RNA–Protein interactions for RNA: ENST00000472815.5

HIF3A-206, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 2 BASIC

Gene HIF3A, Length 1,709 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-206ENST00000472815 HHLA3Q9XRX5 114 aa10.36□□□□□ -0.75
HIF3A-206ENST00000472815 DEFB4AO15263 64 aa10.36□□□□□ -0.75
HIF3A-206ENST00000472815 ATP5G1P05496 136 aa10.36□□□□□ -0.75
HIF3A-206ENST00000472815 PKIAP61925 76 aa10.36□□□□□ -0.75
HIF3A-206ENST00000472815 SMAGPQ0VAQ4 97 aa10.36□□□□□ -0.75
HIF3A-206ENST00000472815 PAPPA-AS1Q5QFB9 102 aa10.36□□□□□ -0.75
HIF3A-206ENST00000472815 PRO0255Q9UI72 69 aa10.36□□□□□ -0.75
HIF3A-206ENST00000472815 DNAH3Q8TD57 4116 aa10.35□□□□□ -0.75
HIF3A-206ENST00000472815 TRAV12-1A0A0B4J245 112 aa10.35□□□□□ -0.75
HIF3A-206ENST00000472815 GAGE12JA6NER3 117 aa10.35□□□□□ -0.75
HIF3A-206ENST00000472815 UBE2D3P61077 147 aa10.35□□□□□ -0.75
HIF3A-206ENST00000472815 UBE2D2P62837 147 aa10.35□□□□□ -0.75
HIF3A-206ENST00000472815 GAGE1Q13065 139 aa10.35□□□□□ -0.75
HIF3A-206ENST00000472815 GAGE4Q13068 117 aa10.35□□□□□ -0.75
HIF3A-206ENST00000472815 GAGE5Q13069 117 aa10.35□□□□□ -0.75
HIF3A-206ENST00000472815 GAGE13Q4V321 117 aa10.35□□□□□ -0.75
HIF3A-206ENST00000472815 C11orf68Q9H3H3 251 aaKnown RBP10.35□□□□□ -0.75
HIF3A-206ENST00000472815 ZMAT4Q9H898 229 aa10.35□□□□□ -0.75
HIF3A-206ENST00000472815 TRAV9-2A0A087WT02 112 aa10.34□□□□□ -0.75
HIF3A-206ENST00000472815 TMEM97Q5BJF2 176 aa10.34□□□□□ -0.75
HIF3A-206ENST00000472815 PHLDA1Q8WV24 401 aaPredicted RBP10.34□□□□□ -0.75
HIF3A-206ENST00000472815 NPSP0C0P6 89 aa10.33□□□□□ -0.76
HIF3A-206ENST00000472815 SPATA25Q9BR10 227 aa10.33□□□□□ -0.76
HIF3A-206ENST00000472815 Q9UF83 564 aa10.33□□□□□ -0.76
HIF3A-206ENST00000472815 PAM16Q9Y3D7 125 aa10.33□□□□□ -0.76
HIF3A-206ENST00000472815 NBEAL2Q6ZNJ1 2754 aa10.33□□□□□ -0.76
HIF3A-206ENST00000472815 IGHV3-38A0A0C4DH36 116 aa10.33□□□□□ -0.76
HIF3A-206ENST00000472815 RPL39P62891 51 aaKnown RBP10.33□□□□□ -0.76
HIF3A-206ENST00000472815 ATOH7Q8N100 152 aa10.33□□□□□ -0.76
HIF3A-206ENST00000472815 ZNF664Q8N3J9 261 aa10.33□□□□□ -0.76
HIF3A-206ENST00000472815 DEFB104AQ8WTQ1 72 aa10.33□□□□□ -0.76
HIF3A-206ENST00000472815 GTSF1LQ9H1H1 148 aa10.33□□□□□ -0.76
HIF3A-206ENST00000472815 A0A087WX48 190 aa10.32□□□□□ -0.76
HIF3A-206ENST00000472815 IGIPA6NJ69 53 aa10.32□□□□□ -0.76
HIF3A-206ENST00000472815 PCP4L1A6NKN8 68 aa10.32□□□□□ -0.76
HIF3A-206ENST00000472815 CRYBA4P53673 196 aa10.32□□□□□ -0.76
HIF3A-206ENST00000472815 ODF1Q14990 250 aa10.32□□□□□ -0.76
HIF3A-206ENST00000472815 DEFB121Q5J5C9 76 aa10.32□□□□□ -0.76
HIF3A-206ENST00000472815 PYGO1Q9Y3Y4 419 aa10.32□□□□□ -0.76
HIF3A-206ENST00000472815 PAX4O43316 350 aa10.31□□□□□ -0.76
HIF3A-206ENST00000472815 PLNP26678 52 aa10.31□□□□□ -0.76
HIF3A-206ENST00000472815 SPATA45Q537H7 98 aa10.31□□□□□ -0.76
HIF3A-206ENST00000472815 BAALCQ8WXS3 180 aa10.31□□□□□ -0.76
HIF3A-206ENST00000472815 SPANXA1Q9NS26 97 aa10.31□□□□□ -0.76
HIF3A-206ENST00000472815 CELA1Q9UNI1 258 aa10.31□□□□□ -0.76
HIF3A-206ENST00000472815 K7EIL1 84 aa10.3□□□□□ -0.76
HIF3A-206ENST00000472815 DPM2O94777 84 aa10.3□□□□□ -0.76
HIF3A-206ENST00000472815 PMCHL2Q9BQD1 86 aa10.3□□□□□ -0.76
HIF3A-206ENST00000472815 RETNQ9HD89 108 aa10.3□□□□□ -0.76
HIF3A-206ENST00000472815 TRBV25-1A0A075B6N4 114 aa10.3□□□□□ -0.76
HIF3A-206ENST00000472815 F8VRH5 84 aa10.3□□□□□ -0.76
HIF3A-206ENST00000472815 IGKCP01834 107 aa10.3□□□□□ -0.76
HIF3A-206ENST00000472815 GYPEP15421 78 aa10.3□□□□□ -0.76
HIF3A-206ENST00000472815 PMVKQ15126 192 aa10.3□□□□□ -0.76
HIF3A-206ENST00000472815 CHCHD7Q9BUK0 85 aa10.3□□□□□ -0.76
HIF3A-206ENST00000472815 CHTOPQ9Y3Y2 248 aaKnown RBP10.3□□□□□ -0.76
HIF3A-206ENST00000472815 SBSPONQ8IVN8 264 aa10.29□□□□□ -0.76
HIF3A-206ENST00000472815 LOC100131303A0A0U1RQF7 123 aa10.28□□□□□ -0.76
HIF3A-206ENST00000472815 F5H768 121 aa10.28□□□□□ -0.76
HIF3A-206ENST00000472815 H7C423 109 aa10.28□□□□□ -0.76
HIF3A-206ENST00000472815 UBE2L6O14933 153 aa10.28□□□□□ -0.76
HIF3A-206ENST00000472815 PRB2P02812 416 aaPredicted RBP10.28□□□□□ -0.76
HIF3A-206ENST00000472815 DGAT2L7PQ6IED9 249 aa10.28□□□□□ -0.76
HIF3A-206ENST00000472815 TIMM21Q9BVV7 248 aa10.28□□□□□ -0.76
HIF3A-206ENST00000472815 PRO1933Q9H354 126 aa10.28□□□□□ -0.76
HIF3A-206ENST00000472815 LINC00694P0DN24 101 aa10.27□□□□□ -0.76
HIF3A-206ENST00000472815 SH2D6Q7Z4S9 175 aa10.27□□□□□ -0.76
HIF3A-206ENST00000472815 ATP6V0E2Q8NHE4 81 aa10.27□□□□□ -0.76
HIF3A-206ENST00000472815 TM2D3Q9BRN9 247 aa10.27□□□□□ -0.76
HIF3A-206ENST00000472815 TMEM243Q9BU79 118 aa10.27□□□□□ -0.76
HIF3A-206ENST00000472815 VCX2Q9H322 139 aa10.27□□□□□ -0.76
HIF3A-206ENST00000472815 MRPL35Q9NZE8 188 aaKnown RBP10.27□□□□□ -0.76
HIF3A-206ENST00000472815 PRSS29PA6NIE9 313 aa10.27□□□□□ -0.77
HIF3A-206ENST00000472815 UBE2D4Q9Y2X8 147 aa10.27□□□□□ -0.77
HIF3A-206ENST00000472815 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.26□□□□□ -0.77
HIF3A-206ENST00000472815 IGKV2-29A2NJV5 120 aaPredicted RBP10.26□□□□□ -0.77
HIF3A-206ENST00000472815 CST9LQ9H4G1 147 aa10.26□□□□□ -0.77
HIF3A-206ENST00000472815 IGLV4-3A0A075B6K6 122 aa10.25□□□□□ -0.77
HIF3A-206ENST00000472815 TRAV26-1A0A087WT03 109 aa10.25□□□□□ -0.77
HIF3A-206ENST00000472815 TRBV6-8A0A0A6YYG3 113 aa10.25□□□□□ -0.77
HIF3A-206ENST00000472815 hDV102S1A0JD36 115 aa10.25□□□□□ -0.77
HIF3A-206ENST00000472815 HTN3P15516 51 aa10.25□□□□□ -0.77
HIF3A-206ENST00000472815 C2orf88Q9BSF0 95 aa10.25□□□□□ -0.77
HIF3A-206ENST00000472815 CSDC2Q9Y534 153 aaKnown RBP10.25□□□□□ -0.77
HIF3A-206ENST00000472815 A0A0J9YWU9 116 aa10.24□□□□□ -0.77
HIF3A-206ENST00000472815 MRPS36P82909 103 aaKnown RBP10.24□□□□□ -0.77
HIF3A-206ENST00000472815 MRPL23Q16540 153 aaKnown RBP10.24□□□□□ -0.77
HIF3A-206ENST00000472815 C12orf74Q32Q52 190 aa10.24□□□□□ -0.77
HIF3A-206ENST00000472815 MAJINQ3KP22 176 aa10.24□□□□□ -0.77
HIF3A-206ENST00000472815 AMMECR1LQ6DCA0 310 aa10.24□□□□□ -0.77
HIF3A-206ENST00000472815 MRPL52Q86TS9 123 aaKnown RBP10.24□□□□□ -0.77
HIF3A-206ENST00000472815 MRAPQ8TCY5 172 aa10.24□□□□□ -0.77
HIF3A-206ENST00000472815 TMEM101Q96IK0 257 aa10.24□□□□□ -0.77
HIF3A-206ENST00000472815 ZNF25P17030 456 aaPredicted RBP10.24□□□□□ -0.77
HIF3A-206ENST00000472815 DDTP30046 118 aa10.24□□□□□ -0.77
HIF3A-206ENST00000472815 NTM-AS1Q6ZSK4 140 aa10.24□□□□□ -0.77
HIF3A-206ENST00000472815 C11orf45Q8TAV5 145 aa10.24□□□□□ -0.77
HIF3A-206ENST00000472815 UQCR10Q9UDW1 63 aa10.24□□□□□ -0.77
HIF3A-206ENST00000472815 ICOSQ9Y6W8 199 aa10.24□□□□□ -0.77
HIF3A-206ENST00000472815 A0A0J9YY99 117 aa10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms