RNA–Protein interactions for RNA: ENST00000412685.6

HCG18-233, Transcript of HLA complex group 18, human

TSL 2 BASIC

Gene HCG18, Length 2,552 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HCG18-233	ENST00000412685	MRPL16	Q9NX20	251 aa	Known RBP	11.97	□□□□□ -0.49
HCG18-233	ENST00000412685	SAMD5	Q5TGI4	173 aa		11.96	□□□□□ -0.49
HCG18-233	ENST00000412685	BEAN1	Q3B7T3	259 aa		11.96	□□□□□ -0.5
HCG18-233	ENST00000412685		Q9UF83	564 aa		11.96	□□□□□ -0.5
HCG18-233	ENST00000412685	RHOD	O00212	210 aa		11.95	□□□□□ -0.5
HCG18-233	ENST00000412685	SCGB1D4	Q6XE38	83 aa		11.95	□□□□□ -0.5
HCG18-233	ENST00000412685	NFE4	Q86UQ8	179 aa		11.95	□□□□□ -0.5
HCG18-233	ENST00000412685	ANK3	Q12955	4377 aa	Known RBP	11.95	□□□□□ -0.5
HCG18-233	ENST00000412685	IGLV4-3	A0A075B6K6	122 aa		11.95	□□□□□ -0.5
HCG18-233	ENST00000412685	FABP2	P12104	132 aa		11.95	□□□□□ -0.5
HCG18-233	ENST00000412685	AZU1	P20160	251 aa		11.94	□□□□□ -0.5
HCG18-233	ENST00000412685	PLEKHB2	Q96CS7	222 aa		11.94	□□□□□ -0.5
HCG18-233	ENST00000412685	SPCS1	Q9Y6A9	102 aa		11.94	□□□□□ -0.5
HCG18-233	ENST00000412685	C1orf158	Q8N1D5	194 aa		11.94	□□□□□ -0.5
HCG18-233	ENST00000412685	IGHV3OR16-12	A0A075B7B8	117 aa		11.93	□□□□□ -0.5
HCG18-233	ENST00000412685	C12orf74	Q32Q52	190 aa		11.93	□□□□□ -0.5
HCG18-233	ENST00000412685	VCX2	Q9H322	139 aa		11.93	□□□□□ -0.5
HCG18-233	ENST00000412685	IGHV3-53	P01767	116 aa		11.93	□□□□□ -0.5
HCG18-233	ENST00000412685	SETX	Q7Z333	2677 aa	Known RBP	11.93	□□□□□ -0.5
HCG18-233	ENST00000412685	JMJD1C	Q15652	2540 aa		11.93	□□□□□ -0.5
HCG18-233	ENST00000412685	TSPEAR-AS2	P59090	65 aa		11.92	□□□□□ -0.5
HCG18-233	ENST00000412685	ZNF418	Q8TF45	676 aa	Predicted RBP	11.92	□□□□□ -0.5
HCG18-233	ENST00000412685	PYGO1	Q9Y3Y4	419 aa		11.92	□□□□□ -0.5
HCG18-233	ENST00000412685	FASN	P49327	2511 aa	Known RBP	11.92	□□□□□ -0.5
HCG18-233	ENST00000412685	RS1	O15537	224 aa		11.92	□□□□□ -0.5
HCG18-233	ENST00000412685	CIDEA	O60543	219 aa		11.91	□□□□□ -0.5
HCG18-233	ENST00000412685	OR5A1	Q8NGJ0	315 aa		11.91	□□□□□ -0.5
HCG18-233	ENST00000412685	HILS1	P60008	231 aa		11.91	□□□□□ -0.5
HCG18-233	ENST00000412685		A0A0J9YXV3	536 aa		11.9	□□□□□ -0.5
HCG18-233	ENST00000412685		A0A1B0GWB2	263 aa		11.9	□□□□□ -0.5
HCG18-233	ENST00000412685	IGLL5	B9A064	214 aa		11.9	□□□□□ -0.5
HCG18-233	ENST00000412685	IL17D	Q8TAD2	202 aa		11.9	□□□□□ -0.5
HCG18-233	ENST00000412685	FAM104A	Q969W3	186 aa		11.9	□□□□□ -0.5
HCG18-233	ENST00000412685		A0A0J9YY99	117 aa		11.89	□□□□□ -0.51
HCG18-233	ENST00000412685	TMEM223	A0PJW6	202 aa		11.89	□□□□□ -0.51
HCG18-233	ENST00000412685		J3QQQ9	107 aa		11.89	□□□□□ -0.51
HCG18-233	ENST00000412685	ZNF22	P17026	224 aa	Predicted RBP	11.89	□□□□□ -0.51
HCG18-233	ENST00000412685	SRSF9	Q13242	221 aa	Known RBP eCLIP	11.89	□□□□□ -0.51	6e-7	■■□□□ 13.7
HCG18-233	ENST00000412685	DNAJC30	Q96LL9	226 aa		11.89	□□□□□ -0.51
HCG18-233	ENST00000412685	NOTCH3	Q9UM47	2321 aa		11.89	□□□□□ -0.51
HCG18-233	ENST00000412685	CEMP1	Q6PRD7	247 aa	Predicted RBP	11.89	□□□□□ -0.51
HCG18-233	ENST00000412685	AMELX	Q99217	191 aa		11.89	□□□□□ -0.51
HCG18-233	ENST00000412685	CHCHD7	Q9BUK0	85 aa		11.89	□□□□□ -0.51
HCG18-233	ENST00000412685	RPL24	P83731	157 aa	Known RBP	11.88	□□□□□ -0.51
HCG18-233	ENST00000412685	HIVEP2	P31629	2446 aa		11.88	□□□□□ -0.51
HCG18-233	ENST00000412685	TRGV1	A0A0A0MS02	117 aa		11.88	□□□□□ -0.51
HCG18-233	ENST00000412685	LGALS3	P17931	250 aa	Known RBP	11.88	□□□□□ -0.51
HCG18-233	ENST00000412685	ZNF479	Q96JC4	524 aa		11.88	□□□□□ -0.51
HCG18-233	ENST00000412685	ADARB2-AS1	A8MUL3	147 aa		11.87	□□□□□ -0.51
HCG18-233	ENST00000412685	IGLV1-51	P01701	117 aa		11.87	□□□□□ -0.51
HCG18-233	ENST00000412685	CRYBA4	P53673	196 aa		11.87	□□□□□ -0.51
HCG18-233	ENST00000412685	CMC4	P56277	68 aa	Predicted RBP	11.87	□□□□□ -0.51
HCG18-233	ENST00000412685	IGHV3-38	A0A0C4DH36	116 aa		11.87	□□□□□ -0.51
HCG18-233	ENST00000412685	TEX48	A0A1B0GUV7	120 aa		11.86	□□□□□ -0.51
HCG18-233	ENST00000412685		A6NJY4	79 aa		11.86	□□□□□ -0.51
HCG18-233	ENST00000412685	LEPROT	O15243	131 aa		11.86	□□□□□ -0.51
HCG18-233	ENST00000412685	SMR3A	Q99954	134 aa		11.86	□□□□□ -0.51
HCG18-233	ENST00000412685	SPANXA1	Q9NS26	97 aa		11.86	□□□□□ -0.51
HCG18-233	ENST00000412685	NDUFA7	O95182	113 aa		11.86	□□□□□ -0.51
HCG18-233	ENST00000412685	TMEM263	Q8WUH6	116 aa	Known RBP	11.86	□□□□□ -0.51
HCG18-233	ENST00000412685	WFDC10A	Q9H1F0	79 aa		11.86	□□□□□ -0.51
HCG18-233	ENST00000412685	UBE2D4	Q9Y2X8	147 aa		11.86	□□□□□ -0.51
HCG18-233	ENST00000412685	GCN1	Q92616	2671 aa	Known RBP	11.86	□□□□□ -0.51
HCG18-233	ENST00000412685	IGKV2D-29	A0A075B6S2	120 aa	Predicted RBP	11.85	□□□□□ -0.51
HCG18-233	ENST00000412685	IGKV2-29	A2NJV5	120 aa	Predicted RBP	11.85	□□□□□ -0.51
HCG18-233	ENST00000412685	GIG44	P09565	113 aa	Predicted RBP	11.85	□□□□□ -0.51
HCG18-233	ENST00000412685	RRN3P1	Q2M238	152 aa		11.85	□□□□□ -0.51
HCG18-233	ENST00000412685	RNASE13	Q5GAN3	156 aa	Known RBP	11.85	□□□□□ -0.51
HCG18-233	ENST00000412685	IGHV3-64	A0A075B6Q5	118 aa		11.85	□□□□□ -0.51
HCG18-233	ENST00000412685	MRPS36	P82909	103 aa	Known RBP	11.85	□□□□□ -0.51
HCG18-233	ENST00000412685	SLC25A29	Q8N8R3	303 aa		11.85	□□□□□ -0.51
HCG18-233	ENST00000412685	SPANXB1	Q9NS25	103 aa	Predicted RBP	11.85	□□□□□ -0.51
HCG18-233	ENST00000412685		Q6ZTI0	123 aa		11.84	□□□□□ -0.51
HCG18-233	ENST00000412685	FAM110A	Q9BQ89	295 aa		11.84	□□□□□ -0.51
HCG18-233	ENST00000412685	HECTD1	Q9ULT8	2610 aa		11.84	□□□□□ -0.51
HCG18-233	ENST00000412685	C19orf73	Q9NVV2	129 aa		11.84	□□□□□ -0.51
HCG18-233	ENST00000412685	UBE2D1	P51668	147 aa		11.83	□□□□□ -0.52
HCG18-233	ENST00000412685	GTSF1L	Q9H1H1	148 aa		11.83	□□□□□ -0.52
HCG18-233	ENST00000412685	IGHV3-30	P01768	117 aa		11.82	□□□□□ -0.52
HCG18-233	ENST00000412685	IGHV3-30-5	P0DP03	117 aa		11.82	□□□□□ -0.52
HCG18-233	ENST00000412685	RPL35A	P18077	110 aa	Known RBP	11.82	□□□□□ -0.52
HCG18-233	ENST00000412685		Q6ZUT4	128 aa		11.82	□□□□□ -0.52
HCG18-233	ENST00000412685	NOTCH2	Q04721	2471 aa		11.82	□□□□□ -0.52
HCG18-233	ENST00000412685	NOP10	Q9NPE3	64 aa	Known RBP	11.81	□□□□□ -0.52
HCG18-233	ENST00000412685	SMAGP	Q0VAQ4	97 aa		11.81	□□□□□ -0.52
HCG18-233	ENST00000412685	PGPEP1	Q9NXJ5	209 aa		11.81	□□□□□ -0.52
HCG18-233	ENST00000412685	TRAV4	A0A0B4J268	109 aa		11.8	□□□□□ -0.52
HCG18-233	ENST00000412685	TIMM21	Q9BVV7	248 aa		11.8	□□□□□ -0.52
HCG18-233	ENST00000412685		K7EQD1	137 aa		11.8	□□□□□ -0.52
HCG18-233	ENST00000412685	IGHV3-30-3	P0DP02	117 aa		11.8	□□□□□ -0.52
HCG18-233	ENST00000412685	DAZ2	Q13117	558 aa	Known RBP	11.8	□□□□□ -0.52
HCG18-233	ENST00000412685	TRBV10-1	A0A0K0K1A3	114 aa		11.79	□□□□□ -0.52
HCG18-233	ENST00000412685	TINCR	A0A1B0GVN0	87 aa		11.79	□□□□□ -0.52
HCG18-233	ENST00000412685	C16orf74	Q96GX8	76 aa		11.79	□□□□□ -0.52
HCG18-233	ENST00000412685	PLAC8L1	A1L4L8	177 aa		11.78	□□□□□ -0.52
HCG18-233	ENST00000412685	APOM	O95445	188 aa		11.78	□□□□□ -0.52
HCG18-233	ENST00000412685	RPL36A	P83881	106 aa	Known RBP	11.78	□□□□□ -0.52
HCG18-233	ENST00000412685	RPL36AL	Q969Q0	106 aa	Known RBP	11.78	□□□□□ -0.52
HCG18-233	ENST00000412685	SIGMAR1	Q99720	223 aa		11.78	□□□□□ -0.52
HCG18-233	ENST00000412685	C1QTNF4	Q9BXJ3	329 aa		11.78	□□□□□ -0.52

Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms