RNA–Protein interactions for RNA: ENST00000456560.6

SEMA3B-209, Transcript of semaphorin 3B, humanhuman

TSL 1 (best) BASIC

Gene SEMA3B, Length 2,221 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3B-209ENST00000456560 TSPAN13O95857 204 aa13.42□□□□□ -0.26
SEMA3B-209ENST00000456560 HTN1P15515 57 aa13.42□□□□□ -0.26
SEMA3B-209ENST00000456560 PIK3CD-AS1Q5SR53 167 aa13.42□□□□□ -0.26
SEMA3B-209ENST00000456560 TEX29Q8N6K0 151 aa13.42□□□□□ -0.26
SEMA3B-209ENST00000456560 PTH2Q96A98 100 aa13.42□□□□□ -0.26
SEMA3B-209ENST00000456560 LINC00467Q9BRT7 94 aa13.42□□□□□ -0.26
SEMA3B-209ENST00000456560 C1QTNF4Q9BXJ3 329 aa13.42□□□□□ -0.26
SEMA3B-209ENST00000456560 PRM2P04554 102 aa13.41□□□□□ -0.26
SEMA3B-209ENST00000456560 FOXI1Q12951 378 aa13.41□□□□□ -0.26
SEMA3B-209ENST00000456560 A0A1B0GV72 72 aa13.41□□□□□ -0.26
SEMA3B-209ENST00000456560 DNAJC9-AS1A6NH13 148 aa13.41□□□□□ -0.26
SEMA3B-209ENST00000456560 M0R2P5 195 aa13.41□□□□□ -0.26
SEMA3B-209ENST00000456560 SMCPP49901 116 aaPredicted RBP13.41□□□□□ -0.26
SEMA3B-209ENST00000456560 HERVK_113P61574 105 aa13.41□□□□□ -0.26
SEMA3B-209ENST00000456560 OPRPNQ99935 248 aaPredicted RBP13.41□□□□□ -0.26
SEMA3B-209ENST00000456560 SONP18583 2426 aaKnown RBP13.4□□□□□ -0.26
SEMA3B-209ENST00000456560 NFE4Q86UQ8 179 aa13.4□□□□□ -0.26
SEMA3B-209ENST00000456560 PROK1P58294 105 aa13.4□□□□□ -0.26
SEMA3B-209ENST00000456560 ATP6V0E2Q8NHE4 81 aa13.4□□□□□ -0.26
SEMA3B-209ENST00000456560 RAX2Q96IS3 184 aa13.4□□□□□ -0.26
SEMA3B-209ENST00000456560 OTOGQ6ZRI0 2925 aa13.39□□□□□ -0.27
SEMA3B-209ENST00000456560 IGHV3-73A0A0B4J1V6 119 aa13.39□□□□□ -0.27
SEMA3B-209ENST00000456560 A8MWV9 139 aa13.39□□□□□ -0.27
SEMA3B-209ENST00000456560 ZNF415Q09FC8 603 aa13.39□□□□□ -0.27
SEMA3B-209ENST00000456560 C11orf72Q8NBR9 251 aa13.39□□□□□ -0.27
SEMA3B-209ENST00000456560 ZNF418Q8TF45 676 aaPredicted RBP13.39□□□□□ -0.27
SEMA3B-209ENST00000456560 A0A0J9YY99 117 aa13.38□□□□□ -0.27
SEMA3B-209ENST00000456560 TMEM170BQ5T4T1 132 aa13.38□□□□□ -0.27
SEMA3B-209ENST00000456560 CLUHP3Q96NS8 147 aa13.38□□□□□ -0.27
SEMA3B-209ENST00000456560 TSPEAR-AS2P59090 65 aa13.37□□□□□ -0.27
SEMA3B-209ENST00000456560 UBE2D3P61077 147 aa13.37□□□□□ -0.27
SEMA3B-209ENST00000456560 UBE2D2P62837 147 aa13.37□□□□□ -0.27
SEMA3B-209ENST00000456560 FHL3Q13643 280 aa13.37□□□□□ -0.27
SEMA3B-209ENST00000456560 LYRM7Q5U5X0 104 aa13.37□□□□□ -0.27
SEMA3B-209ENST00000456560 NDUFA11Q86Y39 141 aa13.37□□□□□ -0.27
SEMA3B-209ENST00000456560 ESM1Q9NQ30 184 aa13.37□□□□□ -0.27
SEMA3B-209ENST00000456560 IGLV4-3A0A075B6K6 122 aa13.36□□□□□ -0.27
SEMA3B-209ENST00000456560 TRAV25A0A0B4J276 109 aa13.36□□□□□ -0.27
SEMA3B-209ENST00000456560 Q6ZSN1 163 aa13.36□□□□□ -0.27
SEMA3B-209ENST00000456560 LINC01587Q99440 93 aa13.36□□□□□ -0.27
SEMA3B-209ENST00000456560 NACAE9PAV3 2078 aa13.36□□□□□ -0.27
SEMA3B-209ENST00000456560 BAHCC1Q9P281 2608 aa13.35□□□□□ -0.27
SEMA3B-209ENST00000456560 INSP01308 110 aa13.35□□□□□ -0.27
SEMA3B-209ENST00000456560 ODF3L2Q3SX64 289 aa13.35□□□□□ -0.27
SEMA3B-209ENST00000456560 FAM104AQ969W3 186 aa13.35□□□□□ -0.27
SEMA3B-209ENST00000456560 AMELXQ99217 191 aa13.35□□□□□ -0.27
SEMA3B-209ENST00000456560 SPXQ9BT56 116 aa13.35□□□□□ -0.27
SEMA3B-209ENST00000456560 PYGO1Q9Y3Y4 419 aa13.35□□□□□ -0.27
SEMA3B-209ENST00000456560 CKS1BP61024 79 aa13.35□□□□□ -0.27
SEMA3B-209ENST00000456560 BEAN1Q3B7T3 259 aa13.35□□□□□ -0.27
SEMA3B-209ENST00000456560 TMEM223A0PJW6 202 aa13.34□□□□□ -0.27
SEMA3B-209ENST00000456560 CD28P10747 220 aa13.34□□□□□ -0.27
SEMA3B-209ENST00000456560 TNFRSF18Q9Y5U5 241 aa13.34□□□□□ -0.27
SEMA3B-209ENST00000456560 SMR3AQ99954 134 aa13.33□□□□□ -0.27
SEMA3B-209ENST00000456560 CDIP1Q9H305 208 aa13.33□□□□□ -0.27
SEMA3B-209ENST00000456560 VCX2Q9H322 139 aa13.33□□□□□ -0.27
SEMA3B-209ENST00000456560 Q9UF83 564 aa13.33□□□□□ -0.27
SEMA3B-209ENST00000456560 J3QQQ9 107 aa13.33□□□□□ -0.28
SEMA3B-209ENST00000456560 TCL1BO95988 128 aa13.33□□□□□ -0.28
SEMA3B-209ENST00000456560 IGHV3-30P01768 117 aa13.33□□□□□ -0.28
SEMA3B-209ENST00000456560 IGHV3-30-5P0DP03 117 aa13.33□□□□□ -0.28
SEMA3B-209ENST00000456560 CCL24O00175 119 aa13.32□□□□□ -0.28
SEMA3B-209ENST00000456560 CFC1BP0CG36 223 aa13.32□□□□□ -0.28
SEMA3B-209ENST00000456560 CFC1P0CG37 223 aa13.32□□□□□ -0.28
SEMA3B-209ENST00000456560 KRTAP1-1Q07627 177 aa13.32□□□□□ -0.28
SEMA3B-209ENST00000456560 C11orf44Q8N8P7 122 aa13.32□□□□□ -0.28
SEMA3B-209ENST00000456560 SLC25A29Q8N8R3 303 aa13.32□□□□□ -0.28
SEMA3B-209ENST00000456560 A0A1W2PRX2 142 aa13.32□□□□□ -0.28
SEMA3B-209ENST00000456560 RHODO00212 210 aa13.32□□□□□ -0.28
SEMA3B-209ENST00000456560 LEPROTO15243 131 aa13.32□□□□□ -0.28
SEMA3B-209ENST00000456560 RS1O15537 224 aa13.32□□□□□ -0.28
SEMA3B-209ENST00000456560 ZNF22P17026 224 aaPredicted RBP13.32□□□□□ -0.28
SEMA3B-209ENST00000456560 A0A0J9YXV3 536 aa13.31□□□□□ -0.28
SEMA3B-209ENST00000456560 PPDPFLQ8WWR9 84 aa13.31□□□□□ -0.28
SEMA3B-209ENST00000456560 SETXQ7Z333 2677 aaKnown RBP13.31□□□□□ -0.28
SEMA3B-209ENST00000456560 CUBNO60494 3623 aa13.31□□□□□ -0.28
SEMA3B-209ENST00000456560 TRBV20-1A0A075B6N2 111 aa13.31□□□□□ -0.28
SEMA3B-209ENST00000456560 IGHV3-53P01767 116 aa13.31□□□□□ -0.28
SEMA3B-209ENST00000456560 CRYBA4P53673 196 aa13.31□□□□□ -0.28
SEMA3B-209ENST00000456560 LGALS3P17931 250 aaKnown RBP13.3□□□□□ -0.28
SEMA3B-209ENST00000456560 TEN1Q86WV5 123 aa13.3□□□□□ -0.28
SEMA3B-209ENST00000456560 C10orf126Q8N4M7 172 aa13.3□□□□□ -0.28
SEMA3B-209ENST00000456560 CARD19Q96LW7 228 aa13.3□□□□□ -0.28
SEMA3B-209ENST00000456560 CHCHD7Q9BUK0 85 aa13.3□□□□□ -0.28
SEMA3B-209ENST00000456560 ANK3Q12955 4377 aaKnown RBP13.3□□□□□ -0.28
SEMA3B-209ENST00000456560 SPINK8P0C7L1 97 aa13.29□□□□□ -0.28
SEMA3B-209ENST00000456560 SCGB1C2P0DMR2 95 aa13.29□□□□□ -0.28
SEMA3B-209ENST00000456560 C1orf158Q8N1D5 194 aa13.29□□□□□ -0.28
SEMA3B-209ENST00000456560 DNAJC30Q96LL9 226 aa13.29□□□□□ -0.28
SEMA3B-209ENST00000456560 XCL2Q9UBD3 114 aa13.29□□□□□ -0.28
SEMA3B-209ENST00000456560 PRO1854Q9UHT4 67 aa13.29□□□□□ -0.28
SEMA3B-209ENST00000456560 CITED2Q99967 270 aaPredicted RBP13.28□□□□□ -0.28
SEMA3B-209ENST00000456560 YAE1D1Q9NRH1 226 aa13.28□□□□□ -0.28
SEMA3B-209ENST00000456560 MT-ATP8P03928 68 aa13.28□□□□□ -0.28
SEMA3B-209ENST00000456560 STHQ8IWL8 128 aa13.28□□□□□ -0.28
SEMA3B-209ENST00000456560 IL17DQ8TAD2 202 aa13.28□□□□□ -0.28
SEMA3B-209ENST00000456560 C16orf95Q9H693 158 aa13.28□□□□□ -0.28
SEMA3B-209ENST00000456560 MTORP42345 2549 aa13.27□□□□□ -0.28
SEMA3B-209ENST00000456560 MRPS36P82909 103 aaKnown RBP13.27□□□□□ -0.29
SEMA3B-209ENST00000456560 CEMP1Q6PRD7 247 aaPredicted RBP13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms