RNA–Protein interactions for RNA: ENST00000470942.1

HDAC6-218, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 668 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-218ENST00000470942 ADIRFQ15847 76 aa10.35□□□□□ -0.75
HDAC6-218ENST00000470942 MIAQ16674 131 aa10.35□□□□□ -0.75
HDAC6-218ENST00000470942 CLPSL2Q6UWE3 100 aa10.35□□□□□ -0.75
HDAC6-218ENST00000470942 LINC00269Q8N2A0 174 aa10.35□□□□□ -0.75
HDAC6-218ENST00000470942 ISOC2Q96AB3 205 aa10.35□□□□□ -0.75
HDAC6-218ENST00000470942 RPL39LQ96EH5 51 aaKnown RBP10.35□□□□□ -0.75
HDAC6-218ENST00000470942 FAM231BA6NCW3 169 aa10.34□□□□□ -0.75
HDAC6-218ENST00000470942 NAT8Q9UHE5 227 aa10.34□□□□□ -0.75
HDAC6-218ENST00000470942 V9GYV3 84 aa10.34□□□□□ -0.75
HDAC6-218ENST00000470942 ABCA13Q86UQ4 5058 aa10.34□□□□□ -0.75
HDAC6-218ENST00000470942 HLA-DQA1P01909 254 aa10.33□□□□□ -0.76
HDAC6-218ENST00000470942 SMDT1Q9H4I9 107 aa10.33□□□□□ -0.76
HDAC6-218ENST00000470942 RIGQ13278 110 aa10.32□□□□□ -0.76
HDAC6-218ENST00000470942 TMEM191AQ9H0A3 160 aa10.32□□□□□ -0.76
HDAC6-218ENST00000470942 PRR34Q9NV39 138 aa10.32□□□□□ -0.76
HDAC6-218ENST00000470942 A0A1B0GUV1 79 aa10.31□□□□□ -0.76
HDAC6-218ENST00000470942 SDHAF1A6NFY7 115 aa10.31□□□□□ -0.76
HDAC6-218ENST00000470942 HAMPP81172 84 aa10.31□□□□□ -0.76
HDAC6-218ENST00000470942 REG3AQ06141 175 aa10.31□□□□□ -0.76
HDAC6-218ENST00000470942 C20orf203Q8NBC4 194 aa10.31□□□□□ -0.76
HDAC6-218ENST00000470942 NUP35Q8NFH5 326 aa10.31□□□□□ -0.76
HDAC6-218ENST00000470942 TMEM70Q9BUB7 260 aa10.31□□□□□ -0.76
HDAC6-218ENST00000470942 IGLV4-60A0A075B6I1 120 aa10.3□□□□□ -0.76
HDAC6-218ENST00000470942 PMCHP20382 165 aa10.3□□□□□ -0.76
HDAC6-218ENST00000470942 C14orf177Q52M58 125 aa10.3□□□□□ -0.76
HDAC6-218ENST00000470942 NAT8BQ9UHF3 227 aa10.3□□□□□ -0.76
HDAC6-218ENST00000470942 IGLV10-54A0A075B6I4 117 aa10.29□□□□□ -0.76
HDAC6-218ENST00000470942 EPM2AB3EWF7 344 aa10.29□□□□□ -0.76
HDAC6-218ENST00000470942 NCR2O95944 276 aa10.29□□□□□ -0.76
HDAC6-218ENST00000470942 APCSP02743 223 aa10.29□□□□□ -0.76
HDAC6-218ENST00000470942 SMR3BP02814 79 aaPredicted RBP10.29□□□□□ -0.76
HDAC6-218ENST00000470942 AMN1Q8IY45 258 aa10.29□□□□□ -0.76
HDAC6-218ENST00000470942 ST20Q9HBF5 79 aa10.29□□□□□ -0.76
HDAC6-218ENST00000470942 FAM30AQ9NZY2 134 aa10.29□□□□□ -0.76
HDAC6-218ENST00000470942 DNAH8Q96JB1 4490 aa10.28□□□□□ -0.76
HDAC6-218ENST00000470942 USP17L23D6RBM5 183 aa10.28□□□□□ -0.76
HDAC6-218ENST00000470942 I3L3M4 83 aa10.28□□□□□ -0.76
HDAC6-218ENST00000470942 GAS8-AS1O95177 125 aa10.28□□□□□ -0.76
HDAC6-218ENST00000470942 RAB4AP20338 218 aa10.28□□□□□ -0.76
HDAC6-218ENST00000470942 LINC01620Q4KN68 170 aa10.28□□□□□ -0.76
HDAC6-218ENST00000470942 AMMECR1LQ6DCA0 310 aa10.28□□□□□ -0.76
HDAC6-218ENST00000470942 RNF185Q96GF1 192 aa10.28□□□□□ -0.76
HDAC6-218ENST00000470942 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.27□□□□□ -0.77
HDAC6-218ENST00000470942 TRAV8-4A0A0B4J246 113 aa10.27□□□□□ -0.77
HDAC6-218ENST00000470942 TRBV6-5A0A0K0K1A5 114 aa10.27□□□□□ -0.77
HDAC6-218ENST00000470942 IGKV2-29A2NJV5 120 aaPredicted RBP10.27□□□□□ -0.77
HDAC6-218ENST00000470942 RAB14P61106 215 aa10.27□□□□□ -0.77
HDAC6-218ENST00000470942 RNASEKQ6P5S7 137 aaKnown RBP10.27□□□□□ -0.77
HDAC6-218ENST00000470942 MRAP2Q96G30 205 aa10.27□□□□□ -0.77
HDAC6-218ENST00000470942 SMIM27A0A1W2PRY6 76 aa10.26□□□□□ -0.77
HDAC6-218ENST00000470942 KRTAP26-1Q6PEX3 210 aa10.26□□□□□ -0.77
HDAC6-218ENST00000470942 IGKV3OR2-268A0A0C4DH90 116 aa10.25□□□□□ -0.77
HDAC6-218ENST00000470942 SMKR1H3BMG3 65 aa10.25□□□□□ -0.77
HDAC6-218ENST00000470942 RPS10P46783 165 aaKnown RBP10.25□□□□□ -0.77
HDAC6-218ENST00000470942 CAMPP49913 170 aa10.25□□□□□ -0.77
HDAC6-218ENST00000470942 Q5VSD8 79 aa10.25□□□□□ -0.77
HDAC6-218ENST00000470942 H7C423 109 aa10.24□□□□□ -0.77
HDAC6-218ENST00000470942 FGF6P10767 208 aa10.24□□□□□ -0.77
HDAC6-218ENST00000470942 TMEM242Q9NWH2 141 aa10.24□□□□□ -0.77
HDAC6-218ENST00000470942 FAM229AH3BQW9 127 aa10.23□□□□□ -0.77
HDAC6-218ENST00000470942 TSHBP01222 138 aa10.23□□□□□ -0.77
HDAC6-218ENST00000470942 PRSS1P07477 247 aa10.23□□□□□ -0.77
HDAC6-218ENST00000470942 POLR2KP53803 58 aaKnown RBP10.23□□□□□ -0.77
HDAC6-218ENST00000470942 A0A1B0GW15 77 aa10.22□□□□□ -0.77
HDAC6-218ENST00000470942 PPP1R17O96001 155 aa10.22□□□□□ -0.77
HDAC6-218ENST00000470942 FAM104BQ5XKR9 115 aa10.22□□□□□ -0.77
HDAC6-218ENST00000470942 MRPL54Q6P161 138 aaKnown RBP10.22□□□□□ -0.77
HDAC6-218ENST00000470942 Q6ZSA8 131 aa10.22□□□□□ -0.77
HDAC6-218ENST00000470942 TMEM101Q96IK0 257 aa10.22□□□□□ -0.77
HDAC6-218ENST00000470942 BTF3L4Q96K17 158 aa10.22□□□□□ -0.77
HDAC6-218ENST00000470942 FAT1Q14517 4588 aa10.22□□□□□ -0.77
HDAC6-218ENST00000470942 VPS13BQ7Z7G8 4022 aa10.22□□□□□ -0.77
HDAC6-218ENST00000470942 TRBV27A0A0K0K1C4 114 aa10.21□□□□□ -0.77
HDAC6-218ENST00000470942 VCYO14598 125 aa10.21□□□□□ -0.77
HDAC6-218ENST00000470942 MRPL51Q4U2R6 128 aaKnown RBP10.21□□□□□ -0.77
HDAC6-218ENST00000470942 GAGE12HA6NDE8 117 aa10.2□□□□□ -0.78
HDAC6-218ENST00000470942 S100A8P05109 93 aa10.2□□□□□ -0.78
HDAC6-218ENST00000470942 ESDP10768 282 aa10.2□□□□□ -0.78
HDAC6-218ENST00000470942 ZNF25P17030 456 aaPredicted RBP10.2□□□□□ -0.78
HDAC6-218ENST00000470942 FCER1GP30273 86 aa10.2□□□□□ -0.78
HDAC6-218ENST00000470942 DGAT2L7PQ6IED9 249 aa10.2□□□□□ -0.78
HDAC6-218ENST00000470942 NRACQ8N912 160 aa10.2□□□□□ -0.78
HDAC6-218ENST00000470942 CLRN3Q8NCR9 226 aa10.2□□□□□ -0.78
HDAC6-218ENST00000470942 SRRM2Q9UQ35 2752 aaKnown RBP10.19□□□□□ -0.78
HDAC6-218ENST00000470942 hDV102S1A0JD36 115 aa10.19□□□□□ -0.78
HDAC6-218ENST00000470942 PPP1R2P9O14990 202 aa10.19□□□□□ -0.78
HDAC6-218ENST00000470942 INAFM2P0DMQ5 153 aa10.19□□□□□ -0.78
HDAC6-218ENST00000470942 CKS2P33552 79 aa10.19□□□□□ -0.78
HDAC6-218ENST00000470942 SUMO2P61956 95 aaKnown RBP10.19□□□□□ -0.78
HDAC6-218ENST00000470942 HBBP68871 147 aa10.19□□□□□ -0.78
HDAC6-218ENST00000470942 OR5A1Q8NGJ0 315 aa10.19□□□□□ -0.78
HDAC6-218ENST00000470942 C7orf77A4D0Y5 90 aa10.18□□□□□ -0.78
HDAC6-218ENST00000470942 LINC00862A6NCI5 91 aa10.18□□□□□ -0.78
HDAC6-218ENST00000470942 F8W036 122 aa10.18□□□□□ -0.78
HDAC6-218ENST00000470942 CLLU1Q5K131 121 aa10.17□□□□□ -0.78
HDAC6-218ENST00000470942 SCXQ7RTU7 201 aa10.17□□□□□ -0.78
HDAC6-218ENST00000470942 CHCHD10Q8WYQ3 142 aaPredicted RBP10.17□□□□□ -0.78
HDAC6-218ENST00000470942 KIR2DL4Q99706 377 aa10.17□□□□□ -0.78
HDAC6-218ENST00000470942 AP5S1Q9NUS5 200 aa10.17□□□□□ -0.78
HDAC6-218ENST00000470942 A0A1B0GXF2 115 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms