RNA–Protein interactions for RNA: ENST00000475873.2

USP4-209, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 536 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-209ENST00000475873 LCN15Q6UWW0 184 aa2.82□□□□□ -1.96
USP4-209ENST00000475873 TMEM183AQ8IXX5 376 aa2.82□□□□□ -1.96
USP4-209ENST00000475873 LINC00479Q96M42 142 aa2.82□□□□□ -1.96
USP4-209ENST00000475873 SLC50A1Q9BRV3 221 aa2.82□□□□□ -1.96
USP4-209ENST00000475873 DERL1Q9BUN8 251 aa2.82□□□□□ -1.96
USP4-209ENST00000475873 GFRA4Q9GZZ7 299 aa2.82□□□□□ -1.96
USP4-209ENST00000475873 HIGD1AQ9Y241 93 aa2.82□□□□□ -1.96
USP4-209ENST00000475873 PKIGQ9Y2B9 76 aa2.82□□□□□ -1.96
USP4-209ENST00000475873 IGLV1-50A0A075B6I6 118 aa2.81□□□□□ -1.96
USP4-209ENST00000475873 C3orf85A0A1B0GTC6 90 aa2.81□□□□□ -1.96
USP4-209ENST00000475873 hDV102S1A0JD36 115 aa2.81□□□□□ -1.96
USP4-209ENST00000475873 GAGE12JA6NER3 117 aa2.81□□□□□ -1.96
USP4-209ENST00000475873 KRTAP4-16G5E9R7 235 aaPredicted RBP2.81□□□□□ -1.96
USP4-209ENST00000475873 GABARAPH6UMI1 98 aa2.81□□□□□ -1.96
USP4-209ENST00000475873 K7EPK0 472 aa2.81□□□□□ -1.96
USP4-209ENST00000475873 M0R2P5 195 aa2.81□□□□□ -1.96
USP4-209ENST00000475873 GABARAPO95166 117 aa2.81□□□□□ -1.96
USP4-209ENST00000475873 CFDP00746 253 aaPredicted RBP2.81□□□□□ -1.96
USP4-209ENST00000475873 GPX1P07203 203 aa2.81□□□□□ -1.96
USP4-209ENST00000475873 NMBP08949 121 aa2.81□□□□□ -1.96
USP4-209ENST00000475873 NTF3P20783 257 aa2.81□□□□□ -1.96
USP4-209ENST00000475873 GNG5P63218 68 aa2.81□□□□□ -1.96
USP4-209ENST00000475873 HSD52Q0P140 79 aa2.81□□□□□ -1.96
USP4-209ENST00000475873 Q0VG73 95 aa2.81□□□□□ -1.96
USP4-209ENST00000475873 GAGE4Q13068 117 aa2.81□□□□□ -1.96
USP4-209ENST00000475873 ASB16-AS1Q495Z4 193 aa2.81□□□□□ -1.96
USP4-209ENST00000475873 GAGE13Q4V321 117 aa2.81□□□□□ -1.96
USP4-209ENST00000475873 HIST3H2BBQ8N257 126 aa2.81□□□□□ -1.96
USP4-209ENST00000475873 CYB561D1Q8N8Q1 229 aa2.81□□□□□ -1.96
USP4-209ENST00000475873 FER1L6-AS1Q8NA97 138 aa2.81□□□□□ -1.96
USP4-209ENST00000475873 GATD1Q8NB37 220 aa2.81□□□□□ -1.96
USP4-209ENST00000475873 OR10G7Q8NGN6 311 aa2.81□□□□□ -1.96
USP4-209ENST00000475873 OR1S1Q8NH92 325 aa2.81□□□□□ -1.96
USP4-209ENST00000475873 PRADC1Q9BSG0 188 aa2.81□□□□□ -1.96
USP4-209ENST00000475873 ZNF471Q9BX82 626 aaPredicted RBP2.81□□□□□ -1.96
USP4-209ENST00000475873 SAMD10Q9BYL1 202 aa2.81□□□□□ -1.96
USP4-209ENST00000475873 RBKSQ9H477 322 aa2.81□□□□□ -1.96
USP4-209ENST00000475873 ACOT13Q9NPJ3 140 aa2.81□□□□□ -1.96
USP4-209ENST00000475873 LYRM2Q9NU23 88 aaPredicted RBP2.81□□□□□ -1.96
USP4-209ENST00000475873 NAT8BQ9UHF3 227 aa2.81□□□□□ -1.96
USP4-209ENST00000475873 IGKV2-40A0A087WW87 121 aaPredicted RBP2.8□□□□□ -1.96
USP4-209ENST00000475873 COLCA2A8K830 154 aa2.8□□□□□ -1.96
USP4-209ENST00000475873 RHODO00212 210 aa2.8□□□□□ -1.96
USP4-209ENST00000475873 GNRH2O43555 120 aa2.8□□□□□ -1.96
USP4-209ENST00000475873 HYPMO75409 117 aa2.8□□□□□ -1.96
USP4-209ENST00000475873 IGKV2D-40P01614 121 aaPredicted RBP2.8□□□□□ -1.96
USP4-209ENST00000475873 LINC00869P0C866 280 aa2.8□□□□□ -1.96
USP4-209ENST00000475873 AKAIN1P0CW23 69 aa2.8□□□□□ -1.96
USP4-209ENST00000475873 FABP4P15090 132 aa2.8□□□□□ -1.96
USP4-209ENST00000475873 PGAM2P15259 253 aa2.8□□□□□ -1.96
USP4-209ENST00000475873 RAB5AP20339 215 aa2.8□□□□□ -1.96
USP4-209ENST00000475873 ATP6V0CP27449 155 aa2.8□□□□□ -1.96
USP4-209ENST00000475873 NDUFA6P56556 154 aa2.8□□□□□ -1.96
USP4-209ENST00000475873 TAS2R46P59540 309 aa2.8□□□□□ -1.96
USP4-209ENST00000475873 SRPXP78539 464 aa2.8□□□□□ -1.96
USP4-209ENST00000475873 MPV17L2Q567V2 206 aa2.8□□□□□ -1.96
USP4-209ENST00000475873 CLPSL2Q6UWE3 100 aa2.8□□□□□ -1.96
USP4-209ENST00000475873 ALKAL2Q6UX46 152 aa2.8□□□□□ -1.96
USP4-209ENST00000475873 CYP2G1PQ6ZSU1 146 aa2.8□□□□□ -1.96
USP4-209ENST00000475873 FAM231DQ6ZW35 169 aa2.8□□□□□ -1.96
USP4-209ENST00000475873 MRPL55Q7Z7F7 128 aaKnown RBP2.8□□□□□ -1.96
USP4-209ENST00000475873 C5orf17Q8NAS9 161 aa2.8□□□□□ -1.96
USP4-209ENST00000475873 SCGB3A2Q96PL1 93 aa2.8□□□□□ -1.96
USP4-209ENST00000475873 MIEN1Q9BRT3 115 aa2.8□□□□□ -1.96
USP4-209ENST00000475873 DUSP21Q9H596 190 aa2.8□□□□□ -1.96
USP4-209ENST00000475873 WDR83OSQ9Y284 106 aa2.8□□□□□ -1.96
USP4-209ENST00000475873 GAGE12HA6NDE8 117 aa2.79□□□□□ -1.96
USP4-209ENST00000475873 IFITM10A6NMD0 228 aa2.79□□□□□ -1.96
USP4-209ENST00000475873 H0Y9J4 135 aa2.79□□□□□ -1.96
USP4-209ENST00000475873 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.79□□□□□ -1.96
USP4-209ENST00000475873 EIF4EBP3O60516 100 aaPredicted RBP2.79□□□□□ -1.96
USP4-209ENST00000475873 NDUFB4O95168 129 aa2.79□□□□□ -1.96
USP4-209ENST00000475873 GZMBP10144 247 aa2.79□□□□□ -1.96
USP4-209ENST00000475873 MEF2BQ02080 365 aaPredicted RBP2.79□□□□□ -1.96
USP4-209ENST00000475873 KRTAP6-3Q3LI67 103 aa2.79□□□□□ -1.96
USP4-209ENST00000475873 LCE1DQ5T752 114 aa2.79□□□□□ -1.96
USP4-209ENST00000475873 RASL11AQ6T310 242 aa2.79□□□□□ -1.96
USP4-209ENST00000475873 PQLC2Q6ZP29 291 aa2.79□□□□□ -1.96
USP4-209ENST00000475873 GOLT1AQ6ZVE7 132 aa2.79□□□□□ -1.96
USP4-209ENST00000475873 LHFPL1Q86WI0 220 aa2.79□□□□□ -1.96
USP4-209ENST00000475873 KRTAP11-1Q8IUC1 163 aa2.79□□□□□ -1.96
USP4-209ENST00000475873 C14orf178Q8N769 122 aaPredicted RBP2.79□□□□□ -1.96
USP4-209ENST00000475873 CHCHD7Q9BUK0 85 aa2.79□□□□□ -1.96
USP4-209ENST00000475873 VAMP8Q9BV40 100 aa2.79□□□□□ -1.96
USP4-209ENST00000475873 MLST8Q9BVC4 326 aa2.79□□□□□ -1.96
USP4-209ENST00000475873 PRR34Q9NV39 138 aa2.79□□□□□ -1.96
USP4-209ENST00000475873 PXMP4Q9Y6I8 212 aa2.79□□□□□ -1.96
USP4-209ENST00000475873 A0A087WWC5 75 aa2.78□□□□□ -1.96
USP4-209ENST00000475873 TRDV1A0A1B0GX56 115 aa2.78□□□□□ -1.96
USP4-209ENST00000475873 C9JAW5 83 aa2.78□□□□□ -1.96
USP4-209ENST00000475873 G3V3Q6 166 aa2.78□□□□□ -1.96
USP4-209ENST00000475873 SIX6O95475 246 aa2.78□□□□□ -1.96
USP4-209ENST00000475873 SEC11BP0C7V7 166 aa2.78□□□□□ -1.96
USP4-209ENST00000475873 IAPPP10997 89 aa2.78□□□□□ -1.96
USP4-209ENST00000475873 INPP1P49441 399 aa2.78□□□□□ -1.96
USP4-209ENST00000475873 GABARAPL2P60520 117 aa2.78□□□□□ -1.96
USP4-209ENST00000475873 C10orf91Q5T1B1 145 aa2.78□□□□□ -1.96
USP4-209ENST00000475873 C15orf56Q8N910 161 aa2.78□□□□□ -1.96
USP4-209ENST00000475873 OR5A1Q8NGJ0 315 aa2.78□□□□□ -1.96
USP4-209ENST00000475873 AP1S3Q96PC3 154 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms