RNA–Protein interactions for RNA: ENST00000468937.2

SYNE1-218, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 688 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-218ENST00000468937 AMTNQ6UX39 209 aa2.6□□□□□ -1.99
SYNE1-218ENST00000468937 LINC00322Q6ZN03 302 aaPredicted RBP2.6□□□□□ -1.99
SYNE1-218ENST00000468937 FAM231DQ6ZW35 169 aa2.6□□□□□ -1.99
SYNE1-218ENST00000468937 PRNTQ86SH4 94 aa2.6□□□□□ -1.99
SYNE1-218ENST00000468937 BAGE2Q86Y30 109 aa2.6□□□□□ -1.99
SYNE1-218ENST00000468937 APRG1Q8IVJ8 170 aa2.6□□□□□ -1.99
SYNE1-218ENST00000468937 ZNF738Q8NE65 137 aa2.6□□□□□ -1.99
SYNE1-218ENST00000468937 OR8A1Q8NGG7 326 aa2.6□□□□□ -1.99
SYNE1-218ENST00000468937 ZC2HC1AQ96GY0 325 aa2.6□□□□□ -1.99
SYNE1-218ENST00000468937 FAM19A4Q96LR4 140 aa2.6□□□□□ -1.99
SYNE1-218ENST00000468937 AGPAT4-IT1Q9H0P7 198 aa2.6□□□□□ -1.99
SYNE1-218ENST00000468937 VCX2Q9H322 139 aa2.6□□□□□ -1.99
SYNE1-218ENST00000468937 RPP21Q9H633 154 aaKnown RBP2.6□□□□□ -1.99
SYNE1-218ENST00000468937 TMEM242Q9NWH2 141 aa2.6□□□□□ -1.99
SYNE1-218ENST00000468937 ZNF492Q9P255 531 aa2.6□□□□□ -1.99
SYNE1-218ENST00000468937 ZFP30Q9Y2G7 519 aa2.6□□□□□ -1.99
SYNE1-218ENST00000468937 LENEPQ9Y5L5 61 aa2.6□□□□□ -1.99
SYNE1-218ENST00000468937 PKHD1P08F94 4074 aa2.59□□□□□ -1.99
SYNE1-218ENST00000468937 OR4C46A6NHA9 309 aa2.59□□□□□ -1.99
SYNE1-218ENST00000468937 H3BMM0 161 aa2.59□□□□□ -1.99
SYNE1-218ENST00000468937 M0R036 132 aa2.59□□□□□ -1.99
SYNE1-218ENST00000468937 CD7P09564 240 aa2.59□□□□□ -1.99
SYNE1-218ENST00000468937 HLA-DRB4P13762 266 aa2.59□□□□□ -1.99
SYNE1-218ENST00000468937 ZNF80P51504 273 aaPredicted RBP2.59□□□□□ -1.99
SYNE1-218ENST00000468937 ZNF138P52744 262 aa2.59□□□□□ -1.99
SYNE1-218ENST00000468937 SNRPD3P62318 126 aaKnown RBP2.59□□□□□ -1.99
SYNE1-218ENST00000468937 PSMG4Q5JS54 123 aa2.59□□□□□ -1.99
SYNE1-218ENST00000468937 SAPCD1Q5SSQ6 148 aa2.59□□□□□ -1.99
SYNE1-218ENST00000468937 IBA57Q5T440 356 aaKnown RBP2.59□□□□□ -1.99
SYNE1-218ENST00000468937 TMEM78Q5T7P6 136 aa2.59□□□□□ -1.99
SYNE1-218ENST00000468937 FOXI2Q6ZQN5 318 aa2.59□□□□□ -1.99
SYNE1-218ENST00000468937 ZFAND2AQ8N6M9 145 aa2.59□□□□□ -1.99
SYNE1-218ENST00000468937 SFRP2Q96HF1 295 aa2.59□□□□□ -1.99
SYNE1-218ENST00000468937 YPEL4Q96NS1 127 aa2.59□□□□□ -1.99
SYNE1-218ENST00000468937 ODF3Q96PU9 254 aa2.59□□□□□ -1.99
SYNE1-218ENST00000468937 RNASE7Q9H1E1 156 aaKnown RBP2.59□□□□□ -1.99
SYNE1-218ENST00000468937 SAV1Q9H4B6 383 aaPredicted RBP2.59□□□□□ -1.99
SYNE1-218ENST00000468937 TUBA4BQ9H853 241 aa2.59□□□□□ -1.99
SYNE1-218ENST00000468937 OSTCQ9NRP0 149 aa2.59□□□□□ -1.99
SYNE1-218ENST00000468937 V9GYV3 84 aa2.59□□□□□ -1.99
SYNE1-218ENST00000468937 HLA-DRB4X5D2U9 266 aa2.59□□□□□ -1.99
SYNE1-218ENST00000468937 PCP4L1A6NKN8 68 aa2.58□□□□□ -2
SYNE1-218ENST00000468937 KNCNA6PVL3 124 aa2.58□□□□□ -2
SYNE1-218ENST00000468937 CRXO43186 299 aaPredicted RBP2.58□□□□□ -2
SYNE1-218ENST00000468937 SH2D1AO60880 128 aa2.58□□□□□ -2
SYNE1-218ENST00000468937 PFN1P07737 140 aaKnown RBP2.58□□□□□ -2
SYNE1-218ENST00000468937 MGST1P10620 155 aaKnown RBP2.58□□□□□ -2
SYNE1-218ENST00000468937 HIST1H1AQ02539 215 aaPredicted RBP2.58□□□□□ -2
SYNE1-218ENST00000468937 ELOBQ15370 118 aa2.58□□□□□ -2
SYNE1-218ENST00000468937 SMUG1Q53HV7 270 aa2.58□□□□□ -2
SYNE1-218ENST00000468937 Q6AWC8 147 aa2.58□□□□□ -2
SYNE1-218ENST00000468937 EBLN2Q6P2I7 272 aa2.58□□□□□ -2
SYNE1-218ENST00000468937 Q6ZQT7 251 aa2.58□□□□□ -2
SYNE1-218ENST00000468937 CBLN2Q8IUK8 224 aa2.58□□□□□ -2
SYNE1-218ENST00000468937 C15orf56Q8N910 161 aa2.58□□□□□ -2
SYNE1-218ENST00000468937 OR10J6PQ8NGY7 276 aa2.58□□□□□ -2
SYNE1-218ENST00000468937 WFDC10AQ9H1F0 79 aa2.58□□□□□ -2
SYNE1-218ENST00000468937 TRBV24-1A0A075B6N3 115 aa2.57□□□□□ -2
SYNE1-218ENST00000468937 SMIM27A0A1W2PRY6 76 aa2.57□□□□□ -2
SYNE1-218ENST00000468937 XKRY2A2RUG3 117 aa2.57□□□□□ -2
SYNE1-218ENST00000468937 FABP5P3A8MUU1 101 aa2.57□□□□□ -2
SYNE1-218ENST00000468937 OR11H12B2RN74 326 aa2.57□□□□□ -2
SYNE1-218ENST00000468937 H7BYZ3 331 aa2.57□□□□□ -2
SYNE1-218ENST00000468937 M0R2Z0 102 aa2.57□□□□□ -2
SYNE1-218ENST00000468937 PPP1R2P9O14990 202 aa2.57□□□□□ -2
SYNE1-218ENST00000468937 GATCO43716 136 aaKnown RBP2.57□□□□□ -2
SYNE1-218ENST00000468937 ATP5LO75964 103 aa2.57□□□□□ -2
SYNE1-218ENST00000468937 MT-ND4LP03901 98 aa2.57□□□□□ -2
SYNE1-218ENST00000468937 GPX1P07203 203 aa2.57□□□□□ -2
SYNE1-218ENST00000468937 CXCL1P09341 107 aa2.57□□□□□ -2
SYNE1-218ENST00000468937 RPL13AP40429 203 aaKnown RBP2.57□□□□□ -2
SYNE1-218ENST00000468937 CDKN1BP46527 198 aa2.57□□□□□ -2
SYNE1-218ENST00000468937 CMC4P56277 68 aaPredicted RBP2.57□□□□□ -2
SYNE1-218ENST00000468937 RPL19P84098 196 aaKnown RBP2.57□□□□□ -2
SYNE1-218ENST00000468937 BTN1A1Q13410 526 aa2.57□□□□□ -2
SYNE1-218ENST00000468937 RBMY1FQ15415 496 aaKnown RBP2.57□□□□□ -2
SYNE1-218ENST00000468937 SPINK13Q1W4C9 94 aa2.57□□□□□ -2
SYNE1-218ENST00000468937 ACTL10Q5JWF8 245 aa2.57□□□□□ -2
SYNE1-218ENST00000468937 DNLZQ5SXM8 178 aa2.57□□□□□ -2
SYNE1-218ENST00000468937 FAM162BQ5T6X4 162 aa2.57□□□□□ -2
SYNE1-218ENST00000468937 OR4B1Q8NGF8 309 aa2.57□□□□□ -2
SYNE1-218ENST00000468937 IMMP2LQ96T52 175 aa2.57□□□□□ -2
SYNE1-218ENST00000468937 BIN3Q9NQY0 253 aa2.57□□□□□ -2
SYNE1-218ENST00000468937 SMCO4Q9NRQ5 59 aa2.57□□□□□ -2
SYNE1-218ENST00000468937 IL36BQ9NZH7 164 aa2.57□□□□□ -2
SYNE1-218ENST00000468937 DNAH10Q8IVF4 4471 aa2.57□□□□□ -2
SYNE1-218ENST00000468937 TRAV12-2A0A075B6T6 113 aa2.56□□□□□ -2
SYNE1-218ENST00000468937 TRAV9-1A0A075B6T8 112 aa2.56□□□□□ -2
SYNE1-218ENST00000468937 TGIF2-C20orf24A0A0A6YYL0 155 aa2.56□□□□□ -2
SYNE1-218ENST00000468937 TRAV21A0A0B4J279 112 aa2.56□□□□□ -2
SYNE1-218ENST00000468937 C7orf71A4D174 169 aa2.56□□□□□ -2
SYNE1-218ENST00000468937 TMEM189A5PLL7 270 aa2.56□□□□□ -2
SYNE1-218ENST00000468937 HIGD1CA8MV81 97 aa2.56□□□□□ -2
SYNE1-218ENST00000468937 A8MWL6 223 aa2.56□□□□□ -2
SYNE1-218ENST00000468937 P01737 135 aa2.56□□□□□ -2
SYNE1-218ENST00000468937 IGLC6P0CF74 106 aa2.56□□□□□ -2
SYNE1-218ENST00000468937 GZMBP10144 247 aa2.56□□□□□ -2
SYNE1-218ENST00000468937 TSPOP30536 169 aa2.56□□□□□ -2
SYNE1-218ENST00000468937 FOXA3P55318 350 aaPredicted RBP2.56□□□□□ -2
SYNE1-218ENST00000468937 CACNG7P62955 275 aa2.56□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms