RNA–Protein interactions for RNA: ENST00000435201.5

LIMK1-203, Transcript of LIM domain kinase 1, humanhuman

TSL 1 (best)

Gene LIMK1, Length 1,883 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1-203ENST00000435201 A0A1W2PPM0 123 aa12.09□□□□□ -0.47
LIMK1-203ENST00000435201 SCGB1D4Q6XE38 83 aa12.09□□□□□ -0.47
LIMK1-203ENST00000435201 RNASE8Q8TDE3 154 aaKnown RBP12.09□□□□□ -0.47
LIMK1-203ENST00000435201 TMEM263Q8WUH6 116 aaKnown RBP12.09□□□□□ -0.47
LIMK1-203ENST00000435201 K7EP34 96 aa12.08□□□□□ -0.48
LIMK1-203ENST00000435201 PHLDA1Q8WV24 401 aaPredicted RBP12.08□□□□□ -0.48
LIMK1-203ENST00000435201 K7ERJ3 54 aa12.07□□□□□ -0.48
LIMK1-203ENST00000435201 FABP2P12104 132 aa12.07□□□□□ -0.48
LIMK1-203ENST00000435201 SAMD5Q5TGI4 173 aa12.07□□□□□ -0.48
LIMK1-203ENST00000435201 SPANXA1Q9NS26 97 aa12.07□□□□□ -0.48
LIMK1-203ENST00000435201 TRGV1A0A0A0MS02 117 aa12.06□□□□□ -0.48
LIMK1-203ENST00000435201 AMELXQ99217 191 aa12.06□□□□□ -0.48
LIMK1-203ENST00000435201 SMR3AQ99954 134 aa12.06□□□□□ -0.48
LIMK1-203ENST00000435201 NAA38Q9BRA0 125 aaKnown RBP12.06□□□□□ -0.48
LIMK1-203ENST00000435201 CHCHD7Q9BUK0 85 aa12.06□□□□□ -0.48
LIMK1-203ENST00000435201 TMEM223A0PJW6 202 aa12.06□□□□□ -0.48
LIMK1-203ENST00000435201 COTL1Q14019 142 aa12.06□□□□□ -0.48
LIMK1-203ENST00000435201 NDUFA11Q86Y39 141 aa12.06□□□□□ -0.48
LIMK1-203ENST00000435201 PLEKHB2Q96CS7 222 aa12.06□□□□□ -0.48
LIMK1-203ENST00000435201 C1QTNF4Q9BXJ3 329 aa12.06□□□□□ -0.48
LIMK1-203ENST00000435201 MTORP42345 2549 aa12.05□□□□□ -0.48
LIMK1-203ENST00000435201 J3QQQ9 107 aa12.05□□□□□ -0.48
LIMK1-203ENST00000435201 C12orf74Q32Q52 190 aa12.05□□□□□ -0.48
LIMK1-203ENST00000435201 C19orf73Q9NVV2 129 aa12.05□□□□□ -0.48
LIMK1-203ENST00000435201 Q9UF83 564 aa12.05□□□□□ -0.48
LIMK1-203ENST00000435201 A0A1B0GWB2 263 aa12.04□□□□□ -0.48
LIMK1-203ENST00000435201 LEPROTO15243 131 aa12.04□□□□□ -0.48
LIMK1-203ENST00000435201 ZNF22P17026 224 aaPredicted RBP12.04□□□□□ -0.48
LIMK1-203ENST00000435201 LGALS3P17931 250 aaKnown RBP12.04□□□□□ -0.48
LIMK1-203ENST00000435201 OR5A1Q8NGJ0 315 aa12.04□□□□□ -0.48
LIMK1-203ENST00000435201 SPCS1Q9Y6A9 102 aa12.04□□□□□ -0.48
LIMK1-203ENST00000435201 A0A0J9YXV3 536 aa12.04□□□□□ -0.48
LIMK1-203ENST00000435201 TMEM238LA0A1B0GVL6 79 aa12.04□□□□□ -0.48
LIMK1-203ENST00000435201 A6NJY4 79 aa12.04□□□□□ -0.48
LIMK1-203ENST00000435201 LY6G6DO95868 133 aa12.04□□□□□ -0.48
LIMK1-203ENST00000435201 TSPEAR-AS2P59090 65 aa12.04□□□□□ -0.48
LIMK1-203ENST00000435201 C16orf74Q96GX8 76 aa12.04□□□□□ -0.48
LIMK1-203ENST00000435201 UBE2D4Q9Y2X8 147 aa12.04□□□□□ -0.48
LIMK1-203ENST00000435201 TRAV4A0A0B4J268 109 aa12.03□□□□□ -0.48
LIMK1-203ENST00000435201 A0A0J9YY99 117 aa12.03□□□□□ -0.48
LIMK1-203ENST00000435201 GAGE12BA1L429 117 aa12.03□□□□□ -0.48
LIMK1-203ENST00000435201 GIG44P09565 113 aaPredicted RBP12.03□□□□□ -0.48
LIMK1-203ENST00000435201 DAZ2Q13117 558 aaKnown RBP12.03□□□□□ -0.48
LIMK1-203ENST00000435201 FAM104AQ969W3 186 aa12.03□□□□□ -0.48
LIMK1-203ENST00000435201 SPANXB1Q9NS25 103 aaPredicted RBP12.03□□□□□ -0.48
LIMK1-203ENST00000435201 TRBV10-1A0A0K0K1A3 114 aa12.02□□□□□ -0.48
LIMK1-203ENST00000435201 MRPS36P82909 103 aaKnown RBP12.02□□□□□ -0.48
LIMK1-203ENST00000435201 SRSF9Q13242 221 aaKnown RBP eCLIP12.02□□□□□ -0.48
LIMK1-203ENST00000435201 IGLL5B9A064 214 aa12.02□□□□□ -0.49
LIMK1-203ENST00000435201 Q6ZTI0 123 aa12.02□□□□□ -0.49
LIMK1-203ENST00000435201 WFDC10AQ9H1F0 79 aa12.02□□□□□ -0.49
LIMK1-203ENST00000435201 FASNP49327 2511 aaKnown RBP12.01□□□□□ -0.49
LIMK1-203ENST00000435201 HIVEP2P31629 2446 aa12.01□□□□□ -0.49
LIMK1-203ENST00000435201 IGHV3-38A0A0C4DH36 116 aa12.01□□□□□ -0.49
LIMK1-203ENST00000435201 K7EQD1 137 aa12.01□□□□□ -0.49
LIMK1-203ENST00000435201 RPL35AP18077 110 aaKnown RBP12.01□□□□□ -0.49
LIMK1-203ENST00000435201 ZNF479Q96JC4 524 aa12.01□□□□□ -0.49
LIMK1-203ENST00000435201 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12□□□□□ -0.49
LIMK1-203ENST00000435201 IGKV2-29A2NJV5 120 aaPredicted RBP12□□□□□ -0.49
LIMK1-203ENST00000435201 PF4P02776 101 aa12□□□□□ -0.49
LIMK1-203ENST00000435201 CEMP1Q6PRD7 247 aaPredicted RBP12□□□□□ -0.49
LIMK1-203ENST00000435201 SETD2Q9BYW2 2564 aaPredicted RBP12□□□□□ -0.49
LIMK1-203ENST00000435201 RPL36AP83881 106 aaKnown RBP12□□□□□ -0.49
LIMK1-203ENST00000435201 SLC25A29Q8N8R3 303 aa12□□□□□ -0.49
LIMK1-203ENST00000435201 RPL36ALQ969Q0 106 aaKnown RBP12□□□□□ -0.49
LIMK1-203ENST00000435201 TIMM21Q9BVV7 248 aa12□□□□□ -0.49
LIMK1-203ENST00000435201 TINCRA0A1B0GVN0 87 aa11.99□□□□□ -0.49
LIMK1-203ENST00000435201 KRTAP10-3P60369 221 aa11.99□□□□□ -0.49
LIMK1-203ENST00000435201 CSNK1G2-AS1Q8NCQ2 148 aa11.99□□□□□ -0.49
LIMK1-203ENST00000435201 NOP10Q9NPE3 64 aaKnown RBP11.99□□□□□ -0.49
LIMK1-203ENST00000435201 CIDEAO60543 219 aa11.98□□□□□ -0.49
LIMK1-203ENST00000435201 DAZ4Q86SG3 579 aaKnown RBP11.98□□□□□ -0.49
LIMK1-203ENST00000435201 LINC00482Q8N8I6 264 aa11.98□□□□□ -0.49
LIMK1-203ENST00000435201 DAZ3Q9NR90 486 aaKnown RBP11.98□□□□□ -0.49
LIMK1-203ENST00000435201 RRN3P1Q2M238 152 aa11.97□□□□□ -0.49
LIMK1-203ENST00000435201 Q6ZUT4 128 aa11.97□□□□□ -0.49
LIMK1-203ENST00000435201 SETXQ7Z333 2677 aaKnown RBP11.97□□□□□ -0.49
LIMK1-203ENST00000435201 GCN1Q92616 2671 aaKnown RBP11.97□□□□□ -0.49
LIMK1-203ENST00000435201 PLAC8L1A1L4L8 177 aa11.97□□□□□ -0.49
LIMK1-203ENST00000435201 UBE2D1P51668 147 aa11.97□□□□□ -0.49
LIMK1-203ENST00000435201 OVOL2Q9BRP0 275 aa11.97□□□□□ -0.49
LIMK1-203ENST00000435201 IGHV3-30P01768 117 aa11.96□□□□□ -0.49
LIMK1-203ENST00000435201 IGHV3-30-5P0DP03 117 aa11.96□□□□□ -0.49
LIMK1-203ENST00000435201 FOSL1P15407 271 aa11.96□□□□□ -0.49
LIMK1-203ENST00000435201 RNASE13Q5GAN3 156 aaKnown RBP11.95□□□□□ -0.5
LIMK1-203ENST00000435201 IGHV3-64A0A075B6Q5 118 aa11.95□□□□□ -0.5
LIMK1-203ENST00000435201 UBE2D3P61077 147 aa11.95□□□□□ -0.5
LIMK1-203ENST00000435201 UBE2D2P62837 147 aa11.95□□□□□ -0.5
LIMK1-203ENST00000435201 SMAGPQ0VAQ4 97 aa11.95□□□□□ -0.5
LIMK1-203ENST00000435201 DGAT2L7PQ6IED9 249 aa11.95□□□□□ -0.5
LIMK1-203ENST00000435201 IGHV1-58A0A0C4DH39 117 aa11.94□□□□□ -0.5
LIMK1-203ENST00000435201 IGHV3-30-3P0DP02 117 aa11.94□□□□□ -0.5
LIMK1-203ENST00000435201 OCIAD2Q56VL3 154 aa11.94□□□□□ -0.5
LIMK1-203ENST00000435201 TRGV2A0A075B6R0 118 aa11.93□□□□□ -0.5
LIMK1-203ENST00000435201 TMEM238C9JI98 176 aa11.93□□□□□ -0.5
LIMK1-203ENST00000435201 INAFM1C9JVW0 142 aa11.93□□□□□ -0.5
LIMK1-203ENST00000435201 GAGE7O76087 117 aa11.93□□□□□ -0.5
LIMK1-203ENST00000435201 GAGE12FP0CL80 117 aa11.93□□□□□ -0.5
LIMK1-203ENST00000435201 GAGE12GP0CL81 117 aa11.93□□□□□ -0.5
LIMK1-203ENST00000435201 GAGE12IP0CL82 117 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms