RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 Q8N2B8 174 aa6.97□□□□□ -1.29
CUX1-206ENST00000437600 TOMM6Q96B49 74 aa6.97□□□□□ -1.29
CUX1-206ENST00000437600 TMEM89A2RUT3 159 aa6.96□□□□□ -1.29
CUX1-206ENST00000437600 CRYGDP07320 174 aa6.96□□□□□ -1.29
CUX1-206ENST00000437600 ORMDL2Q53FV1 153 aa6.96□□□□□ -1.29
CUX1-206ENST00000437600 ZFP2Q6ZN57 461 aa6.96□□□□□ -1.29
CUX1-206ENST00000437600 NEXN-AS1Q8NBZ9 246 aa6.96□□□□□ -1.29
CUX1-206ENST00000437600 ANAPC13Q9BS18 74 aa6.96□□□□□ -1.29
CUX1-206ENST00000437600 IGHV1OR15-1A0A075B7D0 117 aa6.96□□□□□ -1.3
CUX1-206ENST00000437600 F8VRH5 84 aa6.96□□□□□ -1.3
CUX1-206ENST00000437600 F8WDY8 70 aa6.96□□□□□ -1.3
CUX1-206ENST00000437600 H7C1H1 209 aa6.96□□□□□ -1.3
CUX1-206ENST00000437600 MORN3Q6PF18 240 aaPredicted RBP6.96□□□□□ -1.3
CUX1-206ENST00000437600 LINC01006Q8NI28 216 aa6.96□□□□□ -1.3
CUX1-206ENST00000437600 PHLDA1Q8WV24 401 aaPredicted RBP6.96□□□□□ -1.3
CUX1-206ENST00000437600 HILS1P60008 231 aa6.95□□□□□ -1.3
CUX1-206ENST00000437600 C20orf78Q9BR46 151 aa6.95□□□□□ -1.3
CUX1-206ENST00000437600 C1QTNF4Q9BXJ3 329 aa6.95□□□□□ -1.3
CUX1-206ENST00000437600 RBMY1BA6NDE4 496 aaKnown RBP6.95□□□□□ -1.3
CUX1-206ENST00000437600 RBMY1EA6NEQ0 496 aaKnown RBP6.95□□□□□ -1.3
CUX1-206ENST00000437600 IGLL5B9A064 214 aa6.95□□□□□ -1.3
CUX1-206ENST00000437600 RBMY1DP0C7P1 496 aaKnown RBP6.95□□□□□ -1.3
CUX1-206ENST00000437600 RNF152Q8N8N0 203 aa6.95□□□□□ -1.3
CUX1-206ENST00000437600 HIST1H4GQ99525 98 aa6.95□□□□□ -1.3
CUX1-206ENST00000437600 E9PLD3 99 aa6.95□□□□□ -1.3
CUX1-206ENST00000437600 POLR2KP53803 58 aaKnown RBP6.95□□□□□ -1.3
CUX1-206ENST00000437600 GAGE13Q4V321 117 aa6.95□□□□□ -1.3
CUX1-206ENST00000437600 DYNLRB2Q8TF09 96 aa6.95□□□□□ -1.3
CUX1-206ENST00000437600 XCL2Q9UBD3 114 aa6.95□□□□□ -1.3
CUX1-206ENST00000437600 A0A1B0GWB2 263 aa6.94□□□□□ -1.3
CUX1-206ENST00000437600 C11orf86A6NJI1 115 aa6.94□□□□□ -1.3
CUX1-206ENST00000437600 HLA-DRB4P13762 266 aa6.94□□□□□ -1.3
CUX1-206ENST00000437600 TMEM170BQ5T4T1 132 aa6.94□□□□□ -1.3
CUX1-206ENST00000437600 C4orf3Q8WVX3 66 aa6.94□□□□□ -1.3
CUX1-206ENST00000437600 PLEKHB2Q96CS7 222 aa6.94□□□□□ -1.3
CUX1-206ENST00000437600 KIR2DL4Q99706 377 aa6.94□□□□□ -1.3
CUX1-206ENST00000437600 HLA-DRB4X5D2U9 266 aa6.94□□□□□ -1.3
CUX1-206ENST00000437600 IGHV3-38A0A0C4DH36 116 aa6.94□□□□□ -1.3
CUX1-206ENST00000437600 M0QY20 66 aa6.94□□□□□ -1.3
CUX1-206ENST00000437600 CRLF1O75462 422 aa6.94□□□□□ -1.3
CUX1-206ENST00000437600 NSUN5P1Q3KNT7 163 aa6.94□□□□□ -1.3
CUX1-206ENST00000437600 Q6ZSN1 163 aa6.94□□□□□ -1.3
CUX1-206ENST00000437600 CEND1Q8N111 149 aa6.94□□□□□ -1.3
CUX1-206ENST00000437600 TEX29Q8N6K0 151 aa6.94□□□□□ -1.3
CUX1-206ENST00000437600 PRADC1Q9BSG0 188 aa6.94□□□□□ -1.3
CUX1-206ENST00000437600 LGALS9O00182 355 aa6.93□□□□□ -1.3
CUX1-206ENST00000437600 RNASE1P07998 156 aaKnown RBP6.93□□□□□ -1.3
CUX1-206ENST00000437600 APOMO95445 188 aa6.93□□□□□ -1.3
CUX1-206ENST00000437600 SCGB1D4Q6XE38 83 aa6.93□□□□□ -1.3
CUX1-206ENST00000437600 SYT8Q8NBV8 401 aa6.93□□□□□ -1.3
CUX1-206ENST00000437600 HIGD1BQ9P298 99 aa6.93□□□□□ -1.3
CUX1-206ENST00000437600 CCL24O00175 119 aa6.93□□□□□ -1.3
CUX1-206ENST00000437600 VCYO14598 125 aa6.93□□□□□ -1.3
CUX1-206ENST00000437600 SPINK8P0C7L1 97 aa6.93□□□□□ -1.3
CUX1-206ENST00000437600 TMEM86BQ8N661 226 aa6.93□□□□□ -1.3
CUX1-206ENST00000437600 ZNRF2Q8NHG8 242 aa6.93□□□□□ -1.3
CUX1-206ENST00000437600 C9orf85Q96MD7 179 aa6.93□□□□□ -1.3
CUX1-206ENST00000437600 SMIM9A6NGZ8 99 aa6.92□□□□□ -1.3
CUX1-206ENST00000437600 IGIPA6NJ69 53 aa6.92□□□□□ -1.3
CUX1-206ENST00000437600 H3BMM0 161 aa6.92□□□□□ -1.3
CUX1-206ENST00000437600 PLNP26678 52 aa6.92□□□□□ -1.3
CUX1-206ENST00000437600 LINC01587Q99440 93 aa6.92□□□□□ -1.3
CUX1-206ENST00000437600 ZNF815PA8K554 130 aa6.92□□□□□ -1.3
CUX1-206ENST00000437600 C12orf74Q32Q52 190 aa6.92□□□□□ -1.3
CUX1-206ENST00000437600 TM2D2Q9BX73 214 aa6.92□□□□□ -1.3
CUX1-206ENST00000437600 NOTCH1P46531 2555 aa6.92□□□□□ -1.3
CUX1-206ENST00000437600 ADARB2-AS1A8MUL3 147 aa6.91□□□□□ -1.3
CUX1-206ENST00000437600 WFDC10AQ9H1F0 79 aa6.91□□□□□ -1.3
CUX1-206ENST00000437600 PEMTQ9UBM1 199 aa6.91□□□□□ -1.3
CUX1-206ENST00000437600 IGLV4-69A0A075B6H9 119 aa6.91□□□□□ -1.3
CUX1-206ENST00000437600 MT-ATP8P03928 68 aa6.91□□□□□ -1.3
CUX1-206ENST00000437600 SRSF9Q13242 221 aaKnown RBP eCLIP6.91□□□□□ -1.3
CUX1-206ENST00000437600 MYMXA0A1B0GTQ4 84 aa6.9□□□□□ -1.3
CUX1-206ENST00000437600 NXPH4O95158 308 aa6.9□□□□□ -1.3
CUX1-206ENST00000437600 TSPEAR-AS2P59090 65 aa6.9□□□□□ -1.3
CUX1-206ENST00000437600 KRTAP10-3P60369 221 aa6.9□□□□□ -1.3
CUX1-206ENST00000437600 DEFB114Q30KQ6 69 aa6.9□□□□□ -1.3
CUX1-206ENST00000437600 IGHV3-53P01767 116 aa6.9□□□□□ -1.3
CUX1-206ENST00000437600 MED14OSP0DP75 135 aa6.9□□□□□ -1.3
CUX1-206ENST00000437600 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP6.9□□□□□ -1.3
CUX1-206ENST00000437600 PRO0461Q9UI25 63 aa6.9□□□□□ -1.3
CUX1-206ENST00000437600 TRAV12-1A0A0B4J245 112 aa6.9□□□□□ -1.31
CUX1-206ENST00000437600 A8MZ25 164 aa6.9□□□□□ -1.31
CUX1-206ENST00000437600 RRN3P1Q2M238 152 aa6.9□□□□□ -1.31
CUX1-206ENST00000437600 MAP6D1Q9H9H5 199 aa6.9□□□□□ -1.31
CUX1-206ENST00000437600 A0A0J9YXV3 536 aa6.89□□□□□ -1.31
CUX1-206ENST00000437600 FOXI1Q12951 378 aa6.89□□□□□ -1.31
CUX1-206ENST00000437600 CDIP1Q9H305 208 aa6.89□□□□□ -1.31
CUX1-206ENST00000437600 TRBV27A0A0K0K1C4 114 aa6.89□□□□□ -1.31
CUX1-206ENST00000437600 PMVKQ15126 192 aa6.89□□□□□ -1.31
CUX1-206ENST00000437600 GAGE12JA6NER3 117 aa6.88□□□□□ -1.31
CUX1-206ENST00000437600 GAGE7O76087 117 aa6.88□□□□□ -1.31
CUX1-206ENST00000437600 GAGE12FP0CL80 117 aa6.88□□□□□ -1.31
CUX1-206ENST00000437600 GAGE12GP0CL81 117 aa6.88□□□□□ -1.31
CUX1-206ENST00000437600 GAGE12IP0CL82 117 aa6.88□□□□□ -1.31
CUX1-206ENST00000437600 XGP55808 180 aa6.88□□□□□ -1.31
CUX1-206ENST00000437600 GAGE4Q13068 117 aa6.88□□□□□ -1.31
CUX1-206ENST00000437600 MRPL23Q16540 153 aaKnown RBP6.88□□□□□ -1.31
CUX1-206ENST00000437600 ANK2Q01484 3957 aa6.88□□□□□ -1.31
CUX1-206ENST00000437600 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 394.8 ms