RNA–Protein interactions for RNA: ENST00000476519.1

SYNE1-223, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 4

Gene SYNE1, Length 582 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-223ENST00000476519 CT83Q5H943 113 aa7.86□□□□□ -1.15
SYNE1-223ENST00000476519 KRTAP26-1Q6PEX3 210 aa7.86□□□□□ -1.15
SYNE1-223ENST00000476519 GATD1Q8NB37 220 aa7.86□□□□□ -1.15
SYNE1-223ENST00000476519 CHAC1Q9BUX1 264 aa7.86□□□□□ -1.15
SYNE1-223ENST00000476519 EIF5A2Q9GZV4 153 aaKnown RBP7.86□□□□□ -1.15
SYNE1-223ENST00000476519 USP17L23D6RBM5 183 aa7.85□□□□□ -1.15
SYNE1-223ENST00000476519 PLA2G1BP04054 148 aaKnown RBP7.85□□□□□ -1.15
SYNE1-223ENST00000476519 LINC01620Q4KN68 170 aa7.85□□□□□ -1.15
SYNE1-223ENST00000476519 C20orf203Q8NBC4 194 aa7.85□□□□□ -1.15
SYNE1-223ENST00000476519 CLRN3Q8NCR9 226 aa7.85□□□□□ -1.15
SYNE1-223ENST00000476519 FAM231BA6NCW3 169 aa7.84□□□□□ -1.15
SYNE1-223ENST00000476519 UBE2L6O14933 153 aa7.84□□□□□ -1.15
SYNE1-223ENST00000476519 NCR2O95944 276 aa7.84□□□□□ -1.15
SYNE1-223ENST00000476519 HLA-DQA1P01909 254 aa7.84□□□□□ -1.15
SYNE1-223ENST00000476519 CEBPGP53567 150 aa7.84□□□□□ -1.15
SYNE1-223ENST00000476519 FAM210AQ96ND0 272 aa7.84□□□□□ -1.15
SYNE1-223ENST00000476519 IGLV4-60A0A075B6I1 120 aa7.83□□□□□ -1.16
SYNE1-223ENST00000476519 PRSS1P07477 247 aa7.83□□□□□ -1.16
SYNE1-223ENST00000476519 AMTP48728 403 aa7.83□□□□□ -1.16
SYNE1-223ENST00000476519 CLPSL2Q6UWE3 100 aa7.83□□□□□ -1.16
SYNE1-223ENST00000476519 SCXQ7RTU7 201 aa7.83□□□□□ -1.16
SYNE1-223ENST00000476519 LINC01551Q86U37 167 aa7.83□□□□□ -1.16
SYNE1-223ENST00000476519 BORCS7Q96B45 105 aa7.83□□□□□ -1.16
SYNE1-223ENST00000476519 SMIM7Q9BQ49 75 aa7.83□□□□□ -1.16
SYNE1-223ENST00000476519 GFRA4Q9GZZ7 299 aa7.83□□□□□ -1.16
SYNE1-223ENST00000476519 TRAV26-2A0A0B4J265 109 aa7.82□□□□□ -1.16
SYNE1-223ENST00000476519 ZNF727A8MUV8 499 aa7.82□□□□□ -1.16
SYNE1-223ENST00000476519 H7C423 109 aa7.82□□□□□ -1.16
SYNE1-223ENST00000476519 SRP19P09132 144 aaKnown RBP7.82□□□□□ -1.16
SYNE1-223ENST00000476519 LINC00528Q8N1L1 170 aa7.82□□□□□ -1.16
SYNE1-223ENST00000476519 C9orf163Q8N9P6 203 aa7.82□□□□□ -1.16
SYNE1-223ENST00000476519 TSKUQ8WUA8 353 aa7.82□□□□□ -1.16
SYNE1-223ENST00000476519 OSTCQ9NRP0 149 aa7.82□□□□□ -1.16
SYNE1-223ENST00000476519 IGLV10-54A0A075B6I4 117 aa7.81□□□□□ -1.16
SYNE1-223ENST00000476519 TRBV6-5A0A0K0K1A5 114 aa7.81□□□□□ -1.16
SYNE1-223ENST00000476519 A0A1B0GUT8 65 aa7.81□□□□□ -1.16
SYNE1-223ENST00000476519 FAM74A3Q4VXF1 159 aa7.81□□□□□ -1.16
SYNE1-223ENST00000476519 CIRBP-AS1Q8TBR5 109 aa7.81□□□□□ -1.16
SYNE1-223ENST00000476519 SDHAF1A6NFY7 115 aa7.8□□□□□ -1.16
SYNE1-223ENST00000476519 HIGD1CA8MV81 97 aa7.8□□□□□ -1.16
SYNE1-223ENST00000476519 I3L3M4 83 aa7.8□□□□□ -1.16
SYNE1-223ENST00000476519 DEFB104AQ8WTQ1 72 aa7.8□□□□□ -1.16
SYNE1-223ENST00000476519 RPL39LQ96EH5 51 aaKnown RBP7.8□□□□□ -1.16
SYNE1-223ENST00000476519 TMEM191AQ9H0A3 160 aa7.8□□□□□ -1.16
SYNE1-223ENST00000476519 APCSP02743 223 aa7.79□□□□□ -1.16
SYNE1-223ENST00000476519 PMCHP20382 165 aa7.79□□□□□ -1.16
SYNE1-223ENST00000476519 CNBPP62633 177 aaKnown RBP7.79□□□□□ -1.16
SYNE1-223ENST00000476519 TMEM241Q24JQ0 296 aa7.79□□□□□ -1.16
SYNE1-223ENST00000476519 AMMECR1LQ6DCA0 310 aa7.79□□□□□ -1.16
SYNE1-223ENST00000476519 CFAP161Q6P656 301 aa7.79□□□□□ -1.16
SYNE1-223ENST00000476519 A0A1B0GVG6 124 aa7.78□□□□□ -1.16
SYNE1-223ENST00000476519 hDV102S1A0JD36 115 aa7.78□□□□□ -1.16
SYNE1-223ENST00000476519 RIGQ13278 110 aa7.78□□□□□ -1.16
SYNE1-223ENST00000476519 SDIM1Q6ZPB5 146 aa7.78□□□□□ -1.16
SYNE1-223ENST00000476519 SMDT1Q9H4I9 107 aa7.78□□□□□ -1.16
SYNE1-223ENST00000476519 ST20Q9HBF5 79 aa7.78□□□□□ -1.16
SYNE1-223ENST00000476519 AP5S1Q9NUS5 200 aa7.78□□□□□ -1.16
SYNE1-223ENST00000476519 TRAV16A0A0A6YYK6 109 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-223ENST00000476519 FGF6P10767 208 aa7.77□□□□□ -1.17
SYNE1-223ENST00000476519 ZNF25P17030 456 aaPredicted RBP7.77□□□□□ -1.17
SYNE1-223ENST00000476519 RAB4AP20338 218 aa7.77□□□□□ -1.17
SYNE1-223ENST00000476519 RNASEKQ6P5S7 137 aaKnown RBP7.77□□□□□ -1.17
SYNE1-223ENST00000476519 MRAP2Q96G30 205 aa7.77□□□□□ -1.17
SYNE1-223ENST00000476519 V9GYV3 84 aa7.77□□□□□ -1.17
SYNE1-223ENST00000476519 PPP1R17O96001 155 aa7.76□□□□□ -1.17
SYNE1-223ENST00000476519 ESDP10768 282 aa7.76□□□□□ -1.17
SYNE1-223ENST00000476519 POLR2KP53803 58 aaKnown RBP7.76□□□□□ -1.17
SYNE1-223ENST00000476519 PEA15Q15121 130 aa7.76□□□□□ -1.17
SYNE1-223ENST00000476519 NUP35Q8NFH5 326 aa7.76□□□□□ -1.17
SYNE1-223ENST00000476519 ISOC2Q96AB3 205 aa7.76□□□□□ -1.17
SYNE1-223ENST00000476519 RNF185Q96GF1 192 aa7.76□□□□□ -1.17
SYNE1-223ENST00000476519 BTF3L4Q96K17 158 aa7.76□□□□□ -1.17
SYNE1-223ENST00000476519 NAT8BQ9UHF3 227 aa7.76□□□□□ -1.17
SYNE1-223ENST00000476519 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.75□□□□□ -1.17
SYNE1-223ENST00000476519 TRBV27A0A0K0K1C4 114 aa7.75□□□□□ -1.17
SYNE1-223ENST00000476519 IGKV2-29A2NJV5 120 aaPredicted RBP7.75□□□□□ -1.17
SYNE1-223ENST00000476519 GAGE12HA6NDE8 117 aa7.75□□□□□ -1.17
SYNE1-223ENST00000476519 VCYO14598 125 aa7.75□□□□□ -1.17
SYNE1-223ENST00000476519 RPL23P62829 140 aaKnown RBP7.75□□□□□ -1.17
SYNE1-223ENST00000476519 CHCHD10Q8WYQ3 142 aaPredicted RBP7.75□□□□□ -1.17
SYNE1-223ENST00000476519 TMEM101Q96IK0 257 aa7.75□□□□□ -1.17
SYNE1-223ENST00000476519 NAT8Q9UHE5 227 aa7.75□□□□□ -1.17
SYNE1-223ENST00000476519 IGHV3-64A0A075B6Q5 118 aa7.74□□□□□ -1.17
SYNE1-223ENST00000476519 IGKV3OR2-268A0A0C4DH90 116 aa7.74□□□□□ -1.17
SYNE1-223ENST00000476519 C9JQL5 133 aa7.74□□□□□ -1.17
SYNE1-223ENST00000476519 J3QL48 77 aa7.74□□□□□ -1.17
SYNE1-223ENST00000476519 GAS8-AS1O95177 125 aa7.74□□□□□ -1.17
SYNE1-223ENST00000476519 TSHBP01222 138 aa7.74□□□□□ -1.17
SYNE1-223ENST00000476519 SLPIP03973 132 aa7.74□□□□□ -1.17
SYNE1-223ENST00000476519 KRTAP10-4P60372 401 aaPredicted RBP7.74□□□□□ -1.17
SYNE1-223ENST00000476519 AMN1Q8IY45 258 aa7.74□□□□□ -1.17
SYNE1-223ENST00000476519 OR5A1Q8NGJ0 315 aa7.74□□□□□ -1.17
SYNE1-223ENST00000476519 LRP1Q07954 4544 aaKnown RBP7.73□□□□□ -1.17
SYNE1-223ENST00000476519 SMIM27A0A1W2PRY6 76 aa7.73□□□□□ -1.17
SYNE1-223ENST00000476519 KRTAP29-1A8MX34 341 aaPredicted RBP7.73□□□□□ -1.17
SYNE1-223ENST00000476519 RPS10P46783 165 aaKnown RBP7.73□□□□□ -1.17
SYNE1-223ENST00000476519 CIRBPQ14011 172 aaKnown RBP7.73□□□□□ -1.17
SYNE1-223ENST00000476519 ADIRFQ15847 76 aa7.73□□□□□ -1.17
SYNE1-223ENST00000476519 MRPL52Q86TS9 123 aaKnown RBP7.73□□□□□ -1.17
SYNE1-223ENST00000476519 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms