RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 GTSF1Q8WW33 167 aa10.22□□□□□ -0.77
CCDC88B-205ENST00000472524 PGLYRP4Q96LB8 373 aa10.22□□□□□ -0.77
CCDC88B-205ENST00000472524 IGLV4-60A0A075B6I1 120 aa10.21□□□□□ -0.77
CCDC88B-205ENST00000472524 UBE2L6O14933 153 aa10.21□□□□□ -0.77
CCDC88B-205ENST00000472524 PRSS1P07477 247 aa10.21□□□□□ -0.77
CCDC88B-205ENST00000472524 AMTP48728 403 aa10.21□□□□□ -0.77
CCDC88B-205ENST00000472524 COTL1Q14019 142 aa10.21□□□□□ -0.77
CCDC88B-205ENST00000472524 KRTAP26-1Q6PEX3 210 aa10.21□□□□□ -0.77
CCDC88B-205ENST00000472524 GATD1Q8NB37 220 aa10.21□□□□□ -0.77
CCDC88B-205ENST00000472524 CHAC1Q9BUX1 264 aa10.21□□□□□ -0.77
CCDC88B-205ENST00000472524 SMIM15Q7Z3B0 74 aa10.2□□□□□ -0.78
CCDC88B-205ENST00000472524 LYPD6BQ8NI32 183 aa10.2□□□□□ -0.78
CCDC88B-205ENST00000472524 GFRA4Q9GZZ7 299 aa10.2□□□□□ -0.78
CCDC88B-205ENST00000472524 KRTAP29-1A8MX34 341 aaPredicted RBP10.19□□□□□ -0.78
CCDC88B-205ENST00000472524 FOXA3P55318 350 aaPredicted RBP10.19□□□□□ -0.78
CCDC88B-205ENST00000472524 CIRBP-AS1Q8TBR5 109 aa10.19□□□□□ -0.78
CCDC88B-205ENST00000472524 RPL39LQ96EH5 51 aaKnown RBP10.19□□□□□ -0.78
CCDC88B-205ENST00000472524 EIF5A2Q9GZV4 153 aaKnown RBP10.19□□□□□ -0.78
CCDC88B-205ENST00000472524 A0A1B0GUV1 79 aa10.18□□□□□ -0.78
CCDC88B-205ENST00000472524 A8MWL6 223 aa10.18□□□□□ -0.78
CCDC88B-205ENST00000472524 FAM231DQ6ZW35 169 aa10.18□□□□□ -0.78
CCDC88B-205ENST00000472524 SMIM7Q9BQ49 75 aa10.18□□□□□ -0.78
CCDC88B-205ENST00000472524 TRAV8-4A0A0B4J246 113 aa10.17□□□□□ -0.78
CCDC88B-205ENST00000472524 DGAT2L7PQ6IED9 249 aa10.16□□□□□ -0.78
CCDC88B-205ENST00000472524 IGKV3OR2-268A0A0C4DH90 116 aa10.15□□□□□ -0.78
CCDC88B-205ENST00000472524 CT83Q5H943 113 aa10.15□□□□□ -0.78
CCDC88B-205ENST00000472524 C9orf163Q8N9P6 203 aa10.15□□□□□ -0.78
CCDC88B-205ENST00000472524 BORCS7Q96B45 105 aa10.15□□□□□ -0.78
CCDC88B-205ENST00000472524 FAM210AQ96ND0 272 aa10.15□□□□□ -0.78
CCDC88B-205ENST00000472524 PKHD1L1Q86WI1 4243 aa10.15□□□□□ -0.78
CCDC88B-205ENST00000472524 LRP1Q07954 4544 aaKnown RBP10.14□□□□□ -0.79
CCDC88B-205ENST00000472524 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.14□□□□□ -0.79
CCDC88B-205ENST00000472524 A0A1B0GVG6 124 aa10.14□□□□□ -0.79
CCDC88B-205ENST00000472524 hDV102S1A0JD36 115 aa10.14□□□□□ -0.79
CCDC88B-205ENST00000472524 IGKV2-29A2NJV5 120 aaPredicted RBP10.14□□□□□ -0.79
CCDC88B-205ENST00000472524 ZNF727A8MUV8 499 aa10.14□□□□□ -0.79
CCDC88B-205ENST00000472524 APCSP02743 223 aa10.14□□□□□ -0.79
CCDC88B-205ENST00000472524 AMMECR1LQ6DCA0 310 aa10.14□□□□□ -0.79
CCDC88B-205ENST00000472524 TEX261Q6UWH6 196 aa10.14□□□□□ -0.79
CCDC88B-205ENST00000472524 LINC01551Q86U37 167 aa10.14□□□□□ -0.79
CCDC88B-205ENST00000472524 CLRN3Q8NCR9 226 aa10.14□□□□□ -0.79
CCDC88B-205ENST00000472524 SDHAF1A6NFY7 115 aa10.13□□□□□ -0.79
CCDC88B-205ENST00000472524 NCR2O95944 276 aa10.13□□□□□ -0.79
CCDC88B-205ENST00000472524 SRP19P09132 144 aaKnown RBP10.13□□□□□ -0.79
CCDC88B-205ENST00000472524 KRTAP10-4P60372 401 aaPredicted RBP10.13□□□□□ -0.79
CCDC88B-205ENST00000472524 RNASEKQ6P5S7 137 aaKnown RBP10.13□□□□□ -0.79
CCDC88B-205ENST00000472524 HMCN2Q8NDA2 5059 aa10.12□□□□□ -0.79
CCDC88B-205ENST00000472524 HIGD1CA8MV81 97 aa10.12□□□□□ -0.79
CCDC88B-205ENST00000472524 TSKUQ8WUA8 353 aa10.12□□□□□ -0.79
CCDC88B-205ENST00000472524 A0A1B0GUT8 65 aa10.11□□□□□ -0.79
CCDC88B-205ENST00000472524 GAGE12HA6NDE8 117 aa10.11□□□□□ -0.79
CCDC88B-205ENST00000472524 NDUFS6O75380 124 aaKnown RBP10.11□□□□□ -0.79
CCDC88B-205ENST00000472524 GAS8-AS1O95177 125 aa10.11□□□□□ -0.79
CCDC88B-205ENST00000472524 PMCHP20382 165 aa10.11□□□□□ -0.79
CCDC88B-205ENST00000472524 OSTCQ9NRP0 149 aa10.11□□□□□ -0.79
CCDC88B-205ENST00000472524 AP5S1Q9NUS5 200 aa10.11□□□□□ -0.79
CCDC88B-205ENST00000472524 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP10.11□□□□□ -0.79
CCDC88B-205ENST00000472524 PANO1I0J062 215 aa10.1□□□□□ -0.79
CCDC88B-205ENST00000472524 I3L3M4 83 aa10.1□□□□□ -0.79
CCDC88B-205ENST00000472524 FAT3Q8TDW7 4589 aa10.09□□□□□ -0.79
CCDC88B-205ENST00000472524 TRBV6-5A0A0K0K1A5 114 aa10.09□□□□□ -0.79
CCDC88B-205ENST00000472524 H7C423 109 aa10.09□□□□□ -0.79
CCDC88B-205ENST00000472524 FGF6P10767 208 aa10.09□□□□□ -0.79
CCDC88B-205ENST00000472524 CNBPP62633 177 aaKnown RBP10.09□□□□□ -0.79
CCDC88B-205ENST00000472524 TMEM191AQ9H0A3 160 aa10.09□□□□□ -0.79
CCDC88B-205ENST00000472524 ST20Q9HBF5 79 aa10.09□□□□□ -0.79
CCDC88B-205ENST00000472524 TMEM242Q9NWH2 141 aa10.09□□□□□ -0.79
CCDC88B-205ENST00000472524 RPL37AP61513 92 aaKnown RBP10.08□□□□□ -0.8
CCDC88B-205ENST00000472524 SDIM1Q6ZPB5 146 aa10.08□□□□□ -0.8
CCDC88B-205ENST00000472524 AMN1Q8IY45 258 aa10.08□□□□□ -0.8
CCDC88B-205ENST00000472524 C15orf56Q8N910 161 aa10.08□□□□□ -0.8
CCDC88B-205ENST00000472524 RNF185Q96GF1 192 aa10.08□□□□□ -0.8
CCDC88B-205ENST00000472524 V9GYV3 84 aa10.08□□□□□ -0.8
CCDC88B-205ENST00000472524 IGHV3-64A0A075B6Q5 118 aa10.07□□□□□ -0.8
CCDC88B-205ENST00000472524 TRAV16A0A0A6YYK6 109 aaPredicted RBP10.07□□□□□ -0.8
CCDC88B-205ENST00000472524 FAM231BA6NCW3 169 aa10.07□□□□□ -0.8
CCDC88B-205ENST00000472524 TSHBP01222 138 aa10.07□□□□□ -0.8
CCDC88B-205ENST00000472524 SLPIP03973 132 aa10.07□□□□□ -0.8
CCDC88B-205ENST00000472524 HIGD2BQ4VC39 106 aa10.07□□□□□ -0.8
CCDC88B-205ENST00000472524 CHCHD10Q8WYQ3 142 aaPredicted RBP10.07□□□□□ -0.8
CCDC88B-205ENST00000472524 ISOC2Q96AB3 205 aa10.07□□□□□ -0.8
CCDC88B-205ENST00000472524 SMKR1H3BMG3 65 aa10.06□□□□□ -0.8
CCDC88B-205ENST00000472524 ZNF25P17030 456 aaPredicted RBP10.06□□□□□ -0.8
CCDC88B-205ENST00000472524 RAB4AP20338 218 aa10.06□□□□□ -0.8
CCDC88B-205ENST00000472524 RPS10P46783 165 aaKnown RBP10.06□□□□□ -0.8
CCDC88B-205ENST00000472524 RIGQ13278 110 aa10.06□□□□□ -0.8
CCDC88B-205ENST00000472524 ADIRFQ15847 76 aa10.06□□□□□ -0.8
CCDC88B-205ENST00000472524 TMEM241Q24JQ0 296 aa10.06□□□□□ -0.8
CCDC88B-205ENST00000472524 SERTAD4-AS1Q5TG53 156 aa10.06□□□□□ -0.8
CCDC88B-205ENST00000472524 CFAP161Q6P656 301 aa10.06□□□□□ -0.8
CCDC88B-205ENST00000472524 NUP35Q8NFH5 326 aa10.06□□□□□ -0.8
CCDC88B-205ENST00000472524 MRAP2Q96G30 205 aa10.06□□□□□ -0.8
CCDC88B-205ENST00000472524 TMEM101Q96IK0 257 aa10.06□□□□□ -0.8
CCDC88B-205ENST00000472524 BTF3L4Q96K17 158 aa10.06□□□□□ -0.8
CCDC88B-205ENST00000472524 RPL23P62829 140 aaKnown RBP10.05□□□□□ -0.8
CCDC88B-205ENST00000472524 FAM74A3Q4VXF1 159 aa10.05□□□□□ -0.8
CCDC88B-205ENST00000472524 OR5A1Q8NGJ0 315 aa10.05□□□□□ -0.8
CCDC88B-205ENST00000472524 C9JQL5 133 aa10.04□□□□□ -0.8
CCDC88B-205ENST00000472524 CHTF8P0CG12 524 aa10.04□□□□□ -0.8
CCDC88B-205ENST00000472524 ESDP10768 282 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms