RNA–Protein interactions for RNA: ENST00000465238.5

COL7A1-205, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-205ENST00000465238 ST20Q9HBF5 79 aa11.95□□□□□ -0.5
COL7A1-205ENST00000465238 RPS10P5Q9NQ39 176 aa11.95□□□□□ -0.5
COL7A1-205ENST00000465238 TMEM242Q9NWH2 141 aa11.95□□□□□ -0.5
COL7A1-205ENST00000465238 A0A087WX48 190 aa11.94□□□□□ -0.5
COL7A1-205ENST00000465238 IGHV1-24A0A0C4DH33 117 aa11.94□□□□□ -0.5
COL7A1-205ENST00000465238 TRBV6-5A0A0K0K1A5 114 aa11.94□□□□□ -0.5
COL7A1-205ENST00000465238 SDHAF1A6NFY7 115 aa11.94□□□□□ -0.5
COL7A1-205ENST00000465238 TMEM262E9PQX1 116 aa11.94□□□□□ -0.5
COL7A1-205ENST00000465238 SMKR1H3BMG3 65 aa11.94□□□□□ -0.5
COL7A1-205ENST00000465238 EREGO14944 169 aa11.94□□□□□ -0.5
COL7A1-205ENST00000465238 GAS8-AS1O95177 125 aa11.94□□□□□ -0.5
COL7A1-205ENST00000465238 NCR2O95944 276 aa11.94□□□□□ -0.5
COL7A1-205ENST00000465238 S100PP25815 95 aa11.94□□□□□ -0.5
COL7A1-205ENST00000465238 COTL1Q14019 142 aa11.94□□□□□ -0.5
COL7A1-205ENST00000465238 NFE4Q86UQ8 179 aa11.94□□□□□ -0.5
COL7A1-205ENST00000465238 PGPEP1Q9NXJ5 209 aa11.94□□□□□ -0.5
COL7A1-205ENST00000465238 CKS2P33552 79 aa11.93□□□□□ -0.5
COL7A1-205ENST00000465238 PKIAP61925 76 aa11.93□□□□□ -0.5
COL7A1-205ENST00000465238 IQCJQ1A5X6 159 aa11.93□□□□□ -0.5
COL7A1-205ENST00000465238 SVBPQ8N300 66 aa11.93□□□□□ -0.5
COL7A1-205ENST00000465238 TRAV9-1A0A075B6T8 112 aa11.92□□□□□ -0.5
COL7A1-205ENST00000465238 IBA57-AS1B1ANH7 110 aa11.92□□□□□ -0.5
COL7A1-205ENST00000465238 PMCHP20382 165 aa11.92□□□□□ -0.5
COL7A1-205ENST00000465238 RPS10P46783 165 aaKnown RBP11.92□□□□□ -0.5
COL7A1-205ENST00000465238 DEFB104AQ8WTQ1 72 aa11.92□□□□□ -0.5
COL7A1-205ENST00000465238 CHCHD7Q9BUK0 85 aa11.92□□□□□ -0.5
COL7A1-205ENST00000465238 I3L3M4 83 aa11.91□□□□□ -0.5
COL7A1-205ENST00000465238 SNAPINO95295 136 aa11.91□□□□□ -0.5
COL7A1-205ENST00000465238 AMTP48728 403 aa11.91□□□□□ -0.5
COL7A1-205ENST00000465238 Q8N3U1 123 aa11.91□□□□□ -0.5
COL7A1-205ENST00000465238 TMEM243Q9BU79 118 aa11.91□□□□□ -0.5
COL7A1-205ENST00000465238 PPBPP02775 128 aa11.9□□□□□ -0.5
COL7A1-205ENST00000465238 GAGE6Q13070 117 aa11.9□□□□□ -0.5
COL7A1-205ENST00000465238 ELOBQ15370 118 aa11.9□□□□□ -0.5
COL7A1-205ENST00000465238 CDPF1Q6NVV7 123 aa11.9□□□□□ -0.5
COL7A1-205ENST00000465238 SLC7A5P1Q8MH63 180 aa11.9□□□□□ -0.5
COL7A1-205ENST00000465238 NRACQ8N912 160 aa11.9□□□□□ -0.5
COL7A1-205ENST00000465238 TMEM70Q9BUB7 260 aa11.9□□□□□ -0.5
COL7A1-205ENST00000465238 D6R8Y8 96 aa11.89□□□□□ -0.51
COL7A1-205ENST00000465238 POLR2KP53803 58 aaKnown RBP11.89□□□□□ -0.51
COL7A1-205ENST00000465238 VCYO14598 125 aa11.88□□□□□ -0.51
COL7A1-205ENST00000465238 UBE2L6O14933 153 aa11.88□□□□□ -0.51
COL7A1-205ENST00000465238 APCSP02743 223 aa11.88□□□□□ -0.51
COL7A1-205ENST00000465238 SUMO2P61956 95 aaKnown RBP11.88□□□□□ -0.51
COL7A1-205ENST00000465238 LAGE3Q14657 143 aa11.88□□□□□ -0.51
COL7A1-205ENST00000465238 ATRAIDQ6UW56 229 aa11.88□□□□□ -0.51
COL7A1-205ENST00000465238 Q9HAA7 133 aa11.88□□□□□ -0.51
COL7A1-205ENST00000465238 KLK12Q9UKR0 248 aa11.88□□□□□ -0.51
COL7A1-205ENST00000465238 TNFRSF6BO95407 300 aa11.87□□□□□ -0.51
COL7A1-205ENST00000465238 MPV17L2Q567V2 206 aa11.87□□□□□ -0.51
COL7A1-205ENST00000465238 TMEM136Q6ZRR5 245 aa11.87□□□□□ -0.51
COL7A1-205ENST00000465238 ORMDL3Q8N138 153 aa11.87□□□□□ -0.51
COL7A1-205ENST00000465238 C20orf78Q9BR46 151 aa11.87□□□□□ -0.51
COL7A1-205ENST00000465238 TRBV24-1A0A075B6N3 115 aa11.86□□□□□ -0.51
COL7A1-205ENST00000465238 A0A087WTM6 91 aa11.86□□□□□ -0.51
COL7A1-205ENST00000465238 TRAV8-3A0A0A6YYJ7 113 aa11.86□□□□□ -0.51
COL7A1-205ENST00000465238 TRBV27A0A0K0K1C4 114 aa11.86□□□□□ -0.51
COL7A1-205ENST00000465238 PRELID3AQ96N28 172 aa11.86□□□□□ -0.51
COL7A1-205ENST00000465238 PHOX2AO14813 284 aa11.85□□□□□ -0.51
COL7A1-205ENST00000465238 ANGP03950 147 aaKnown RBP11.85□□□□□ -0.51
COL7A1-205ENST00000465238 FCER1GP30273 86 aa11.85□□□□□ -0.51
COL7A1-205ENST00000465238 RBX1P62877 108 aa11.85□□□□□ -0.51
COL7A1-205ENST00000465238 Q8N976 141 aa11.85□□□□□ -0.51
COL7A1-205ENST00000465238 KIR2DL4Q99706 377 aa11.85□□□□□ -0.51
COL7A1-205ENST00000465238 TSHBP01222 138 aa11.84□□□□□ -0.51
COL7A1-205ENST00000465238 NPYP01303 97 aa11.84□□□□□ -0.51
COL7A1-205ENST00000465238 COX19Q49B96 90 aa11.84□□□□□ -0.51
COL7A1-205ENST00000465238 UBE2WQ96B02 151 aa11.84□□□□□ -0.51
COL7A1-205ENST00000465238 EPM2AB3EWF7 344 aa11.83□□□□□ -0.52
COL7A1-205ENST00000465238 H7C423 109 aa11.83□□□□□ -0.52
COL7A1-205ENST00000465238 PSCAO43653 123 aa11.83□□□□□ -0.52
COL7A1-205ENST00000465238 FUSP35637 526 aaKnown RBP eCLIP11.83□□□□□ -0.52
COL7A1-205ENST00000465238 RPL32P62910 135 aaKnown RBP11.83□□□□□ -0.52
COL7A1-205ENST00000465238 AMMECR1LQ6DCA0 310 aa11.83□□□□□ -0.52
COL7A1-205ENST00000465238 TM2D2Q9BX73 214 aa11.83□□□□□ -0.52
COL7A1-205ENST00000465238 A0A1B0GUV1 79 aa11.82□□□□□ -0.52
COL7A1-205ENST00000465238 HLA-DQA1P01909 254 aa11.82□□□□□ -0.52
COL7A1-205ENST00000465238 CRPP02741 224 aa11.82□□□□□ -0.52
COL7A1-205ENST00000465238 Q0VG73 95 aa11.82□□□□□ -0.52
COL7A1-205ENST00000465238 RMI2Q96E14 147 aa11.82□□□□□ -0.52
COL7A1-205ENST00000465238 GNB1LQ9BYB4 327 aa11.82□□□□□ -0.52
COL7A1-205ENST00000465238 LAMTOR2Q9Y2Q5 125 aa11.82□□□□□ -0.52
COL7A1-205ENST00000465238 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.81□□□□□ -0.52
COL7A1-205ENST00000465238 IGKV2-29A2NJV5 120 aaPredicted RBP11.81□□□□□ -0.52
COL7A1-205ENST00000465238 XGP55808 180 aa11.81□□□□□ -0.52
COL7A1-205ENST00000465238 SMIM2Q9BVW6 85 aa11.81□□□□□ -0.52
COL7A1-205ENST00000465238 TCAPO15273 167 aa11.8□□□□□ -0.52
COL7A1-205ENST00000465238 ESDP10768 282 aa11.8□□□□□ -0.52
COL7A1-205ENST00000465238 COX11Q9Y6N1 276 aa11.8□□□□□ -0.52
COL7A1-205ENST00000465238 IGKV2D-24A0A075B6R9 120 aa11.79□□□□□ -0.52
COL7A1-205ENST00000465238 FGF6P10767 208 aa11.79□□□□□ -0.52
COL7A1-205ENST00000465238 RNASEKQ6P5S7 137 aaKnown RBP11.79□□□□□ -0.52
COL7A1-205ENST00000465238 ENHOQ6UWT2 76 aa11.79□□□□□ -0.52
COL7A1-205ENST00000465238 LINC00269Q8N2A0 174 aa11.79□□□□□ -0.52
COL7A1-205ENST00000465238 MAP1LC3AQ9H492 121 aa11.79□□□□□ -0.52
COL7A1-205ENST00000465238 IGLV4-60A0A075B6I1 120 aa11.78□□□□□ -0.52
COL7A1-205ENST00000465238 TGIF2-C20orf24A0A0A6YYL0 155 aa11.78□□□□□ -0.52
COL7A1-205ENST00000465238 MT-ND6P03923 174 aa11.78□□□□□ -0.52
COL7A1-205ENST00000465238 KRTAP10-1P60331 282 aa11.78□□□□□ -0.52
COL7A1-205ENST00000465238 KIAA1644Q3SXP7 199 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 114.4 ms