RNA–Protein interactions for RNA: ENST00000416538.5

UBXN4-203, Transcript of UBX domain protein 4, humanhuman

TSL 5

Gene UBXN4, Length 1,255 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBXN4-203ENST00000416538 GTSF1Q8WW33 167 aa9.78□□□□□ -0.84
UBXN4-203ENST00000416538 CHAC1Q9BUX1 264 aa9.78□□□□□ -0.84
UBXN4-203ENST00000416538 DPH3P1Q9H4G8 78 aa9.78□□□□□ -0.84
UBXN4-203ENST00000416538 RPP21Q9H633 154 aaKnown RBP9.78□□□□□ -0.84
UBXN4-203ENST00000416538 TRAV26-2A0A0B4J265 109 aa9.77□□□□□ -0.85
UBXN4-203ENST00000416538 XKRY2A2RUG3 117 aa9.77□□□□□ -0.85
UBXN4-203ENST00000416538 H7C1H1 209 aa9.77□□□□□ -0.85
UBXN4-203ENST00000416538 TRGC1P0CF51 173 aa9.77□□□□□ -0.85
UBXN4-203ENST00000416538 BLOC1S1P78537 153 aa9.77□□□□□ -0.85
UBXN4-203ENST00000416538 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.77□□□□□ -0.85
UBXN4-203ENST00000416538 IGLV10-54A0A075B6I4 117 aa9.76□□□□□ -0.85
UBXN4-203ENST00000416538 PKIAP61925 76 aa9.76□□□□□ -0.85
UBXN4-203ENST00000416538 PKHD1L1Q86WI1 4243 aa9.75□□□□□ -0.85
UBXN4-203ENST00000416538 PANO1I0J062 215 aa9.75□□□□□ -0.85
UBXN4-203ENST00000416538 FOXA3P55318 350 aaPredicted RBP9.75□□□□□ -0.85
UBXN4-203ENST00000416538 REG3AQ06141 175 aa9.75□□□□□ -0.85
UBXN4-203ENST00000416538 C14orf177Q52M58 125 aa9.75□□□□□ -0.85
UBXN4-203ENST00000416538 GATD1Q8NB37 220 aa9.75□□□□□ -0.85
UBXN4-203ENST00000416538 LYPD6BQ8NI32 183 aa9.75□□□□□ -0.85
UBXN4-203ENST00000416538 PGLYRP4Q96LB8 373 aa9.75□□□□□ -0.85
UBXN4-203ENST00000416538 TMEM243Q9BU79 118 aa9.75□□□□□ -0.85
UBXN4-203ENST00000416538 NIT2Q9NQR4 276 aa9.75□□□□□ -0.85
UBXN4-203ENST00000416538 PLA2G1BP04054 148 aaKnown RBP9.74□□□□□ -0.85
UBXN4-203ENST00000416538 WDR73Q6P4I2 378 aa9.74□□□□□ -0.85
UBXN4-203ENST00000416538 RPL39LQ96EH5 51 aaKnown RBP9.74□□□□□ -0.85
UBXN4-203ENST00000416538 LRP1Q07954 4544 aaKnown RBP9.74□□□□□ -0.85
UBXN4-203ENST00000416538 TWIST1Q15672 202 aa9.73□□□□□ -0.85
UBXN4-203ENST00000416538 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP9.73□□□□□ -0.85
UBXN4-203ENST00000416538 A0A1B0GUV1 79 aa9.72□□□□□ -0.85
UBXN4-203ENST00000416538 TMEM250H0YL14 139 aa9.72□□□□□ -0.85
UBXN4-203ENST00000416538 GAS8-AS1O95177 125 aa9.72□□□□□ -0.85
UBXN4-203ENST00000416538 AMTP48728 403 aa9.71□□□□□ -0.86
UBXN4-203ENST00000416538 C9orf163Q8N9P6 203 aa9.71□□□□□ -0.86
UBXN4-203ENST00000416538 SLPIP03973 132 aa9.7□□□□□ -0.86
UBXN4-203ENST00000416538 COTL1Q14019 142 aa9.7□□□□□ -0.86
UBXN4-203ENST00000416538 FAM231DQ6ZW35 169 aa9.7□□□□□ -0.86
UBXN4-203ENST00000416538 A0A1B0GVG6 124 aa9.69□□□□□ -0.86
UBXN4-203ENST00000416538 GATCO43716 136 aaKnown RBP9.69□□□□□ -0.86
UBXN4-203ENST00000416538 CEBPGP53567 150 aa9.69□□□□□ -0.86
UBXN4-203ENST00000416538 FAT3Q8TDW7 4589 aa9.69□□□□□ -0.86
UBXN4-203ENST00000416538 HNRNPA3P51991 378 aaKnown RBP9.68□□□□□ -0.86
UBXN4-203ENST00000416538 DGAT2L7PQ6IED9 249 aa9.68□□□□□ -0.86
UBXN4-203ENST00000416538 SDIM1Q6ZPB5 146 aa9.68□□□□□ -0.86
UBXN4-203ENST00000416538 C15orf56Q8N910 161 aa9.68□□□□□ -0.86
UBXN4-203ENST00000416538 EIF5A2Q9GZV4 153 aaKnown RBP9.68□□□□□ -0.86
UBXN4-203ENST00000416538 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.67□□□□□ -0.86
UBXN4-203ENST00000416538 IGKV2-29A2NJV5 120 aaPredicted RBP9.67□□□□□ -0.86
UBXN4-203ENST00000416538 KRTAP29-1A8MX34 341 aaPredicted RBP9.67□□□□□ -0.86
UBXN4-203ENST00000416538 CT83Q5H943 113 aa9.67□□□□□ -0.86
UBXN4-203ENST00000416538 LINC01551Q86U37 167 aa9.67□□□□□ -0.86
UBXN4-203ENST00000416538 TRAV8-4A0A0B4J246 113 aa9.66□□□□□ -0.86
UBXN4-203ENST00000416538 hDV102S1A0JD36 115 aa9.66□□□□□ -0.86
UBXN4-203ENST00000416538 SDHAF1A6NFY7 115 aa9.66□□□□□ -0.86
UBXN4-203ENST00000416538 UBE2L6O14933 153 aa9.66□□□□□ -0.86
UBXN4-203ENST00000416538 CNBPP62633 177 aaKnown RBP9.66□□□□□ -0.86
UBXN4-203ENST00000416538 SMIM7Q9BQ49 75 aa9.66□□□□□ -0.86
UBXN4-203ENST00000416538 IGKV3OR2-268A0A0C4DH90 116 aa9.65□□□□□ -0.86
UBXN4-203ENST00000416538 FAM231BA6NCW3 169 aa9.65□□□□□ -0.86
UBXN4-203ENST00000416538 A8MWL6 223 aa9.65□□□□□ -0.86
UBXN4-203ENST00000416538 SRP19P09132 144 aaKnown RBP9.65□□□□□ -0.86
UBXN4-203ENST00000416538 CHTF8P0CG12 524 aa9.65□□□□□ -0.86
UBXN4-203ENST00000416538 RPS10P46783 165 aaKnown RBP9.65□□□□□ -0.86
UBXN4-203ENST00000416538 CIRBPQ14011 172 aaKnown RBP9.65□□□□□ -0.86
UBXN4-203ENST00000416538 RNF185Q96GF1 192 aa9.65□□□□□ -0.86
UBXN4-203ENST00000416538 FAM210AQ96ND0 272 aa9.65□□□□□ -0.86
UBXN4-203ENST00000416538 GAGE12HA6NDE8 117 aa9.64□□□□□ -0.87
UBXN4-203ENST00000416538 NDUFS6O75380 124 aaKnown RBP9.64□□□□□ -0.87
UBXN4-203ENST00000416538 CLRN3Q8NCR9 226 aa9.64□□□□□ -0.87
UBXN4-203ENST00000416538 TRBV6-5A0A0K0K1A5 114 aa9.63□□□□□ -0.87
UBXN4-203ENST00000416538 HIGD1CA8MV81 97 aa9.63□□□□□ -0.87
UBXN4-203ENST00000416538 NCR2O95944 276 aa9.63□□□□□ -0.87
UBXN4-203ENST00000416538 TSHBP01222 138 aa9.63□□□□□ -0.87
UBXN4-203ENST00000416538 APCSP02743 223 aa9.63□□□□□ -0.87
UBXN4-203ENST00000416538 FGF6P10767 208 aa9.63□□□□□ -0.87
UBXN4-203ENST00000416538 SMIM15Q7Z3B0 74 aa9.63□□□□□ -0.87
UBXN4-203ENST00000416538 KRTAP4-8Q9BYQ9 185 aa9.63□□□□□ -0.87
UBXN4-203ENST00000416538 V9GYV3 84 aa9.63□□□□□ -0.87
UBXN4-203ENST00000416538 ZNF727A8MUV8 499 aa9.62□□□□□ -0.87
UBXN4-203ENST00000416538 C9JQL5 133 aa9.62□□□□□ -0.87
UBXN4-203ENST00000416538 EIF4EBP3O60516 100 aaPredicted RBP9.62□□□□□ -0.87
UBXN4-203ENST00000416538 RPL37AP61513 92 aaKnown RBP9.62□□□□□ -0.87
UBXN4-203ENST00000416538 TSKUQ8WUA8 353 aa9.62□□□□□ -0.87
UBXN4-203ENST00000416538 OSTCQ9NRP0 149 aa9.62□□□□□ -0.87
UBXN4-203ENST00000416538 TMEM242Q9NWH2 141 aa9.62□□□□□ -0.87
UBXN4-203ENST00000416538 ESDP10768 282 aa9.61□□□□□ -0.87
UBXN4-203ENST00000416538 HIGD2BQ4VC39 106 aa9.61□□□□□ -0.87
UBXN4-203ENST00000416538 RNASEKQ6P5S7 137 aaKnown RBP9.61□□□□□ -0.87
UBXN4-203ENST00000416538 AMN1Q8IY45 258 aa9.61□□□□□ -0.87
UBXN4-203ENST00000416538 CHCHD10Q8WYQ3 142 aaPredicted RBP9.61□□□□□ -0.87
UBXN4-203ENST00000416538 A0A1B0GUT8 65 aa9.6□□□□□ -0.87
UBXN4-203ENST00000416538 AMMECR1LQ6DCA0 310 aa9.6□□□□□ -0.87
UBXN4-203ENST00000416538 TEX261Q6UWH6 196 aa9.6□□□□□ -0.87
UBXN4-203ENST00000416538 SPACA4Q8TDM5 124 aa9.6□□□□□ -0.87
UBXN4-203ENST00000416538 ISOC2Q96AB3 205 aa9.6□□□□□ -0.87
UBXN4-203ENST00000416538 BORCS7Q96B45 105 aa9.6□□□□□ -0.87
UBXN4-203ENST00000416538 TMEM191AQ9H0A3 160 aa9.6□□□□□ -0.87
UBXN4-203ENST00000416538 SMKR1H3BMG3 65 aa9.59□□□□□ -0.87
UBXN4-203ENST00000416538 H7C423 109 aa9.59□□□□□ -0.87
UBXN4-203ENST00000416538 I3L3M4 83 aa9.59□□□□□ -0.87
UBXN4-203ENST00000416538 RAB4AP20338 218 aa9.59□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms