RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 NAT8BQ9UHF3 227 aa12.39□□□□□ -0.43
USP39-209ENST00000458268 FAM231BA6NCW3 169 aa12.38□□□□□ -0.43
USP39-209ENST00000458268 AMN1Q8IY45 258 aa12.38□□□□□ -0.43
USP39-209ENST00000458268 SDHAF1A6NFY7 115 aa12.37□□□□□ -0.43
USP39-209ENST00000458268 SMKR1H3BMG3 65 aa12.37□□□□□ -0.43
USP39-209ENST00000458268 GAS8-AS1O95177 125 aa12.37□□□□□ -0.43
USP39-209ENST00000458268 NCR2O95944 276 aa12.37□□□□□ -0.43
USP39-209ENST00000458268 CAMPP49913 170 aa12.37□□□□□ -0.43
USP39-209ENST00000458268 TMEM191AQ9H0A3 160 aa12.37□□□□□ -0.43
USP39-209ENST00000458268 IGLV10-54A0A075B6I4 117 aa12.36□□□□□ -0.43
USP39-209ENST00000458268 APCSP02743 223 aa12.36□□□□□ -0.43
USP39-209ENST00000458268 PMCHP20382 165 aa12.36□□□□□ -0.43
USP39-209ENST00000458268 NTN5Q8WTR8 489 aaPredicted RBP12.36□□□□□ -0.43
USP39-209ENST00000458268 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.35□□□□□ -0.43
USP39-209ENST00000458268 IGKV3OR2-268A0A0C4DH90 116 aa12.35□□□□□ -0.43
USP39-209ENST00000458268 IGKV2-29A2NJV5 120 aaPredicted RBP12.35□□□□□ -0.43
USP39-209ENST00000458268 HAMPP81172 84 aa12.35□□□□□ -0.43
USP39-209ENST00000458268 MRPL54Q6P161 138 aaKnown RBP12.35□□□□□ -0.43
USP39-209ENST00000458268 FRZBQ92765 325 aa12.35□□□□□ -0.43
USP39-209ENST00000458268 ST20Q9HBF5 79 aa12.35□□□□□ -0.43
USP39-209ENST00000458268 IGLV4-60A0A075B6I1 120 aa12.34□□□□□ -0.43
USP39-209ENST00000458268 RAB4AP20338 218 aa12.34□□□□□ -0.43
USP39-209ENST00000458268 REG3AQ06141 175 aa12.34□□□□□ -0.43
USP39-209ENST00000458268 MIAQ16674 131 aa12.34□□□□□ -0.43
USP39-209ENST00000458268 AMMECR1LQ6DCA0 310 aa12.34□□□□□ -0.43
USP39-209ENST00000458268 RNF185Q96GF1 192 aa12.34□□□□□ -0.43
USP39-209ENST00000458268 LRP1BQ9NZR2 4599 aa12.33□□□□□ -0.43
USP39-209ENST00000458268 RPS10P46783 165 aaKnown RBP12.33□□□□□ -0.44
USP39-209ENST00000458268 RNASEKQ6P5S7 137 aaKnown RBP12.33□□□□□ -0.44
USP39-209ENST00000458268 TMEM242Q9NWH2 141 aa12.33□□□□□ -0.44
USP39-209ENST00000458268 DNAH5Q8TE73 4624 aa12.33□□□□□ -0.44
USP39-209ENST00000458268 SMIM27A0A1W2PRY6 76 aa12.32□□□□□ -0.44
USP39-209ENST00000458268 LINC01620Q4KN68 170 aa12.32□□□□□ -0.44
USP39-209ENST00000458268 C20orf203Q8NBC4 194 aa12.32□□□□□ -0.44
USP39-209ENST00000458268 MRAP2Q96G30 205 aa12.32□□□□□ -0.44
USP39-209ENST00000458268 RYR1P21817 5038 aa12.31□□□□□ -0.44
USP39-209ENST00000458268 I3L3M4 83 aa12.31□□□□□ -0.44
USP39-209ENST00000458268 CLLU1Q5K131 121 aa12.3□□□□□ -0.44
USP39-209ENST00000458268 USP17L23D6RBM5 183 aa12.29□□□□□ -0.44
USP39-209ENST00000458268 MRPL51Q4U2R6 128 aaKnown RBP12.29□□□□□ -0.44
USP39-209ENST00000458268 TMEM70Q9BUB7 260 aa12.29□□□□□ -0.44
USP39-209ENST00000458268 KRTAP17-1Q9BYP8 105 aa12.29□□□□□ -0.44
USP39-209ENST00000458268 KRTAP4-5Q9BYR2 181 aa12.29□□□□□ -0.44
USP39-209ENST00000458268 PRR34Q9NV39 138 aa12.29□□□□□ -0.44
USP39-209ENST00000458268 TRBV6-5A0A0K0K1A5 114 aa12.28□□□□□ -0.44
USP39-209ENST00000458268 A0A1B0GUV1 79 aa12.27□□□□□ -0.45
USP39-209ENST00000458268 TSHBP01222 138 aa12.27□□□□□ -0.45
USP39-209ENST00000458268 FGF6P10767 208 aa12.27□□□□□ -0.45
USP39-209ENST00000458268 FCER1GP30273 86 aa12.27□□□□□ -0.45
USP39-209ENST00000458268 HBBP68871 147 aa12.27□□□□□ -0.45
USP39-209ENST00000458268 IFITM2Q01629 132 aa12.27□□□□□ -0.45
USP39-209ENST00000458268 FAM104BQ5XKR9 115 aa12.27□□□□□ -0.45
USP39-209ENST00000458268 PPP1R2P9O14990 202 aa12.26□□□□□ -0.45
USP39-209ENST00000458268 SMR3BP02814 79 aaPredicted RBP12.26□□□□□ -0.45
USP39-209ENST00000458268 CKS2P33552 79 aa12.26□□□□□ -0.45
USP39-209ENST00000458268 XGP55808 180 aa12.26□□□□□ -0.45
USP39-209ENST00000458268 C14orf177Q52M58 125 aa12.26□□□□□ -0.45
USP39-209ENST00000458268 BTF3L4Q96K17 158 aa12.26□□□□□ -0.45
USP39-209ENST00000458268 A0A1B0GW15 77 aa12.25□□□□□ -0.45
USP39-209ENST00000458268 S100A8P05109 93 aa12.25□□□□□ -0.45
USP39-209ENST00000458268 Q8N1X5 172 aa12.25□□□□□ -0.45
USP39-209ENST00000458268 TMEM101Q96IK0 257 aa12.25□□□□□ -0.45
USP39-209ENST00000458268 MT-ND4LP03901 98 aa12.24□□□□□ -0.45
USP39-209ENST00000458268 POLR2KP53803 58 aaKnown RBP12.24□□□□□ -0.45
USP39-209ENST00000458268 PNRC1Q12796 327 aaPredicted RBP12.24□□□□□ -0.45
USP39-209ENST00000458268 NRACQ8N912 160 aa12.24□□□□□ -0.45
USP39-209ENST00000458268 HSPG2P98160 4391 aa12.24□□□□□ -0.45
USP39-209ENST00000458268 TRAV8-4A0A0B4J246 113 aa12.23□□□□□ -0.45
USP39-209ENST00000458268 F8W036 122 aa12.23□□□□□ -0.45
USP39-209ENST00000458268 VCYO14598 125 aa12.23□□□□□ -0.45
USP39-209ENST00000458268 PPP1R17O96001 155 aa12.23□□□□□ -0.45
USP39-209ENST00000458268 SUMO2P61956 95 aaKnown RBP12.23□□□□□ -0.45
USP39-209ENST00000458268 FAM30AQ9NZY2 134 aa12.23□□□□□ -0.45
USP39-209ENST00000458268 APOBP04114 4563 aaKnown RBP12.23□□□□□ -0.45
USP39-209ENST00000458268 C7orf77A4D0Y5 90 aa12.22□□□□□ -0.45
USP39-209ENST00000458268 GAGE12HA6NDE8 117 aa12.22□□□□□ -0.45
USP39-209ENST00000458268 D6R8Y8 96 aa12.22□□□□□ -0.45
USP39-209ENST00000458268 OR5A1Q8NGJ0 315 aa12.22□□□□□ -0.45
USP39-209ENST00000458268 KIR2DL4Q99706 377 aa12.22□□□□□ -0.45
USP39-209ENST00000458268 TRBV27A0A0K0K1C4 114 aa12.21□□□□□ -0.45
USP39-209ENST00000458268 A0A1B0GXF2 115 aa12.21□□□□□ -0.45
USP39-209ENST00000458268 H7C423 109 aa12.21□□□□□ -0.45
USP39-209ENST00000458268 PRSS1P07477 247 aa12.21□□□□□ -0.45
USP39-209ENST00000458268 DGAT2L7PQ6IED9 249 aa12.21□□□□□ -0.45
USP39-209ENST00000458268 KRTAP26-1Q6PEX3 210 aa12.21□□□□□ -0.45
USP39-209ENST00000458268 ANAPC16Q96DE5 110 aa12.21□□□□□ -0.45
USP39-209ENST00000458268 hDV102S1A0JD36 115 aa12.2□□□□□ -0.46
USP39-209ENST00000458268 EPM2AB3EWF7 344 aa12.2□□□□□ -0.46
USP39-209ENST00000458268 TNFRSF6BO95407 300 aa12.2□□□□□ -0.46
USP39-209ENST00000458268 ESDP10768 282 aa12.2□□□□□ -0.46
USP39-209ENST00000458268 COMMD7Q86VX2 200 aa12.2□□□□□ -0.46
USP39-209ENST00000458268 LINC00862A6NCI5 91 aa12.19□□□□□ -0.46
USP39-209ENST00000458268 ZNF25P17030 456 aaPredicted RBP12.19□□□□□ -0.46
USP39-209ENST00000458268 CHCHD10Q8WYQ3 142 aaPredicted RBP12.19□□□□□ -0.46
USP39-209ENST00000458268 NPYP01303 97 aa12.18□□□□□ -0.46
USP39-209ENST00000458268 ADCYAP1P18509 176 aa12.18□□□□□ -0.46
USP39-209ENST00000458268 UQCC3Q6UW78 93 aa12.18□□□□□ -0.46
USP39-209ENST00000458268 ATP5L2Q7Z4Y8 100 aa12.18□□□□□ -0.46
USP39-209ENST00000458268 XCL1P47992 114 aa12.17□□□□□ -0.46
USP39-209ENST00000458268 RNASE13Q5GAN3 156 aaKnown RBP12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms