RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 C11orf52Q96A22 123 aa4.53□□□□□ -1.68
CCDC88A-213ENST00000476903 PACRGQ96M98 296 aaPredicted RBP4.53□□□□□ -1.68
CCDC88A-213ENST00000476903 Q9UF83 564 aa4.53□□□□□ -1.68
CCDC88A-213ENST00000476903 DNAH5Q8TE73 4624 aa4.53□□□□□ -1.68
CCDC88A-213ENST00000476903 TRBV7-3A0A075B6L6 115 aa4.52□□□□□ -1.69
CCDC88A-213ENST00000476903 IGLV5-52A0A0A0MRZ9 124 aa4.52□□□□□ -1.69
CCDC88A-213ENST00000476903 A0A1B0GW15 77 aa4.52□□□□□ -1.69
CCDC88A-213ENST00000476903 SNAI2O43623 268 aa4.52□□□□□ -1.69
CCDC88A-213ENST00000476903 IFNA1P01562 189 aa4.52□□□□□ -1.69
CCDC88A-213ENST00000476903 PPBPP02775 128 aa4.52□□□□□ -1.69
CCDC88A-213ENST00000476903 OR5AL1P0C617 328 aa4.52□□□□□ -1.69
CCDC88A-213ENST00000476903 SULT1A2P50226 295 aa4.52□□□□□ -1.69
CCDC88A-213ENST00000476903 KRTAP10-1P60331 282 aa4.52□□□□□ -1.69
CCDC88A-213ENST00000476903 CCL20P78556 96 aa4.52□□□□□ -1.69
CCDC88A-213ENST00000476903 ZNF56Q15929 161 aa4.52□□□□□ -1.69
CCDC88A-213ENST00000476903 COX19Q49B96 90 aa4.52□□□□□ -1.69
CCDC88A-213ENST00000476903 KCNIP4Q6PIL6 250 aa4.52□□□□□ -1.69
CCDC88A-213ENST00000476903 Q8N814 137 aa4.52□□□□□ -1.69
CCDC88A-213ENST00000476903 OR10AG1Q8NH19 301 aa4.52□□□□□ -1.69
CCDC88A-213ENST00000476903 A0A087WX48 190 aa4.51□□□□□ -1.69
CCDC88A-213ENST00000476903 EPM2AB3EWF7 344 aa4.51□□□□□ -1.69
CCDC88A-213ENST00000476903 PDE6DO43924 150 aa4.51□□□□□ -1.69
CCDC88A-213ENST00000476903 C1QBP02746 253 aa4.51□□□□□ -1.69
CCDC88A-213ENST00000476903 SMIM17P0DL12 118 aa4.51□□□□□ -1.69
CCDC88A-213ENST00000476903 SCGB1A1P11684 91 aa4.51□□□□□ -1.69
CCDC88A-213ENST00000476903 XGP55808 180 aa4.51□□□□□ -1.69
CCDC88A-213ENST00000476903 RPS20P60866 119 aaKnown RBP4.51□□□□□ -1.69
CCDC88A-213ENST00000476903 UBE2D3P61077 147 aa4.51□□□□□ -1.69
CCDC88A-213ENST00000476903 UBE2D2P62837 147 aa4.51□□□□□ -1.69
CCDC88A-213ENST00000476903 MEF2BQ02080 365 aaPredicted RBP4.51□□□□□ -1.69
CCDC88A-213ENST00000476903 ELOBQ15370 118 aa4.51□□□□□ -1.69
CCDC88A-213ENST00000476903 CENPWQ5EE01 88 aa4.51□□□□□ -1.69
CCDC88A-213ENST00000476903 RNASEKQ6P5S7 137 aaKnown RBP4.51□□□□□ -1.69
CCDC88A-213ENST00000476903 DAZ4Q86SG3 579 aaKnown RBP4.51□□□□□ -1.69
CCDC88A-213ENST00000476903 NIT1Q86X76 327 aa4.51□□□□□ -1.69
CCDC88A-213ENST00000476903 OR10G8Q8NGN5 311 aa4.51□□□□□ -1.69
CCDC88A-213ENST00000476903 RMI2Q96E14 147 aa4.51□□□□□ -1.69
CCDC88A-213ENST00000476903 SMIM12Q96EX1 92 aa4.51□□□□□ -1.69
CCDC88A-213ENST00000476903 AP1S3Q96PC3 154 aa4.51□□□□□ -1.69
CCDC88A-213ENST00000476903 C12orf57Q99622 126 aa4.51□□□□□ -1.69
CCDC88A-213ENST00000476903 CHCHD7Q9BUK0 85 aa4.51□□□□□ -1.69
CCDC88A-213ENST00000476903 DERL1Q9BUN8 251 aa4.51□□□□□ -1.69
CCDC88A-213ENST00000476903 DAZ3Q9NR90 486 aaKnown RBP4.51□□□□□ -1.69
CCDC88A-213ENST00000476903 MUC21A0A0G2JKD1 596 aa4.5□□□□□ -1.69
CCDC88A-213ENST00000476903 MUC21A0A140T8X8 626 aa4.5□□□□□ -1.69
CCDC88A-213ENST00000476903 A0A1B0GVG6 124 aa4.5□□□□□ -1.69
CCDC88A-213ENST00000476903 S100A8P05109 93 aa4.5□□□□□ -1.69
CCDC88A-213ENST00000476903 BCL2P10415 239 aa4.5□□□□□ -1.69
CCDC88A-213ENST00000476903 GNG4P50150 75 aa4.5□□□□□ -1.69
CCDC88A-213ENST00000476903 NEXN-AS1Q8NBZ9 246 aa4.5□□□□□ -1.69
CCDC88A-213ENST00000476903 TMEM70Q9BUB7 260 aa4.5□□□□□ -1.69
CCDC88A-213ENST00000476903 BIN3Q9NQY0 253 aa4.5□□□□□ -1.69
CCDC88A-213ENST00000476903 KLK12Q9UKR0 248 aa4.5□□□□□ -1.69
CCDC88A-213ENST00000476903 IGKV2D-24A0A075B6R9 120 aa4.49□□□□□ -1.69
CCDC88A-213ENST00000476903 TRBV6-8A0A0A6YYG3 113 aa4.49□□□□□ -1.69
CCDC88A-213ENST00000476903 C19orf71A6NCJ1 209 aa4.49□□□□□ -1.69
CCDC88A-213ENST00000476903 RBFOX3A6NFN3 312 aa4.49□□□□□ -1.69
CCDC88A-213ENST00000476903 TMEM262E9PQX1 116 aa4.49□□□□□ -1.69
CCDC88A-213ENST00000476903 TCAPO15273 167 aa4.49□□□□□ -1.69
CCDC88A-213ENST00000476903 IGLV2-8P01709 118 aa4.49□□□□□ -1.69
CCDC88A-213ENST00000476903 P01737 135 aa4.49□□□□□ -1.69
CCDC88A-213ENST00000476903 NKX2-5P52952 324 aaPredicted RBP4.49□□□□□ -1.69
CCDC88A-213ENST00000476903 SEC61GP60059 68 aa4.49□□□□□ -1.69
CCDC88A-213ENST00000476903 PKIAP61925 76 aa4.49□□□□□ -1.69
CCDC88A-213ENST00000476903 CACNG7P62955 275 aa4.49□□□□□ -1.69
CCDC88A-213ENST00000476903 Q0VG73 95 aa4.49□□□□□ -1.69
CCDC88A-213ENST00000476903 TMEM97Q5BJF2 176 aa4.49□□□□□ -1.69
CCDC88A-213ENST00000476903 C6orf226Q5I0X4 101 aa4.49□□□□□ -1.69
CCDC88A-213ENST00000476903 NRACQ8N912 160 aa4.49□□□□□ -1.69
CCDC88A-213ENST00000476903 FER1L6-AS1Q8NA97 138 aa4.49□□□□□ -1.69
CCDC88A-213ENST00000476903 FRZBQ92765 325 aa4.49□□□□□ -1.69
CCDC88A-213ENST00000476903 C2orf88Q9BSF0 95 aa4.49□□□□□ -1.69
CCDC88A-213ENST00000476903 MED9Q9NWA0 146 aa4.49□□□□□ -1.69
CCDC88A-213ENST00000476903 VAX2Q9UIW0 290 aa4.49□□□□□ -1.69
CCDC88A-213ENST00000476903 LINC00587B1AMM8 73 aa4.48□□□□□ -1.69
CCDC88A-213ENST00000476903 USP17L23D6RBM5 183 aa4.48□□□□□ -1.69
CCDC88A-213ENST00000476903 F2Z2F3 143 aa4.48□□□□□ -1.69
CCDC88A-213ENST00000476903 LECT2O14960 151 aa4.48□□□□□ -1.69
CCDC88A-213ENST00000476903 MGPP08493 103 aa4.48□□□□□ -1.69
CCDC88A-213ENST00000476903 IGLC6P0CF74 106 aa4.48□□□□□ -1.69
CCDC88A-213ENST00000476903 GZMBP10144 247 aa4.48□□□□□ -1.69
CCDC88A-213ENST00000476903 WFDC2Q14508 124 aa4.48□□□□□ -1.69
CCDC88A-213ENST00000476903 Q5VSD8 79 aa4.48□□□□□ -1.69
CCDC88A-213ENST00000476903 Q8N976 141 aa4.48□□□□□ -1.69
CCDC88A-213ENST00000476903 BAALCQ8WXS3 180 aa4.48□□□□□ -1.69
CCDC88A-213ENST00000476903 UBE2WQ96B02 151 aa4.48□□□□□ -1.69
CCDC88A-213ENST00000476903 CHCHD5Q9BSY4 110 aa4.48□□□□□ -1.69
CCDC88A-213ENST00000476903 KIF25-AS1Q9Y6Z4 181 aa4.48□□□□□ -1.69
CCDC88A-213ENST00000476903 TRBV20OR9-2A0A075B6H5 130 aa4.47□□□□□ -1.69
CCDC88A-213ENST00000476903 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.47□□□□□ -1.69
CCDC88A-213ENST00000476903 TRBV25-1A0A075B6N4 114 aa4.47□□□□□ -1.69
CCDC88A-213ENST00000476903 H7C1H1 209 aa4.47□□□□□ -1.69
CCDC88A-213ENST00000476903 CRPP02741 224 aa4.47□□□□□ -1.69
CCDC88A-213ENST00000476903 ANGP03950 147 aaKnown RBP4.47□□□□□ -1.69
CCDC88A-213ENST00000476903 TRGC1P0CF51 173 aa4.47□□□□□ -1.69
CCDC88A-213ENST00000476903 VPREB1P12018 145 aa4.47□□□□□ -1.69
CCDC88A-213ENST00000476903 KRTAP10-5P60370 271 aa4.47□□□□□ -1.69
CCDC88A-213ENST00000476903 MPV17L2Q567V2 206 aa4.47□□□□□ -1.69
CCDC88A-213ENST00000476903 ATRAIDQ6UW56 229 aa4.47□□□□□ -1.69
CCDC88A-213ENST00000476903 C9orf62Q8N4C0 152 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms