RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 IGLV1-47P01700 117 aa6.71□□□□□ -1.34
SYNE1-224ENST00000478916 C2orf16Q68DN1 1984 aa6.71□□□□□ -1.34
SYNE1-224ENST00000478916 MALRD1Q5VYJ5 2156 aa6.71□□□□□ -1.34
SYNE1-224ENST00000478916 CCDC179H3BU77 68 aa6.71□□□□□ -1.34
SYNE1-224ENST00000478916 KLK12Q9UKR0 248 aa6.71□□□□□ -1.34
SYNE1-224ENST00000478916 C19orf71A6NCJ1 209 aa6.7□□□□□ -1.34
SYNE1-224ENST00000478916 MRPS36P82909 103 aaKnown RBP6.7□□□□□ -1.34
SYNE1-224ENST00000478916 PRAC2D3DTV9 90 aa6.7□□□□□ -1.34
SYNE1-224ENST00000478916 RBX1P62877 108 aa6.7□□□□□ -1.34
SYNE1-224ENST00000478916 DENND4CQ5VZ89 1909 aa6.7□□□□□ -1.34
SYNE1-224ENST00000478916 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP6.7□□□□□ -1.34
SYNE1-224ENST00000478916 PRO3102Q9H379 93 aa6.7□□□□□ -1.34
SYNE1-224ENST00000478916 TRBV10-1A0A0K0K1A3 114 aa6.69□□□□□ -1.34
SYNE1-224ENST00000478916 TRBV27A0A0K0K1C4 114 aa6.69□□□□□ -1.34
SYNE1-224ENST00000478916 TRIAP1O43715 76 aa6.69□□□□□ -1.34
SYNE1-224ENST00000478916 KIR2DL5BQ8NHK3 375 aa6.69□□□□□ -1.34
SYNE1-224ENST00000478916 TECTAO75443 2155 aa6.69□□□□□ -1.34
SYNE1-224ENST00000478916 LINC00694P0DN24 101 aa6.69□□□□□ -1.34
SYNE1-224ENST00000478916 IGHV4-31P0DP07 118 aa6.69□□□□□ -1.34
SYNE1-224ENST00000478916 M0QXV9 152 aa6.69□□□□□ -1.34
SYNE1-224ENST00000478916 PMAIP1Q13794 54 aa6.69□□□□□ -1.34
SYNE1-224ENST00000478916 ADAMTS9Q9P2N4 1935 aa6.69□□□□□ -1.34
SYNE1-224ENST00000478916 A0A1B0GXF2 115 aa6.69□□□□□ -1.34
SYNE1-224ENST00000478916 SLPIP03973 132 aa6.69□□□□□ -1.34
SYNE1-224ENST00000478916 TMEM131Q92545 1883 aa6.69□□□□□ -1.34
SYNE1-224ENST00000478916 MRPS12O15235 138 aaKnown RBP6.69□□□□□ -1.34
SYNE1-224ENST00000478916 FRMD6-AS1P0C7T7 363 aa6.68□□□□□ -1.34
SYNE1-224ENST00000478916 ESM1Q9NQ30 184 aa6.68□□□□□ -1.34
SYNE1-224ENST00000478916 ZNF843Q8N446 348 aa6.68□□□□□ -1.34
SYNE1-224ENST00000478916 FAM208BQ5VWN6 2430 aa6.68□□□□□ -1.34
SYNE1-224ENST00000478916 ZFAND2AQ8N6M9 145 aa6.68□□□□□ -1.34
SYNE1-224ENST00000478916 C19orf84I3L1E1 186 aa6.68□□□□□ -1.34
SYNE1-224ENST00000478916 Q8N9L7 120 aa6.68□□□□□ -1.34
SYNE1-224ENST00000478916 PLXNB3Q9ULL4 1909 aa6.68□□□□□ -1.34
SYNE1-224ENST00000478916 A0A0J9YWU9 116 aa6.67□□□□□ -1.34
SYNE1-224ENST00000478916 TMEM223A0PJW6 202 aa6.67□□□□□ -1.34
SYNE1-224ENST00000478916 Q6YL49 198 aa6.67□□□□□ -1.34
SYNE1-224ENST00000478916 NEXN-AS1Q8NBZ9 246 aa6.67□□□□□ -1.34
SYNE1-224ENST00000478916 SHISA2Q6UWI4 295 aa6.67□□□□□ -1.34
SYNE1-224ENST00000478916 PLCE1Q9P212 2302 aa6.67□□□□□ -1.34
SYNE1-224ENST00000478916 C14orf177Q52M58 125 aa6.67□□□□□ -1.34
SYNE1-224ENST00000478916 HIGD2AQ9BW72 106 aa6.67□□□□□ -1.34
SYNE1-224ENST00000478916 C11orf45Q8TAV5 145 aa6.67□□□□□ -1.34
SYNE1-224ENST00000478916 CEMP1Q6PRD7 247 aaPredicted RBP6.67□□□□□ -1.34
SYNE1-224ENST00000478916 COL4A4P53420 1690 aaPredicted RBP6.67□□□□□ -1.34
SYNE1-224ENST00000478916 LMO4P61968 165 aa6.66□□□□□ -1.34
SYNE1-224ENST00000478916 ZFAND3Q9H8U3 227 aa6.66□□□□□ -1.34
SYNE1-224ENST00000478916 ODF3BA8MYP8 253 aa6.66□□□□□ -1.34
SYNE1-224ENST00000478916 HRCT1Q6UXD1 115 aa6.66□□□□□ -1.34
SYNE1-224ENST00000478916 ODF3L1Q8IXM7 274 aa6.66□□□□□ -1.34
SYNE1-224ENST00000478916 LINC00308Q8TCZ7 52 aa6.66□□□□□ -1.34
SYNE1-224ENST00000478916 CCKP06307 115 aa6.66□□□□□ -1.34
SYNE1-224ENST00000478916 INAFM1C9JVW0 142 aa6.66□□□□□ -1.34
SYNE1-224ENST00000478916 TNCP24821 2201 aa6.66□□□□□ -1.34
SYNE1-224ENST00000478916 SMIM9A6NGZ8 99 aa6.66□□□□□ -1.34
SYNE1-224ENST00000478916 IBA57-AS1B1ANH7 110 aa6.66□□□□□ -1.34
SYNE1-224ENST00000478916 PRO0255Q9UI72 69 aa6.66□□□□□ -1.34
SYNE1-224ENST00000478916 H7C423 109 aa6.66□□□□□ -1.34
SYNE1-224ENST00000478916 DEFB4AO15263 64 aa6.66□□□□□ -1.34
SYNE1-224ENST00000478916 MAP6D1Q9H9H5 199 aa6.66□□□□□ -1.34
SYNE1-224ENST00000478916 MED13Q9UHV7 2174 aa6.66□□□□□ -1.34
SYNE1-224ENST00000478916 FSTL3O95633 263 aa6.65□□□□□ -1.34
SYNE1-224ENST00000478916 HILS1P60008 231 aa6.65□□□□□ -1.35
SYNE1-224ENST00000478916 Q6Q795 121 aa6.64□□□□□ -1.35
SYNE1-224ENST00000478916 CLUHP3Q96NS8 147 aa6.64□□□□□ -1.35
SYNE1-224ENST00000478916 A0A0J9YX75 114 aa6.64□□□□□ -1.35
SYNE1-224ENST00000478916 C1orf158Q8N1D5 194 aa6.64□□□□□ -1.35
SYNE1-224ENST00000478916 RETNQ9HD89 108 aa6.64□□□□□ -1.35
SYNE1-224ENST00000478916 FAM19A1Q7Z5A9 133 aa6.64□□□□□ -1.35
SYNE1-224ENST00000478916 C3orf84H3BNL1 204 aa6.64□□□□□ -1.35
SYNE1-224ENST00000478916 MIFP14174 115 aa6.64□□□□□ -1.35
SYNE1-224ENST00000478916 MSMPQ1L6U9 139 aa6.64□□□□□ -1.35
SYNE1-224ENST00000478916 C9orf85Q96MD7 179 aa6.64□□□□□ -1.35
SYNE1-224ENST00000478916 CREBBPQ92793 2442 aa6.63□□□□□ -1.35
SYNE1-224ENST00000478916 REG3AQ06141 175 aa6.63□□□□□ -1.35
SYNE1-224ENST00000478916 LINC00269Q8N2A0 174 aa6.63□□□□□ -1.35
SYNE1-224ENST00000478916 MAPKAPK5-AS1Q8N8E1 139 aa6.63□□□□□ -1.35
SYNE1-224ENST00000478916 GDF5OSQ5U4N7 250 aa6.63□□□□□ -1.35
SYNE1-224ENST00000478916 UNQ9165/PRO28630Q6UXU0 137 aa6.63□□□□□ -1.35
SYNE1-224ENST00000478916 KIAA1549Q9HCM3 1950 aa6.63□□□□□ -1.35
SYNE1-224ENST00000478916 ZNF22P17026 224 aaPredicted RBP6.63□□□□□ -1.35
SYNE1-224ENST00000478916 PRR4Q16378 134 aa6.63□□□□□ -1.35
SYNE1-224ENST00000478916 TANC2Q9HCD6 1990 aa6.63□□□□□ -1.35
SYNE1-224ENST00000478916 PTPRQQ9UMZ3 2332 aa6.63□□□□□ -1.35
SYNE1-224ENST00000478916 WISP2O76076 250 aa6.63□□□□□ -1.35
SYNE1-224ENST00000478916 CFAP126Q5VTH2 177 aa6.63□□□□□ -1.35
SYNE1-224ENST00000478916 LINC00467Q9BRT7 94 aa6.63□□□□□ -1.35
SYNE1-224ENST00000478916 IGF1P05019 195 aa6.63□□□□□ -1.35
SYNE1-224ENST00000478916 FAM30AQ9NZY2 134 aa6.63□□□□□ -1.35
SYNE1-224ENST00000478916 CDKN2A-AS1Q9UH64 79 aa6.63□□□□□ -1.35
SYNE1-224ENST00000478916 A0A096LNI7 61 aa6.62□□□□□ -1.35
SYNE1-224ENST00000478916 IGKV1D-37A0A075B6S9 117 aa6.62□□□□□ -1.35
SYNE1-224ENST00000478916 TRAV7A0A075B6U4 112 aa6.62□□□□□ -1.35
SYNE1-224ENST00000478916 XGP55808 180 aa6.62□□□□□ -1.35
SYNE1-224ENST00000478916 Q6JHZ5 121 aa6.62□□□□□ -1.35
SYNE1-224ENST00000478916 IGKV2-24A0A0C4DH68 120 aa6.62□□□□□ -1.35
SYNE1-224ENST00000478916 IGLV4-3A0A075B6K6 122 aa6.62□□□□□ -1.35
SYNE1-224ENST00000478916 LINC00574Q9H8X3 128 aa6.62□□□□□ -1.35
SYNE1-224ENST00000478916 FAM222AQ5U5X8 452 aa6.62□□□□□ -1.35
SYNE1-224ENST00000478916 PCDH15Q96QU1 1955 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms