RNA–Protein interactions for RNA: ENST00000427947.7

USP40-204, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 794 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-204ENST00000427947 TIAM2Q8IVF5 1701 aa1.62□□□□□ -2.15
USP40-204ENST00000427947 HSPG2P98160 4391 aa1.62□□□□□ -2.15
USP40-204ENST00000427947 DLEC1Q9Y238 1755 aa1.62□□□□□ -2.15
USP40-204ENST00000427947 MYH7P12883 1935 aa1.62□□□□□ -2.15
USP40-204ENST00000427947 PKDREJQ9NTG1 2253 aa1.61□□□□□ -2.15
USP40-204ENST00000427947 PTPRBP23467 1997 aa1.61□□□□□ -2.15
USP40-204ENST00000427947 DUOX1Q9NRD9 1551 aa1.61□□□□□ -2.15
USP40-204ENST00000427947 TRBV6-5A0A0K0K1A5 114 aa1.61□□□□□ -2.15
USP40-204ENST00000427947 A0A1B0GV90 55 aa1.61□□□□□ -2.15
USP40-204ENST00000427947 GNG7O60262 68 aa1.61□□□□□ -2.15
USP40-204ENST00000427947 TPST1O60507 370 aa1.61□□□□□ -2.15
USP40-204ENST00000427947 CXCL8P10145 99 aa1.61□□□□□ -2.15
USP40-204ENST00000427947 HLA-DRB4P13762 266 aa1.61□□□□□ -2.15
USP40-204ENST00000427947 ETV6P41212 452 aa1.61□□□□□ -2.15
USP40-204ENST00000427947 DNAJB13P59910 316 aa1.61□□□□□ -2.15
USP40-204ENST00000427947 KRTAP12-1P59990 96 aa1.61□□□□□ -2.15
USP40-204ENST00000427947 PDE6HQ13956 83 aa1.61□□□□□ -2.15
USP40-204ENST00000427947 GLIPR1L1Q6UWM5 242 aa1.61□□□□□ -2.15
USP40-204ENST00000427947 CASC2Q6XLA1 102 aa1.61□□□□□ -2.15
USP40-204ENST00000427947 OR4C6Q8NH72 309 aa1.61□□□□□ -2.15
USP40-204ENST00000427947 CCL4L1Q8NHW4 92 aa1.61□□□□□ -2.15
USP40-204ENST00000427947 Q8TAT8 98 aa1.61□□□□□ -2.15
USP40-204ENST00000427947 ZNF431Q8TF32 576 aaPredicted RBP1.61□□□□□ -2.15
USP40-204ENST00000427947 ARL11Q969Q4 196 aa1.61□□□□□ -2.15
USP40-204ENST00000427947 NABP2Q9BQ15 211 aa1.61□□□□□ -2.15
USP40-204ENST00000427947 REG4Q9BYZ8 158 aa1.61□□□□□ -2.15
USP40-204ENST00000427947 HLA-DRB4X5D2U9 266 aa1.61□□□□□ -2.15
USP40-204ENST00000427947 ANKRD36CQ5JPF3 1778 aa1.61□□□□□ -2.15
USP40-204ENST00000427947 MYO9BQ13459 2157 aa1.61□□□□□ -2.15
USP40-204ENST00000427947 SCN7AQ01118 1682 aa1.61□□□□□ -2.15
USP40-204ENST00000427947 TCHHQ07283 1943 aa1.6□□□□□ -2.15
USP40-204ENST00000427947 DNAH9Q9NYC9 4486 aa1.6□□□□□ -2.15
USP40-204ENST00000427947 EML6Q6ZMW3 1958 aa1.6□□□□□ -2.15
USP40-204ENST00000427947 FAM236AA0A1B0GUQ0 79 aa1.6□□□□□ -2.15
USP40-204ENST00000427947 FAM236BA0A1B0GV22 79 aa1.6□□□□□ -2.15
USP40-204ENST00000427947 ZNF727A8MUV8 499 aa1.6□□□□□ -2.15
USP40-204ENST00000427947 K7EP13 123 aa1.6□□□□□ -2.15
USP40-204ENST00000427947 NPFFO15130 113 aa1.6□□□□□ -2.15
USP40-204ENST00000427947 CD14P08571 375 aa1.6□□□□□ -2.15
USP40-204ENST00000427947 ZNF93P35789 620 aaPredicted RBP1.6□□□□□ -2.15
USP40-204ENST00000427947 RRAS2P62070 204 aaPredicted RBP1.6□□□□□ -2.15
USP40-204ENST00000427947 QRFPP83859 136 aa1.6□□□□□ -2.15
USP40-204ENST00000427947 C1orf137Q5JT78 98 aa1.6□□□□□ -2.15
USP40-204ENST00000427947 FAM74A1Q5RGS3 127 aa1.6□□□□□ -2.15
USP40-204ENST00000427947 TMEM91Q6ZNR0 172 aa1.6□□□□□ -2.15
USP40-204ENST00000427947 TEN1Q86WV5 123 aa1.6□□□□□ -2.15
USP40-204ENST00000427947 C10orf111Q8N326 155 aa1.6□□□□□ -2.15
USP40-204ENST00000427947 OTOSQ8NHW6 89 aa1.6□□□□□ -2.15
USP40-204ENST00000427947 SLC35B3Q9H1N7 401 aa1.6□□□□□ -2.15
USP40-204ENST00000427947 TMEM106BQ9NUM4 274 aa1.6□□□□□ -2.15
USP40-204ENST00000427947 KLK9Q9UKQ9 250 aa1.6□□□□□ -2.15
USP40-204ENST00000427947 SPEF2Q9C093 1822 aa1.6□□□□□ -2.15
USP40-204ENST00000427947 NCKAP5O14513 1909 aa1.6□□□□□ -2.15
USP40-204ENST00000427947 PKD1P98161 4303 aa1.59□□□□□ -2.15
USP40-204ENST00000427947 BCORQ6W2J9 1755 aa1.59□□□□□ -2.15
USP40-204ENST00000427947 ARFGEF2Q9Y6D5 1785 aa1.59□□□□□ -2.15
USP40-204ENST00000427947 TRGV2A0A075B6R0 118 aa1.59□□□□□ -2.15
USP40-204ENST00000427947 IGHV1-24A0A0C4DH33 117 aa1.59□□□□□ -2.15
USP40-204ENST00000427947 F8W036 122 aa1.59□□□□□ -2.15
USP40-204ENST00000427947 EDF1O60869 148 aaKnown RBP1.59□□□□□ -2.15
USP40-204ENST00000427947 HYPMO75409 117 aa1.59□□□□□ -2.15
USP40-204ENST00000427947 RBP4P02753 201 aa1.59□□□□□ -2.15
USP40-204ENST00000427947 C10orf55Q5SWW7 151 aa1.59□□□□□ -2.15
USP40-204ENST00000427947 C4orf3Q8WVX3 66 aa1.59□□□□□ -2.15
USP40-204ENST00000427947 SMIM7Q9BQ49 75 aa1.59□□□□□ -2.15
USP40-204ENST00000427947 NAA38Q9BRA0 125 aaKnown RBP1.59□□□□□ -2.15
USP40-204ENST00000427947 METTL1Q9UBP6 276 aaKnown RBP1.59□□□□□ -2.15
USP40-204ENST00000427947 AKAP11Q9UKA4 1901 aa1.59□□□□□ -2.15
USP40-204ENST00000427947 A0A0G2JMZ2 1700 aa1.59□□□□□ -2.16
USP40-204ENST00000427947 DDX60Q8IY21 1712 aaKnown RBP1.59□□□□□ -2.16
USP40-204ENST00000427947 A0A1B0GUL6 1792 aa1.59□□□□□ -2.16
USP40-204ENST00000427947 MGAMO43451 1857 aa1.58□□□□□ -2.16
USP40-204ENST00000427947 TRPM7Q96QT4 1865 aa1.58□□□□□ -2.16
USP40-204ENST00000427947 ZNF609O15014 1411 aa1.58□□□□□ -2.16
USP40-204ENST00000427947 MYH13Q9UKX3 1938 aa1.58□□□□□ -2.16
USP40-204ENST00000427947 ARAP2Q8WZ64 1704 aa1.58□□□□□ -2.16
USP40-204ENST00000427947 PNMA8CA0A1B0GUJ8 204 aa1.58□□□□□ -2.16
USP40-204ENST00000427947 ZNF736B4DX44 427 aaPredicted RBP1.58□□□□□ -2.16
USP40-204ENST00000427947 ZNF670-ZNF695F2Z2N8 137 aa1.58□□□□□ -2.16
USP40-204ENST00000427947 F8W1H4 67 aa1.58□□□□□ -2.16
USP40-204ENST00000427947 CD3DP04234 171 aa1.58□□□□□ -2.16
USP40-204ENST00000427947 TSPAN19P0C672 248 aa1.58□□□□□ -2.16
USP40-204ENST00000427947 GUCA1AP43080 201 aaPredicted RBP1.58□□□□□ -2.16
USP40-204ENST00000427947 ZNF833PQ6ZTB9 187 aa1.58□□□□□ -2.16
USP40-204ENST00000427947 OR5AS1Q8N127 324 aa1.58□□□□□ -2.16
USP40-204ENST00000427947 C1orf54Q8WWF1 131 aa1.58□□□□□ -2.16
USP40-204ENST00000427947 ZNF625Q96I27 306 aaPredicted RBP1.58□□□□□ -2.16
USP40-204ENST00000427947 LINC00470Q9BZP3 86 aa1.58□□□□□ -2.16
USP40-204ENST00000427947 CDC42SE1Q9NRR8 79 aa1.58□□□□□ -2.16
USP40-204ENST00000427947 DNAJC15Q9Y5T4 150 aa1.58□□□□□ -2.16
USP40-204ENST00000427947 CHCHD2Q9Y6H1 151 aaPredicted RBP1.58□□□□□ -2.16
USP40-204ENST00000427947 PSME4Q14997 1843 aa1.58□□□□□ -2.16
USP40-204ENST00000427947 DOCK2Q92608 1830 aa1.58□□□□□ -2.16
USP40-204ENST00000427947 KIAA2026Q5HYC2 2103 aa1.58□□□□□ -2.16
USP40-204ENST00000427947 MYH10P35580 1976 aa1.58□□□□□ -2.16
USP40-204ENST00000427947 A0A087WSZ3 146 aa1.57□□□□□ -2.16
USP40-204ENST00000427947 BBIP1A8MTZ0 92 aa1.57□□□□□ -2.16
USP40-204ENST00000427947 DNAL4O96015 105 aa1.57□□□□□ -2.16
USP40-204ENST00000427947 SELENOWP63302 87 aa1.57□□□□□ -2.16
USP40-204ENST00000427947 MIR22HGQ0VDD5 57 aa1.57□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms