RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 ZNF138P52744 262 aa4.4□□□□□ -1.7
USP40-202ENST00000409945 CRYBA4P53673 196 aa4.4□□□□□ -1.7
USP40-202ENST00000409945 TMEM183BQ1AE95 376 aa4.4□□□□□ -1.7
USP40-202ENST00000409945 C12orf74Q32Q52 190 aa4.4□□□□□ -1.7
USP40-202ENST00000409945 DNLZQ5SXM8 178 aa4.4□□□□□ -1.7
USP40-202ENST00000409945 IBA57Q5T440 356 aaKnown RBP4.4□□□□□ -1.7
USP40-202ENST00000409945 FAM231DQ6ZW35 169 aa4.4□□□□□ -1.7
USP40-202ENST00000409945 UBE2DNLQ8IWF7 75 aa4.4□□□□□ -1.7
USP40-202ENST00000409945 Q9H3A6 140 aa4.4□□□□□ -1.7
USP40-202ENST00000409945 OTORQ9NRC9 128 aa4.4□□□□□ -1.7
USP40-202ENST00000409945 CELA1Q9UNI1 258 aa4.4□□□□□ -1.7
USP40-202ENST00000409945 LENEPQ9Y5L5 61 aa4.4□□□□□ -1.7
USP40-202ENST00000409945 TRAPPC1Q9Y5R8 145 aa4.4□□□□□ -1.7
USP40-202ENST00000409945 V9GYV3 84 aa4.4□□□□□ -1.7
USP40-202ENST00000409945 STARD9Q9P2P6 4700 aa4.4□□□□□ -1.7
USP40-202ENST00000409945 IGLV2-8P01709 118 aa4.4□□□□□ -1.71
USP40-202ENST00000409945 ATP5G1P05496 136 aa4.4□□□□□ -1.71
USP40-202ENST00000409945 CT45A10P0DMU9 189 aa4.4□□□□□ -1.71
USP40-202ENST00000409945 DEFB130BP0DP73 79 aa4.4□□□□□ -1.71
USP40-202ENST00000409945 DEFB130AP0DP74 79 aa4.4□□□□□ -1.71
USP40-202ENST00000409945 MGST1P10620 155 aaKnown RBP4.4□□□□□ -1.71
USP40-202ENST00000409945 RNASE4P34096 147 aaKnown RBP4.4□□□□□ -1.71
USP40-202ENST00000409945 RPL13AP40429 203 aaKnown RBP4.4□□□□□ -1.71
USP40-202ENST00000409945 UBE2G1P62253 170 aa4.4□□□□□ -1.71
USP40-202ENST00000409945 BAGE2Q86Y30 109 aa4.4□□□□□ -1.71
USP40-202ENST00000409945 C15orf53Q8NAA6 179 aa4.4□□□□□ -1.71
USP40-202ENST00000409945 FMC1Q96HJ9 113 aa4.4□□□□□ -1.71
USP40-202ENST00000409945 EPDR1Q9UM22 224 aa4.4□□□□□ -1.71
USP40-202ENST00000409945 KLF12Q9Y4X4 402 aa4.4□□□□□ -1.71
USP40-202ENST00000409945 A0A1B0GV72 72 aa4.39□□□□□ -1.71
USP40-202ENST00000409945 PGPA6NDG6 321 aa4.39□□□□□ -1.71
USP40-202ENST00000409945 OR5I1Q13606 314 aa4.39□□□□□ -1.71
USP40-202ENST00000409945 DYNC2H1Q8NCM8 4307 aaKnown RBP4.39□□□□□ -1.71
USP40-202ENST00000409945 GNB1LQ9BYB4 327 aa4.39□□□□□ -1.71
USP40-202ENST00000409945 NIT2Q9NQR4 276 aa4.39□□□□□ -1.71
USP40-202ENST00000409945 ZNF492Q9P255 531 aa4.39□□□□□ -1.71
USP40-202ENST00000409945 IGKV2-40A0A087WW87 121 aaPredicted RBP4.38□□□□□ -1.71
USP40-202ENST00000409945 SMIM27A0A1W2PRY6 76 aa4.38□□□□□ -1.71
USP40-202ENST00000409945 F5H768 121 aa4.38□□□□□ -1.71
USP40-202ENST00000409945 IGKV2D-40P01614 121 aaPredicted RBP4.38□□□□□ -1.71
USP40-202ENST00000409945 ORM1P02763 201 aa4.38□□□□□ -1.71
USP40-202ENST00000409945 LINC00614P0C842 121 aa4.38□□□□□ -1.71
USP40-202ENST00000409945 FABP4P15090 132 aa4.38□□□□□ -1.71
USP40-202ENST00000409945 CRISP2P16562 243 aa4.38□□□□□ -1.71
USP40-202ENST00000409945 ERCC8Q13216 396 aa4.38□□□□□ -1.71
USP40-202ENST00000409945 RASL11AQ6T310 242 aa4.38□□□□□ -1.71
USP40-202ENST00000409945 OR10D4PQ8NGN7 298 aa4.38□□□□□ -1.71
USP40-202ENST00000409945 TYMSOSQ8TAI1 123 aa4.38□□□□□ -1.71
USP40-202ENST00000409945 GTSF1Q8WW33 167 aa4.38□□□□□ -1.71
USP40-202ENST00000409945 HIST1H2BLQ99880 126 aa4.38□□□□□ -1.71
USP40-202ENST00000409945 AGPAT4-IT1Q9H0P7 198 aa4.38□□□□□ -1.71
USP40-202ENST00000409945 RNASE7Q9H1E1 156 aaKnown RBP4.38□□□□□ -1.71
USP40-202ENST00000409945 NOP10Q9NPE3 64 aaKnown RBP4.38□□□□□ -1.71
USP40-202ENST00000409945 APLNQ9ULZ1 77 aa4.38□□□□□ -1.71
USP40-202ENST00000409945 TRGV2A0A075B6R0 118 aa4.38□□□□□ -1.71
USP40-202ENST00000409945 TRBV6-1A0A0K0K1D8 114 aa4.38□□□□□ -1.71
USP40-202ENST00000409945 A0A1B0GV90 55 aa4.38□□□□□ -1.71
USP40-202ENST00000409945 KLLNB2CW77 178 aa4.38□□□□□ -1.71
USP40-202ENST00000409945 LTAP01374 205 aa4.38□□□□□ -1.71
USP40-202ENST00000409945 HLA-DQA1P01909 254 aa4.38□□□□□ -1.71
USP40-202ENST00000409945 TCRAP04437 139 aa4.38□□□□□ -1.71
USP40-202ENST00000409945 DSCR10P59022 87 aa4.38□□□□□ -1.71
USP40-202ENST00000409945 PYY3Q5JQD4 70 aa4.38□□□□□ -1.71
USP40-202ENST00000409945 LYSTQ99698 3801 aa4.38□□□□□ -1.71
USP40-202ENST00000409945 LINC00467Q9BRT7 94 aa4.38□□□□□ -1.71
USP40-202ENST00000409945 ALMS1Q8TCU4 4167 aa4.37□□□□□ -1.71
USP40-202ENST00000409945 IGHV1OR15-1A0A075B7D0 117 aa4.37□□□□□ -1.71
USP40-202ENST00000409945 PRB4P10163 310 aaPredicted RBP4.37□□□□□ -1.71
USP40-202ENST00000409945 AZU1P20160 251 aa4.37□□□□□ -1.71
USP40-202ENST00000409945 DAZ2Q13117 558 aaKnown RBP4.37□□□□□ -1.71
USP40-202ENST00000409945 PDZD11Q5EBL8 140 aa4.37□□□□□ -1.71
USP40-202ENST00000409945 GOLT1AQ6ZVE7 132 aa4.37□□□□□ -1.71
USP40-202ENST00000409945 ATP5L2Q7Z4Y8 100 aa4.37□□□□□ -1.71
USP40-202ENST00000409945 KCNS1Q96KK3 526 aa4.37□□□□□ -1.71
USP40-202ENST00000409945 NAT8BQ9UHF3 227 aa4.37□□□□□ -1.71
USP40-202ENST00000409945 TRAV21A0A0B4J279 112 aa4.36□□□□□ -1.71
USP40-202ENST00000409945 FAM231BA6NCW3 169 aa4.36□□□□□ -1.71
USP40-202ENST00000409945 A8MWL6 223 aa4.36□□□□□ -1.71
USP40-202ENST00000409945 ATP5LO75964 103 aa4.36□□□□□ -1.71
USP40-202ENST00000409945 CCL18P55774 89 aa4.36□□□□□ -1.71
USP40-202ENST00000409945 GNG5P63218 68 aa4.36□□□□□ -1.71
USP40-202ENST00000409945 TSKUQ8WUA8 353 aa4.36□□□□□ -1.71
USP40-202ENST00000409945 RYR3Q15413 4870 aa4.36□□□□□ -1.71
USP40-202ENST00000409945 TRGV1A0A0A0MS02 117 aa4.36□□□□□ -1.71
USP40-202ENST00000409945 P01737 135 aa4.36□□□□□ -1.71
USP40-202ENST00000409945 ESDP10768 282 aa4.36□□□□□ -1.71
USP40-202ENST00000409945 Q0VG73 95 aa4.36□□□□□ -1.71
USP40-202ENST00000409945 JOSD1Q15040 202 aaPredicted RBP4.36□□□□□ -1.71
USP40-202ENST00000409945 LGALS9BQ3B8N2 356 aa4.36□□□□□ -1.71
USP40-202ENST00000409945 Q86TA4 180 aa4.36□□□□□ -1.71
USP40-202ENST00000409945 TMEM75Q8N9X5 138 aa4.36□□□□□ -1.71
USP40-202ENST00000409945 Q8TAT8 98 aa4.36□□□□□ -1.71
USP40-202ENST00000409945 FAM19A4Q96LR4 140 aa4.36□□□□□ -1.71
USP40-202ENST00000409945 RPP21Q9H633 154 aaKnown RBP4.36□□□□□ -1.71
USP40-202ENST00000409945 ZFP30Q9Y2G7 519 aa4.36□□□□□ -1.71
USP40-202ENST00000409945 PLECQ15149 4684 aaKnown RBP4.36□□□□□ -1.71
USP40-202ENST00000409945 SACSQ9NZJ4 4579 aa4.35□□□□□ -1.71
USP40-202ENST00000409945 ZNF324O75467 553 aaPredicted RBP4.35□□□□□ -1.71
USP40-202ENST00000409945 TCL1AP56279 114 aa4.35□□□□□ -1.71
USP40-202ENST00000409945 OR10J3Q5JRS4 329 aa4.35□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms