RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 NIT2Q9NQR4 276 aa6.32□□□□□ -1.4
VPS53-203ENST00000401468 TRAV26-2A0A0B4J265 109 aa6.31□□□□□ -1.4
VPS53-203ENST00000401468 A0A1B0GVY2 172 aa6.31□□□□□ -1.4
VPS53-203ENST00000401468 F5H697 171 aa6.31□□□□□ -1.4
VPS53-203ENST00000401468 GAS8-AS1O95177 125 aa6.31□□□□□ -1.4
VPS53-203ENST00000401468 PPBPP02775 128 aa6.31□□□□□ -1.4
VPS53-203ENST00000401468 MGPP08493 103 aa6.31□□□□□ -1.4
VPS53-203ENST00000401468 NEGR1Q7Z3B1 354 aa6.31□□□□□ -1.4
VPS53-203ENST00000401468 NRACQ8N912 160 aa6.31□□□□□ -1.4
VPS53-203ENST00000401468 TGIF2-C20orf24A0A0A6YYL0 155 aa6.3□□□□□ -1.4
VPS53-203ENST00000401468 PRSS47A8MTI9 375 aa6.3□□□□□ -1.4
VPS53-203ENST00000401468 PHOX2AO14813 284 aa6.3□□□□□ -1.4
VPS53-203ENST00000401468 PPP1R17O96001 155 aa6.3□□□□□ -1.4
VPS53-203ENST00000401468 HLA-DQA1P01909 254 aa6.3□□□□□ -1.4
VPS53-203ENST00000401468 MT-ND6P03923 174 aa6.3□□□□□ -1.4
VPS53-203ENST00000401468 SRIP30626 198 aa6.3□□□□□ -1.4
VPS53-203ENST00000401468 RPL32P62910 135 aaKnown RBP6.3□□□□□ -1.4
VPS53-203ENST00000401468 RPL36AP83881 106 aaKnown RBP6.3□□□□□ -1.4
VPS53-203ENST00000401468 DAZ4Q86SG3 579 aaKnown RBP6.3□□□□□ -1.4
VPS53-203ENST00000401468 CBLN2Q8IUK8 224 aa6.3□□□□□ -1.4
VPS53-203ENST00000401468 RPL36ALQ969Q0 106 aaKnown RBP6.3□□□□□ -1.4
VPS53-203ENST00000401468 UPK3BQ9BT76 320 aa6.3□□□□□ -1.4
VPS53-203ENST00000401468 DAZ3Q9NR90 486 aaKnown RBP6.3□□□□□ -1.4
VPS53-203ENST00000401468 C9orf118A6NHY6 69 aa6.29□□□□□ -1.4
VPS53-203ENST00000401468 RPS10P46783 165 aaKnown RBP6.29□□□□□ -1.4
VPS53-203ENST00000401468 POLR2KP53803 58 aaKnown RBP6.29□□□□□ -1.4
VPS53-203ENST00000401468 ESRGQ1W209 222 aa6.29□□□□□ -1.4
VPS53-203ENST00000401468 LYPD5Q6UWN5 251 aa6.29□□□□□ -1.4
VPS53-203ENST00000401468 ZNRF2Q8NHG8 242 aa6.29□□□□□ -1.4
VPS53-203ENST00000401468 RPL39LQ96EH5 51 aaKnown RBP6.29□□□□□ -1.4
VPS53-203ENST00000401468 GTSF1LQ9H1H1 148 aa6.29□□□□□ -1.4
VPS53-203ENST00000401468 LAMTOR2Q9Y2Q5 125 aa6.29□□□□□ -1.4
VPS53-203ENST00000401468 TRBV27A0A0K0K1C4 114 aa6.28□□□□□ -1.4
VPS53-203ENST00000401468 GAGE12JA6NER3 117 aa6.28□□□□□ -1.4
VPS53-203ENST00000401468 COLCA2A8K830 154 aa6.28□□□□□ -1.4
VPS53-203ENST00000401468 GAGE1Q13065 139 aa6.28□□□□□ -1.4
VPS53-203ENST00000401468 GAGE4Q13068 117 aa6.28□□□□□ -1.4
VPS53-203ENST00000401468 GAGE5Q13069 117 aa6.28□□□□□ -1.4
VPS53-203ENST00000401468 GAGE13Q4V321 117 aa6.28□□□□□ -1.4
VPS53-203ENST00000401468 ORMDL3Q8N138 153 aa6.28□□□□□ -1.4
VPS53-203ENST00000401468 ATP6V0E2Q8NHE4 81 aa6.28□□□□□ -1.4
VPS53-203ENST00000401468 C20orf78Q9BR46 151 aa6.28□□□□□ -1.4
VPS53-203ENST00000401468 MRPS16Q9Y3D3 137 aaKnown RBP6.28□□□□□ -1.4
VPS53-203ENST00000401468 LINC00588Q9Y4M8 146 aa6.28□□□□□ -1.4
VPS53-203ENST00000401468 SDHAF1A6NFY7 115 aa6.27□□□□□ -1.41
VPS53-203ENST00000401468 D6R8Y8 96 aa6.27□□□□□ -1.41
VPS53-203ENST00000401468 SMKR1H3BMG3 65 aa6.27□□□□□ -1.41
VPS53-203ENST00000401468 NCR2O95944 276 aa6.27□□□□□ -1.41
VPS53-203ENST00000401468 CKS2P33552 79 aa6.27□□□□□ -1.41
VPS53-203ENST00000401468 FUSP35637 526 aaKnown RBP eCLIP6.27□□□□□ -1.41
VPS53-203ENST00000401468 SUMO2P61956 95 aaKnown RBP6.27□□□□□ -1.41
VPS53-203ENST00000401468 TMEM97Q5BJF2 176 aa6.27□□□□□ -1.41
VPS53-203ENST00000401468 OR10J3Q5JRS4 329 aa6.27□□□□□ -1.41
VPS53-203ENST00000401468 LELP1Q5T871 98 aa6.27□□□□□ -1.41
VPS53-203ENST00000401468 Q6ZR54 194 aa6.27□□□□□ -1.41
VPS53-203ENST00000401468 TMEM70Q9BUB7 260 aa6.27□□□□□ -1.41
VPS53-203ENST00000401468 TNFRSF18Q9Y5U5 241 aa6.27□□□□□ -1.41
VPS53-203ENST00000401468 SCO1O75880 301 aa6.26□□□□□ -1.41
VPS53-203ENST00000401468 TNFRSF6BO95407 300 aa6.26□□□□□ -1.41
VPS53-203ENST00000401468 NPYP01303 97 aa6.26□□□□□ -1.41
VPS53-203ENST00000401468 APCSP02743 223 aa6.26□□□□□ -1.41
VPS53-203ENST00000401468 CCL18P55774 89 aa6.26□□□□□ -1.41
VPS53-203ENST00000401468 NTM-AS1Q6ZSK4 140 aa6.26□□□□□ -1.41
VPS53-203ENST00000401468 PRELID3AQ96N28 172 aa6.26□□□□□ -1.41
VPS53-203ENST00000401468 TRBV6-8A0A0A6YYG3 113 aa6.25□□□□□ -1.41
VPS53-203ENST00000401468 LINC01546A6NGU7 62 aa6.25□□□□□ -1.41
VPS53-203ENST00000401468 IQCJQ1A5X6 159 aa6.25□□□□□ -1.41
VPS53-203ENST00000401468 C1orf134Q5TEV5 83 aa6.25□□□□□ -1.41
VPS53-203ENST00000401468 LINC00336Q6ZUF6 198 aa6.25□□□□□ -1.41
VPS53-203ENST00000401468 ALKBH7Q9BT30 221 aaPredicted RBP6.25□□□□□ -1.41
VPS53-203ENST00000401468 KRTAP1-5Q9BYS1 174 aa6.25□□□□□ -1.41
VPS53-203ENST00000401468 ST20Q9HBF5 79 aa6.25□□□□□ -1.41
VPS53-203ENST00000401468 I3L3M4 83 aa6.24□□□□□ -1.41
VPS53-203ENST00000401468 VCYO14598 125 aa6.24□□□□□ -1.41
VPS53-203ENST00000401468 TSHBP01222 138 aa6.24□□□□□ -1.41
VPS53-203ENST00000401468 DNAH10OSP0CZ25 163 aa6.24□□□□□ -1.41
VPS53-203ENST00000401468 SMIM2Q9BVW6 85 aa6.24□□□□□ -1.41
VPS53-203ENST00000401468 TRAPPC1Q9Y5R8 145 aa6.24□□□□□ -1.41
VPS53-203ENST00000401468 IGHV3-38A0A0C4DH36 116 aa6.23□□□□□ -1.41
VPS53-203ENST00000401468 NBDYA0A0U1RRE5 68 aa6.23□□□□□ -1.41
VPS53-203ENST00000401468 K7EMI3 77 aa6.23□□□□□ -1.41
VPS53-203ENST00000401468 K7EP13 123 aa6.23□□□□□ -1.41
VPS53-203ENST00000401468 TCAPO15273 167 aa6.23□□□□□ -1.41
VPS53-203ENST00000401468 ESDP10768 282 aa6.23□□□□□ -1.41
VPS53-203ENST00000401468 RAB5AP20339 215 aa6.23□□□□□ -1.41
VPS53-203ENST00000401468 KIAA1644Q3SXP7 199 aa6.23□□□□□ -1.41
VPS53-203ENST00000401468 LINC01556Q5JQF7 62 aa6.23□□□□□ -1.41
VPS53-203ENST00000401468 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.23□□□□□ -1.41
VPS53-203ENST00000401468 CHCHD7Q9BUK0 85 aa6.23□□□□□ -1.41
VPS53-203ENST00000401468 TRBV25-1A0A075B6N4 114 aa6.22□□□□□ -1.41
VPS53-203ENST00000401468 IGHV1-24A0A0C4DH33 117 aa6.22□□□□□ -1.41
VPS53-203ENST00000401468 H7C423 109 aa6.22□□□□□ -1.41
VPS53-203ENST00000401468 FABP9Q0Z7S8 132 aa6.22□□□□□ -1.41
VPS53-203ENST00000401468 COTL1Q14019 142 aa6.22□□□□□ -1.41
VPS53-203ENST00000401468 NIT1Q86X76 327 aa6.22□□□□□ -1.41
VPS53-203ENST00000401468 WFDC10BQ8IUB3 73 aa6.22□□□□□ -1.41
VPS53-203ENST00000401468 MAP1LC3AQ9H492 121 aa6.22□□□□□ -1.41
VPS53-203ENST00000401468 DYNC1H1Q14204 4646 aaKnown RBP6.22□□□□□ -1.41
VPS53-203ENST00000401468 TRAV8-6A0A0B4J262 113 aa6.21□□□□□ -1.42
VPS53-203ENST00000401468 SIVA1O15304 175 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms