RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.58□□□□□ -0.56
PTPRF-206ENST00000429895 XAGE1AQ9HD64 81 aa11.58□□□□□ -0.56
PTPRF-206ENST00000429895 DENND4CQ5VZ89 1909 aa11.58□□□□□ -0.56
PTPRF-206ENST00000429895 A0A0J9YXY3 114 aa11.57□□□□□ -0.56
PTPRF-206ENST00000429895 HRCT1Q6UXD1 115 aa11.57□□□□□ -0.56
PTPRF-206ENST00000429895 C19orf71A6NCJ1 209 aa11.57□□□□□ -0.56
PTPRF-206ENST00000429895 LY6G6DO95868 133 aa11.57□□□□□ -0.56
PTPRF-206ENST00000429895 SHANK1Q9Y566 2161 aa11.57□□□□□ -0.56
PTPRF-206ENST00000429895 WFDC10BQ8IUB3 73 aa11.56□□□□□ -0.56
PTPRF-206ENST00000429895 SHISA2Q6UWI4 295 aa11.56□□□□□ -0.56
PTPRF-206ENST00000429895 TAX1BP3O14907 124 aa11.55□□□□□ -0.56
PTPRF-206ENST00000429895 KIR2DL5BQ8NHK3 375 aa11.55□□□□□ -0.56
PTPRF-206ENST00000429895 PPDPFQ9H3Y8 114 aa11.55□□□□□ -0.56
PTPRF-206ENST00000429895 A0A0J9YWU9 116 aa11.55□□□□□ -0.56
PTPRF-206ENST00000429895 SMIM9A6NGZ8 99 aa11.55□□□□□ -0.56
PTPRF-206ENST00000429895 Q6ZSV7 163 aa11.55□□□□□ -0.56
PTPRF-206ENST00000429895 NEXN-AS1Q8NBZ9 246 aa11.55□□□□□ -0.56
PTPRF-206ENST00000429895 TCL1BO95988 128 aa11.55□□□□□ -0.56
PTPRF-206ENST00000429895 H3BT86 120 aa11.55□□□□□ -0.56
PTPRF-206ENST00000429895 COA6Q5JTJ3 125 aaKnown RBP11.55□□□□□ -0.56
PTPRF-206ENST00000429895 UBE2D1P51668 147 aa11.55□□□□□ -0.56
PTPRF-206ENST00000429895 LINC00322Q6ZN03 302 aaPredicted RBP11.55□□□□□ -0.56
PTPRF-206ENST00000429895 C7orf33Q8WU49 177 aa11.55□□□□□ -0.56
PTPRF-206ENST00000429895 USP17L23D6RBM5 183 aa11.54□□□□□ -0.56
PTPRF-206ENST00000429895 PROK1P58294 105 aa11.54□□□□□ -0.56
PTPRF-206ENST00000429895 K7EQG2 157 aa11.54□□□□□ -0.56
PTPRF-206ENST00000429895 SPINK6Q6UWN8 80 aa11.54□□□□□ -0.56
PTPRF-206ENST00000429895 ZNF843Q8N446 348 aa11.54□□□□□ -0.56
PTPRF-206ENST00000429895 SPTSSBQ8NFR3 76 aa11.54□□□□□ -0.56
PTPRF-206ENST00000429895 TNRC6AQ8NDV7 1962 aaKnown RBP11.54□□□□□ -0.56
PTPRF-206ENST00000429895 LY6G6CO95867 125 aa11.53□□□□□ -0.56
PTPRF-206ENST00000429895 CDKN2A-AS1Q9UH64 79 aa11.53□□□□□ -0.56
PTPRF-206ENST00000429895 PDE6GP18545 87 aa11.53□□□□□ -0.56
PTPRF-206ENST00000429895 GDF5OSQ5U4N7 250 aa11.53□□□□□ -0.56
PTPRF-206ENST00000429895 C22orf34Q6ZV56 151 aa11.53□□□□□ -0.56
PTPRF-206ENST00000429895 PCNX2A6NKB5 2137 aa11.53□□□□□ -0.56
PTPRF-206ENST00000429895 TNCP24821 2201 aa11.52□□□□□ -0.56
PTPRF-206ENST00000429895 IGKV2-28A0A075B6P5 120 aa11.52□□□□□ -0.56
PTPRF-206ENST00000429895 IGKV2D-28P01615 120 aa11.52□□□□□ -0.56
PTPRF-206ENST00000429895 PIK3CD-AS1Q5SR53 167 aa11.52□□□□□ -0.56
PTPRF-206ENST00000429895 BBC3Q96PG8 261 aaPredicted RBP11.52□□□□□ -0.57
PTPRF-206ENST00000429895 LYPD6Q86Y78 171 aa11.52□□□□□ -0.57
PTPRF-206ENST00000429895 LINC00526Q96FQ7 95 aa11.52□□□□□ -0.57
PTPRF-206ENST00000429895 J3KT08 172 aa11.51□□□□□ -0.57
PTPRF-206ENST00000429895 CFAP126Q5VTH2 177 aa11.51□□□□□ -0.57
PTPRF-206ENST00000429895 SDIM1Q6ZPB5 146 aa11.51□□□□□ -0.57
PTPRF-206ENST00000429895 Q8N976 141 aa11.51□□□□□ -0.57
PTPRF-206ENST00000429895 BRK1Q8WUW1 75 aa11.51□□□□□ -0.57
PTPRF-206ENST00000429895 C1orf229Q6ZS94 237 aaPredicted RBP11.51□□□□□ -0.57
PTPRF-206ENST00000429895 MPLKIPQ8TAP9 179 aa11.5□□□□□ -0.57
PTPRF-206ENST00000429895 ODF3Q96PU9 254 aa11.5□□□□□ -0.57
PTPRF-206ENST00000429895 MIFP14174 115 aa11.5□□□□□ -0.57
PTPRF-206ENST00000429895 C9orf85Q96MD7 179 aa11.5□□□□□ -0.57
PTPRF-206ENST00000429895 UBE2D4Q9Y2X8 147 aa11.5□□□□□ -0.57
PTPRF-206ENST00000429895 ZFHX2Q9C0A1 2572 aaPredicted RBP11.5□□□□□ -0.57
PTPRF-206ENST00000429895 TRBV6-8A0A0A6YYG3 113 aa11.5□□□□□ -0.57
PTPRF-206ENST00000429895 TRAV10A0A0B4J240 114 aa11.49□□□□□ -0.57
PTPRF-206ENST00000429895 C1orf158Q8N1D5 194 aa11.49□□□□□ -0.57
PTPRF-206ENST00000429895 WFDC10AQ9H1F0 79 aa11.49□□□□□ -0.57
PTPRF-206ENST00000429895 SYCNQ0VAF6 134 aa11.49□□□□□ -0.57
PTPRF-206ENST00000429895 MLST8Q9BVC4 326 aa11.49□□□□□ -0.57
PTPRF-206ENST00000429895 DENND4AQ7Z401 1863 aa11.49□□□□□ -0.57
PTPRF-206ENST00000429895 C3orf22Q8N5N4 141 aa11.48□□□□□ -0.57
PTPRF-206ENST00000429895 CREBBPQ92793 2442 aa11.48□□□□□ -0.57
PTPRF-206ENST00000429895 TEX49A0A1B0GTD5 131 aa11.48□□□□□ -0.57
PTPRF-206ENST00000429895 C18orf65Q6ZTR6 163 aa11.48□□□□□ -0.57
PTPRF-206ENST00000429895 IGLV4-3A0A075B6K6 122 aa11.47□□□□□ -0.57
PTPRF-206ENST00000429895 C3orf84H3BNL1 204 aa11.47□□□□□ -0.57
PTPRF-206ENST00000429895 H7C423 109 aa11.47□□□□□ -0.57
PTPRF-206ENST00000429895 ENHOQ6UWT2 76 aa11.47□□□□□ -0.57
PTPRF-206ENST00000429895 TMEM131Q92545 1883 aa11.47□□□□□ -0.57
PTPRF-206ENST00000429895 FAM208BQ5VWN6 2430 aa11.46□□□□□ -0.57
PTPRF-206ENST00000429895 TMEM223A0PJW6 202 aa11.46□□□□□ -0.57
PTPRF-206ENST00000429895 RNASE8Q8TDE3 154 aaKnown RBP11.46□□□□□ -0.57
PTPRF-206ENST00000429895 LOC100131303A0A0U1RQF7 123 aa11.46□□□□□ -0.58
PTPRF-206ENST00000429895 IGLV2-8P01709 118 aa11.46□□□□□ -0.58
PTPRF-206ENST00000429895 IGLC6P0CF74 106 aa11.46□□□□□ -0.58
PTPRF-206ENST00000429895 LY6LH3BQJ8 138 aa11.45□□□□□ -0.58
PTPRF-206ENST00000429895 PTPRQQ9UMZ3 2332 aa11.45□□□□□ -0.58
PTPRF-206ENST00000429895 ZNF22P17026 224 aaPredicted RBP11.45□□□□□ -0.58
PTPRF-206ENST00000429895 LINC00643Q86TS7 51 aa11.45□□□□□ -0.58
PTPRF-206ENST00000429895 RPL37AP8A6NKH3 93 aa11.45□□□□□ -0.58
PTPRF-206ENST00000429895 A0A1B0GXF2 115 aa11.45□□□□□ -0.58
PTPRF-206ENST00000429895 OBSL1O75147 1896 aa11.45□□□□□ -0.58
PTPRF-206ENST00000429895 CLUHP3Q96NS8 147 aa11.45□□□□□ -0.58
PTPRF-206ENST00000429895 UBE2D3P61077 147 aa11.44□□□□□ -0.58
PTPRF-206ENST00000429895 SPATA12Q7Z6I5 190 aa11.44□□□□□ -0.58
PTPRF-206ENST00000429895 A8MZ25 164 aa11.44□□□□□ -0.58
PTPRF-206ENST00000429895 BRWD1-AS2P59051 145 aa11.44□□□□□ -0.58
PTPRF-206ENST00000429895 KPRPQ5T749 579 aaPredicted RBP11.44□□□□□ -0.58
PTPRF-206ENST00000429895 C20orf197Q8N268 126 aa11.44□□□□□ -0.58
PTPRF-206ENST00000429895 IGLV9-49A0A0B4J1Y8 123 aa11.44□□□□□ -0.58
PTPRF-206ENST00000429895 LINC00308Q8TCZ7 52 aa11.44□□□□□ -0.58
PTPRF-206ENST00000429895 PLXNB3Q9ULL4 1909 aa11.44□□□□□ -0.58
PTPRF-206ENST00000429895 PRM2P04554 102 aa11.43□□□□□ -0.58
PTPRF-206ENST00000429895 C6orf99Q4VX62 202 aa11.43□□□□□ -0.58
PTPRF-206ENST00000429895 ZNF702PQ9H963 129 aa11.43□□□□□ -0.58
PTPRF-206ENST00000429895 DSCAML1Q8TD84 2053 aa11.43□□□□□ -0.58
PTPRF-206ENST00000429895 SPANXB1Q9NS25 103 aaPredicted RBP11.43□□□□□ -0.58
PTPRF-206ENST00000429895 C11orf1Q9H5F2 150 aa11.43□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 192.1 ms