RNA–Protein interactions for RNA: ENST00000423058.6

SCN1A-204, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SCN1A, Length 8,191 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-204ENST00000423058 ZNF503-AS2A6NEH8 195 aa5.25□□□□□ -1.57
SCN1A-204ENST00000423058 H3BT86 120 aa5.25□□□□□ -1.57
SCN1A-204ENST00000423058 E9PLD3 99 aa5.25□□□□□ -1.57
SCN1A-204ENST00000423058 PRORYQ9H606 182 aa5.25□□□□□ -1.57
SCN1A-204ENST00000423058 A0A0J9YXV3 536 aa5.25□□□□□ -1.57
SCN1A-204ENST00000423058 MRPL55Q7Z7F7 128 aaKnown RBP5.25□□□□□ -1.57
SCN1A-204ENST00000423058 PCP2Q8IVA1 136 aa5.25□□□□□ -1.57
SCN1A-204ENST00000423058 NRGNQ92686 78 aa5.25□□□□□ -1.57
SCN1A-204ENST00000423058 FSHBP01225 129 aa5.24□□□□□ -1.57
SCN1A-204ENST00000423058 WT1P19544 449 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-204ENST00000423058 ZNF726P1Q15940 193 aa5.24□□□□□ -1.57
SCN1A-204ENST00000423058 FBXL19-AS1Q494R0 122 aa5.24□□□□□ -1.57
SCN1A-204ENST00000423058 TEN1Q86WV5 123 aa5.24□□□□□ -1.57
SCN1A-204ENST00000423058 NAV3Q8IVL0 2385 aa5.24□□□□□ -1.57
SCN1A-204ENST00000423058 K7EN84 100 aa5.24□□□□□ -1.57
SCN1A-204ENST00000423058 LY6G6CO95867 125 aa5.24□□□□□ -1.57
SCN1A-204ENST00000423058 UBE2D2P62837 147 aa5.24□□□□□ -1.57
SCN1A-204ENST00000423058 MIAQ16674 131 aa5.24□□□□□ -1.57
SCN1A-204ENST00000423058 TNFRSF13BO14836 293 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-204ENST00000423058 CRYGBP07316 175 aa5.24□□□□□ -1.57
SCN1A-204ENST00000423058 DAND5Q8N907 189 aa5.24□□□□□ -1.57
SCN1A-204ENST00000423058 A0A0J9YX75 114 aa5.24□□□□□ -1.57
SCN1A-204ENST00000423058 PRYO14603 147 aa5.24□□□□□ -1.57
SCN1A-204ENST00000423058 FAM222AQ5U5X8 452 aa5.24□□□□□ -1.57
SCN1A-204ENST00000423058 CTRLP40313 264 aa5.23□□□□□ -1.57
SCN1A-204ENST00000423058 RPL39P62891 51 aaKnown RBP5.23□□□□□ -1.57
SCN1A-204ENST00000423058 ATP5EP2Q5VTU8 51 aa5.23□□□□□ -1.57
SCN1A-204ENST00000423058 Q6YL49 198 aa5.23□□□□□ -1.57
SCN1A-204ENST00000423058 IGLV3-1P01715 115 aa5.23□□□□□ -1.57
SCN1A-204ENST00000423058 CHCHD10Q8WYQ3 142 aaPredicted RBP5.23□□□□□ -1.57
SCN1A-204ENST00000423058 DHRS4-AS1Q9P1J3 65 aa5.23□□□□□ -1.57
SCN1A-204ENST00000423058 NUPR2A6NF83 97 aa5.23□□□□□ -1.57
SCN1A-204ENST00000423058 INAFM1C9JVW0 142 aa5.23□□□□□ -1.57
SCN1A-204ENST00000423058 IGHV4-31P0DP07 118 aa5.23□□□□□ -1.57
SCN1A-204ENST00000423058 HIST2H2BDQ6DRA6 164 aa5.23□□□□□ -1.57
SCN1A-204ENST00000423058 WFDC10BQ8IUB3 73 aa5.23□□□□□ -1.57
SCN1A-204ENST00000423058 A6NDX4 124 aa5.23□□□□□ -1.57
SCN1A-204ENST00000423058 C11orf53Q8IXP5 236 aa5.22□□□□□ -1.57
SCN1A-204ENST00000423058 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-204ENST00000423058 C9orf85Q96MD7 179 aa5.22□□□□□ -1.57
SCN1A-204ENST00000423058 ANKHD1Q8IWZ3 2542 aaKnown RBP5.22□□□□□ -1.57
SCN1A-204ENST00000423058 TEX49A0A1B0GTD5 131 aa5.22□□□□□ -1.57
SCN1A-204ENST00000423058 NDUFC1O43677 76 aa5.22□□□□□ -1.57
SCN1A-204ENST00000423058 FAM19A5Q7Z5A7 132 aaPredicted RBP5.22□□□□□ -1.57
SCN1A-204ENST00000423058 RITA1Q96K30 269 aa5.22□□□□□ -1.57
SCN1A-204ENST00000423058 SIRPDQ9H106 197 aa5.22□□□□□ -1.57
SCN1A-204ENST00000423058 Q8N976 141 aa5.21□□□□□ -1.58
SCN1A-204ENST00000423058 LOC107984640A0A0U1RRK4 108 aa5.21□□□□□ -1.58
SCN1A-204ENST00000423058 B5MCH6 92 aa5.21□□□□□ -1.58
SCN1A-204ENST00000423058 ADCYAP1P18509 176 aa5.21□□□□□ -1.58
SCN1A-204ENST00000423058 RNF185Q96GF1 192 aa5.21□□□□□ -1.58
SCN1A-204ENST00000423058 A0A096LNI7 61 aa5.21□□□□□ -1.58
SCN1A-204ENST00000423058 IBA57-AS1B1ANH7 110 aa5.2□□□□□ -1.58
SCN1A-204ENST00000423058 CLEC2BQ92478 149 aa5.2□□□□□ -1.58
SCN1A-204ENST00000423058 ASPHD1Q5U4P2 390 aa5.2□□□□□ -1.58
SCN1A-204ENST00000423058 Q6ZUT4 128 aa5.2□□□□□ -1.58
SCN1A-204ENST00000423058 LRRK2Q5S007 2527 aa5.2□□□□□ -1.58
SCN1A-204ENST00000423058 SYCNQ0VAF6 134 aa5.2□□□□□ -1.58
SCN1A-204ENST00000423058 LINC00643Q86TS7 51 aa5.2□□□□□ -1.58
SCN1A-204ENST00000423058 ACACBO00763 2458 aa5.2□□□□□ -1.58
SCN1A-204ENST00000423058 TRAV23DV6A0A075B6W5 121 aa5.2□□□□□ -1.58
SCN1A-204ENST00000423058 Q6ZVQ6 151 aa5.2□□□□□ -1.58
SCN1A-204ENST00000423058 TDRG1Q3Y452 100 aa5.2□□□□□ -1.58
SCN1A-204ENST00000423058 WFDC11Q8NEX6 87 aa5.2□□□□□ -1.58
SCN1A-204ENST00000423058 C10orf25Q5T742 122 aa5.19□□□□□ -1.58
SCN1A-204ENST00000423058 IMUPQ9GZP8 106 aa5.19□□□□□ -1.58
SCN1A-204ENST00000423058 DEFB114Q30KQ6 69 aa5.19□□□□□ -1.58
SCN1A-204ENST00000423058 SPINK6Q6UWN8 80 aa5.19□□□□□ -1.58
SCN1A-204ENST00000423058 LY6LH3BQJ8 138 aa5.19□□□□□ -1.58
SCN1A-204ENST00000423058 COX17Q14061 63 aa5.19□□□□□ -1.58
SCN1A-204ENST00000423058 C1orf147Q96MC9 270 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-204ENST00000423058 RSPO1Q2MKA7 263 aaPredicted RBP5.19□□□□□ -1.58
SCN1A-204ENST00000423058 C20orf203Q8NBC4 194 aa5.19□□□□□ -1.58
SCN1A-204ENST00000423058 IGLV4-69A0A075B6H9 119 aa5.19□□□□□ -1.58
SCN1A-204ENST00000423058 FAM236DA0A1B0GTK5 79 aa5.19□□□□□ -1.58
SCN1A-204ENST00000423058 FAM236CP0DP71 79 aa5.19□□□□□ -1.58
SCN1A-204ENST00000423058 KRTAP27-1Q3LI81 207 aa5.19□□□□□ -1.58
SCN1A-204ENST00000423058 Q8N9L7 120 aa5.19□□□□□ -1.58
SCN1A-204ENST00000423058 TRBV6-8A0A0A6YYG3 113 aa5.19□□□□□ -1.58
SCN1A-204ENST00000423058 MUC7Q8TAX7 377 aa5.18□□□□□ -1.58
SCN1A-204ENST00000423058 NDUFC2-KCTD14E9PQ53 114 aa5.18□□□□□ -1.58
SCN1A-204ENST00000423058 G3V4G9 280 aa5.18□□□□□ -1.58
SCN1A-204ENST00000423058 Q8N7P7 452 aa5.18□□□□□ -1.58
SCN1A-204ENST00000423058 ODF3BA8MYP8 253 aa5.18□□□□□ -1.58
SCN1A-204ENST00000423058 M0R2N4 97 aa5.18□□□□□ -1.58
SCN1A-204ENST00000423058 RPL28P46779 137 aaKnown RBP5.18□□□□□ -1.58
SCN1A-204ENST00000423058 SPRNQ5BIV9 151 aa5.18□□□□□ -1.58
SCN1A-204ENST00000423058 IGLV2-18A0A075B6J9 118 aa5.18□□□□□ -1.58
SCN1A-204ENST00000423058 FAM240AA0A1B0GVK7 77 aa5.18□□□□□ -1.58
SCN1A-204ENST00000423058 PIK3CD-AS1Q5SR53 167 aa5.18□□□□□ -1.58
SCN1A-204ENST00000423058 ZNF843Q8N446 348 aa5.18□□□□□ -1.58
SCN1A-204ENST00000423058 TRBV6-4A0A1B0GX49 114 aa5.17□□□□□ -1.58
SCN1A-204ENST00000423058 LY6G6DO95868 133 aa5.17□□□□□ -1.58
SCN1A-204ENST00000423058 KPRPQ5T749 579 aaPredicted RBP5.17□□□□□ -1.58
SCN1A-204ENST00000423058 UNQ9165/PRO28630Q6UXU0 137 aa5.17□□□□□ -1.58
SCN1A-204ENST00000423058 Q6ZTI0 123 aa5.17□□□□□ -1.58
SCN1A-204ENST00000423058 IGF1P05019 195 aa5.17□□□□□ -1.58
SCN1A-204ENST00000423058 IGLV1-47P01700 117 aa5.17□□□□□ -1.58
SCN1A-204ENST00000423058 GPR179Q6PRD1 2367 aa5.17□□□□□ -1.58
SCN1A-204ENST00000423058 HRCT1Q6UXD1 115 aa5.17□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms