7.06□□□□□ -1.28
USP39-215ENST00000481409 ERASQ7Z444 233 aa7.06□□□□□ -1.28
USP39-215ENST00000481409 TMEM141Q96I45 108 aa7.06□□□□□ -1.28
USP39-215ENST00000481409 TIMM17AQ99595 171 aa7.06□□□□□ -1.28
USP39-215ENST00000481409 TMEM243Q9BU79 118 aa7.06□□□□□ -1.28
USP39-215ENST00000481409 CHCHD7Q9BUK0 85 aa7.06□□□□□ -1.28
USP39-215ENST00000481409 SPANXA1Q9NS26 97 aa7.06□□□□□ -1.28
USP39-215ENST00000481409 IGHV3-38A0A0C4DH36 116 aa7.05□□□□□ -1.28
USP39-215ENST00000481409 UBE2L6O14933 153 aa7.05□□□□□ -1.28
USP39-215ENST00000481409 NTM-AS1Q6ZSK4 140 aa7.05□□□□□ -1.28
USP39-215ENST00000481409 MRPL52Q86TS9 123 aaKnown RBP7.05□□□□□ -1.28
USP39-215ENST00000481409 HIST1H2BLQ99880 126 aa7.05□□□□□ -1.28
USP39-215ENST00000481409 HUWE1Q7Z6Z7 4374 aaKnown RBP7.05□□□□□ -1.28
USP39-215ENST00000481409 DNAH9Q9NYC9 4486 aa7.04□□□□□ -1.28
USP39-215ENST00000481409 MEGF8Q7Z7M0 2845 aa7.04□□□□□ -1.28
USP39-215ENST00000481409 A0A096LNJ9 63 aa7.04□□□□□ -1.28
USP39-215ENST00000481409 TRAV8-6A0A0B4J262 113 aa7.04□□□□□ -1.28
USP39-215ENST00000481409 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP7.04□□□□□ -1.28
USP39-215ENST00000481409 LYPD5Q6UWN5 251 aa7.04□□□□□ -1.28
USP39-215ENST00000481409 FAM19A2Q8N3H0 131 aa7.04□□□□□ -1.28
USP39-215ENST00000481409 SCGB3A1Q96QR1 104 aa7.04□□□□□ -1.28
USP39-215ENST00000481409 TENM3Q9P273 2699 aa7.04□□□□□ -1.28
USP39-215ENST00000481409 A0A1B0GUV1 79 aa7.03□□□□□ -1.28
USP39-215ENST00000481409 IGLL5B9A064 214 aa7.03□□□□□ -1.28
USP39-215ENST00000481409 FABP4P15090 132 aa7.03□□□□□ -1.28
USP39-215ENST00000481409 MRPS36P82909 103 aaKnown RBP7.03□□□□□ -1.28
USP39-215ENST00000481409 SPATA12Q7Z6I5 190 aa7.03□□□□□ -1.28
USP39-215ENST00000481409 TMEM101Q96IK0 257 aa7.03□□□□□ -1.28
USP39-215ENST00000481409 WWC2-AS2Q96NR7 200 aa7.03□□□□□ -1.28
USP39-215ENST00000481409 MAP1LC3CQ9BXW4 147 aa7.03□□□□□ -1.28
USP39-215ENST00000481409 IGIPA6NJ69 53 aa7.02□□□□□ -1.29
USP39-215ENST00000481409 CCL18P55774 89 aa7.02□□□□□ -1.29
USP39-215ENST00000481409 PMCHL1Q16048 86 aa7.02□□□□□ -1.29
USP39-215ENST00000481409 Q6ZN92 141 aa7.02□□□□□ -1.29
USP39-215ENST00000481409 IFI27L1Q96BM0 104 aa7.02□□□□□ -1.29
USP39-215ENST00000481409 UBE2D4Q9Y2X8 147 aa7.02□□□□□ -1.29
USP39-215ENST00000481409 K7EP13 123 aa7.01□□□□□ -1.29
USP39-215ENST00000481409 FGF6P10767 208 aa7.01□□□□□ -1.29
USP39-215ENST00000481409 AMMECR1LQ6DCA0 310 aa7.01□□□□□ -1.29
USP39-215ENST00000481409 DGAT2L7PQ6IED9 249 aa7.01□□□□□ -1.29
USP39-215ENST00000481409 PET117Q6UWS5 81 aa7.01□□□□□ -1.29
USP39-215ENST00000481409 CHCHD5Q9BSY4 110 aa7.01□□□□□ -1.29
USP39-215ENST00000481409 UPK3BQ9BT76 320 aa7.01□□□□□ -1.29
USP39-215ENST00000481409 COL7A1Q02388 2944 aa7□□□□□ -1.29
USP39-215ENST00000481409 TRAV12-1A0A0B4J245 112 aa7□□□□□ -1.29
USP39-215ENST00000481409 C20orf202A1L168 122 aa7□□□□□ -1.29
USP39-215ENST00000481409 IFITM10A6NMD0 228 aa7□□□□□ -1.29
USP39-215ENST00000481409 RPL39P62891 51 aaKnown RBP7□□□□□ -1.29
USP39-215ENST00000481409 OR5A1Q8NGJ0 315 aa7□□□□□ -1.29
USP39-215ENST00000481409 MUC7Q8TAX7 377 aa7□□□□□ -1.29
USP39-215ENST00000481409 APLNQ9ULZ1 77 aa7□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms