RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 GAGE1Q13065 139 aa4.67□□□□□ -1.66
VPS41-204ENST00000413141 GAGE4Q13068 117 aa4.67□□□□□ -1.66
VPS41-204ENST00000413141 GAGE5Q13069 117 aa4.67□□□□□ -1.66
VPS41-204ENST00000413141 GAGE13Q4V321 117 aa4.67□□□□□ -1.66
VPS41-204ENST00000413141 LINC00173Q6ZV60 143 aa4.67□□□□□ -1.66
VPS41-204ENST00000413141 ZNRF2Q8NHG8 242 aa4.67□□□□□ -1.66
VPS41-204ENST00000413141 DEFB104AQ8WTQ1 72 aa4.67□□□□□ -1.66
VPS41-204ENST00000413141 PHLDA1Q8WV24 401 aaPredicted RBP4.67□□□□□ -1.66
VPS41-204ENST00000413141 PRO0255Q9UI72 69 aa4.67□□□□□ -1.66
VPS41-204ENST00000413141 HHLA3Q9XRX5 114 aa4.67□□□□□ -1.66
VPS41-204ENST00000413141 MEGF8Q7Z7M0 2845 aa4.66□□□□□ -1.66
VPS41-204ENST00000413141 F5H768 121 aa4.66□□□□□ -1.66
VPS41-204ENST00000413141 SMIM6P0DI80 62 aa4.66□□□□□ -1.66
VPS41-204ENST00000413141 KRTDAPP60985 99 aa4.66□□□□□ -1.66
VPS41-204ENST00000413141 COTL1Q14019 142 aa4.66□□□□□ -1.66
VPS41-204ENST00000413141 C2orf66Q6UXQ4 117 aa4.66□□□□□ -1.66
VPS41-204ENST00000413141 Q6ZTC4 211 aa4.66□□□□□ -1.66
VPS41-204ENST00000413141 DAZ4Q86SG3 579 aaKnown RBP4.66□□□□□ -1.66
VPS41-204ENST00000413141 TOMM6Q96B49 74 aa4.66□□□□□ -1.66
VPS41-204ENST00000413141 VSIG2Q96IQ7 327 aa4.66□□□□□ -1.66
VPS41-204ENST00000413141 DAZ3Q9NR90 486 aaKnown RBP4.66□□□□□ -1.66
VPS41-204ENST00000413141 HSPB8Q9UJY1 196 aa4.66□□□□□ -1.66
VPS41-204ENST00000413141 TRAV26-1A0A087WT03 109 aa4.65□□□□□ -1.67
VPS41-204ENST00000413141 A0A0J9YY99 117 aa4.65□□□□□ -1.67
VPS41-204ENST00000413141 PAX4O43316 350 aa4.65□□□□□ -1.67
VPS41-204ENST00000413141 C3orf79P0CE67 100 aa4.65□□□□□ -1.67
VPS41-204ENST00000413141 GYPEP15421 78 aa4.65□□□□□ -1.67
VPS41-204ENST00000413141 HTN3P15516 51 aa4.65□□□□□ -1.67
VPS41-204ENST00000413141 NANOS2P60321 138 aaKnown RBP4.65□□□□□ -1.67
VPS41-204ENST00000413141 PYY3Q5JQD4 70 aa4.65□□□□□ -1.67
VPS41-204ENST00000413141 C20orf203Q8NBC4 194 aa4.65□□□□□ -1.67
VPS41-204ENST00000413141 C11orf45Q8TAV5 145 aa4.65□□□□□ -1.67
VPS41-204ENST00000413141 CHCHD7Q9BUK0 85 aa4.65□□□□□ -1.67
VPS41-204ENST00000413141 CYSLTR1Q9Y271 337 aa4.65□□□□□ -1.67
VPS41-204ENST00000413141 HUWE1Q7Z6Z7 4374 aaKnown RBP4.64□□□□□ -1.67
VPS41-204ENST00000413141 LINC01549A6NIU2 74 aa4.64□□□□□ -1.67
VPS41-204ENST00000413141 SYS1-DBNDD2H3BUS1 97 aa4.64□□□□□ -1.67
VPS41-204ENST00000413141 ATP5LO75964 103 aa4.64□□□□□ -1.67
VPS41-204ENST00000413141 G0S2P27469 103 aa4.64□□□□□ -1.67
VPS41-204ENST00000413141 RPL39P62891 51 aaKnown RBP4.64□□□□□ -1.67
VPS41-204ENST00000413141 DEFA6Q01524 100 aa4.64□□□□□ -1.67
VPS41-204ENST00000413141 JOSD1Q15040 202 aaPredicted RBP4.64□□□□□ -1.67
VPS41-204ENST00000413141 XP32Q5T750 250 aa4.64□□□□□ -1.67
VPS41-204ENST00000413141 NTM-AS1Q6ZSK4 140 aa4.64□□□□□ -1.67
VPS41-204ENST00000413141 SPATA12Q7Z6I5 190 aa4.64□□□□□ -1.67
VPS41-204ENST00000413141 Q8N976 141 aa4.64□□□□□ -1.67
VPS41-204ENST00000413141 IFI27L1Q96BM0 104 aa4.64□□□□□ -1.67
VPS41-204ENST00000413141 MAP1LC3CQ9BXW4 147 aa4.64□□□□□ -1.67
VPS41-204ENST00000413141 GTSF1LQ9H1H1 148 aa4.64□□□□□ -1.67
VPS41-204ENST00000413141 IGKV2D-29A0A075B6S2 120 aaPredicted RBP4.63□□□□□ -1.67
VPS41-204ENST00000413141 IGKV2-29A2NJV5 120 aaPredicted RBP4.63□□□□□ -1.67
VPS41-204ENST00000413141 H0Y8G0 127 aa4.63□□□□□ -1.67
VPS41-204ENST00000413141 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP4.63□□□□□ -1.67
VPS41-204ENST00000413141 NHLRC4P0CG21 123 aaPredicted RBP4.63□□□□□ -1.67
VPS41-204ENST00000413141 ERASQ7Z444 233 aa4.63□□□□□ -1.67
VPS41-204ENST00000413141 ATP6V0E2Q8NHE4 81 aa4.63□□□□□ -1.67
VPS41-204ENST00000413141 SCGB3A1Q96QR1 104 aa4.63□□□□□ -1.67
VPS41-204ENST00000413141 TIMM17AQ99595 171 aa4.63□□□□□ -1.67
VPS41-204ENST00000413141 ICOSQ9Y6W8 199 aa4.63□□□□□ -1.67
VPS41-204ENST00000413141 TRBV25-1A0A075B6N4 114 aa4.62□□□□□ -1.67
VPS41-204ENST00000413141 DEFB131BA0A096LNP1 70 aa4.62□□□□□ -1.67
VPS41-204ENST00000413141 A0A096LPF7 62 aa4.62□□□□□ -1.67
VPS41-204ENST00000413141 TRBV6-8A0A0A6YYG3 113 aa4.62□□□□□ -1.67
VPS41-204ENST00000413141 TRAV10A0A0B4J240 114 aa4.62□□□□□ -1.67
VPS41-204ENST00000413141 C20orf202A1L168 122 aa4.62□□□□□ -1.67
VPS41-204ENST00000413141 IGIPA6NJ69 53 aa4.62□□□□□ -1.67
VPS41-204ENST00000413141 H3BNG1 76 aa4.62□□□□□ -1.67
VPS41-204ENST00000413141 SCGB1D1O95968 90 aa4.62□□□□□ -1.67
VPS41-204ENST00000413141 TMEM97Q5BJF2 176 aa4.62□□□□□ -1.67
VPS41-204ENST00000413141 LINC01545Q5VT33 79 aa4.62□□□□□ -1.67
VPS41-204ENST00000413141 CDPF1Q6NVV7 123 aa4.62□□□□□ -1.67
VPS41-204ENST00000413141 PET117Q6UWS5 81 aa4.62□□□□□ -1.67
VPS41-204ENST00000413141 Q6ZN92 141 aa4.62□□□□□ -1.67
VPS41-204ENST00000413141 LINC00518Q8N0U6 118 aa4.62□□□□□ -1.67
VPS41-204ENST00000413141 BAALCQ8WXS3 180 aa4.62□□□□□ -1.67
VPS41-204ENST00000413141 TMEM141Q96I45 108 aa4.62□□□□□ -1.67
VPS41-204ENST00000413141 C12orf57Q99622 126 aa4.62□□□□□ -1.67
VPS41-204ENST00000413141 SPANXA1Q9NS26 97 aa4.62□□□□□ -1.67
VPS41-204ENST00000413141 UBE2D4Q9Y2X8 147 aa4.62□□□□□ -1.67
VPS41-204ENST00000413141 PYGO1Q9Y3Y4 419 aa4.62□□□□□ -1.67
VPS41-204ENST00000413141 DNAH9Q9NYC9 4486 aa4.62□□□□□ -1.67
VPS41-204ENST00000413141 PRKDCP78527 4128 aaKnown RBP4.61□□□□□ -1.67
VPS41-204ENST00000413141 IGLV4-3A0A075B6K6 122 aa4.61□□□□□ -1.67
VPS41-204ENST00000413141 TRAV12-1A0A0B4J245 112 aa4.61□□□□□ -1.67
VPS41-204ENST00000413141 NPSP0C0P6 89 aa4.61□□□□□ -1.67
VPS41-204ENST00000413141 ODF1Q14990 250 aa4.61□□□□□ -1.67
VPS41-204ENST00000413141 MRPL23Q16540 153 aaKnown RBP4.61□□□□□ -1.67
VPS41-204ENST00000413141 LGALS9CQ6DKI2 356 aa4.61□□□□□ -1.67
VPS41-204ENST00000413141 SH2D6Q7Z4S9 175 aa4.61□□□□□ -1.67
VPS41-204ENST00000413141 TMEM243Q9BU79 118 aa4.61□□□□□ -1.67
VPS41-204ENST00000413141 STAB2Q8WWQ8 2551 aa4.6□□□□□ -1.67
VPS41-204ENST00000413141 COL7A1Q02388 2944 aa4.6□□□□□ -1.67
VPS41-204ENST00000413141 H7C423 109 aa4.6□□□□□ -1.67
VPS41-204ENST00000413141 UBE2L6O14933 153 aa4.6□□□□□ -1.67
VPS41-204ENST00000413141 GHRHP01286 108 aa4.6□□□□□ -1.67
VPS41-204ENST00000413141 PRSS1P07477 247 aa4.6□□□□□ -1.67
VPS41-204ENST00000413141 FGF6P10767 208 aa4.6□□□□□ -1.67
VPS41-204ENST00000413141 CEMP1Q6PRD7 247 aaPredicted RBP4.6□□□□□ -1.67
VPS41-204ENST00000413141 TEX43Q6ZNM6 134 aa4.6□□□□□ -1.67
VPS41-204ENST00000413141 Q6ZUT4 128 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms