RNA–Protein interactions for RNA: ENST00000393211.3

COL17A1-203, Transcript of collagen type XVII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL17A1, Length 1,610 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-203ENST00000393211 DUX5Q96PT3 197 aa7.29□□□□□ -1.24
COL17A1-203ENST00000393211 DUX3Q96PT4 197 aa7.29□□□□□ -1.24
COL17A1-203ENST00000393211 H7C2G1 150 aa7.28□□□□□ -1.24
COL17A1-203ENST00000393211 PRSS2P07478 247 aa7.28□□□□□ -1.24
COL17A1-203ENST00000393211 NTN5Q8WTR8 489 aaPredicted RBP7.28□□□□□ -1.24
COL17A1-203ENST00000393211 COPS9Q8WXC6 57 aa7.28□□□□□ -1.24
COL17A1-203ENST00000393211 CLUHP3Q96NS8 147 aa7.28□□□□□ -1.24
COL17A1-203ENST00000393211 COL6A6A6NMZ7 2263 aa7.28□□□□□ -1.24
COL17A1-203ENST00000393211 NBASA2RRP1 2371 aa7.27□□□□□ -1.24
COL17A1-203ENST00000393211 TRAV26-1A0A087WT03 109 aa7.27□□□□□ -1.25
COL17A1-203ENST00000393211 TRAV8-3A0A0A6YYJ7 113 aa7.27□□□□□ -1.25
COL17A1-203ENST00000393211 NDUFA1O15239 70 aa7.27□□□□□ -1.25
COL17A1-203ENST00000393211 SNCGO76070 127 aa7.27□□□□□ -1.25
COL17A1-203ENST00000393211 DEFB131AP59861 70 aa7.27□□□□□ -1.25
COL17A1-203ENST00000393211 Q6YL49 198 aa7.27□□□□□ -1.25
COL17A1-203ENST00000393211 UBE2WQ96B02 151 aa7.27□□□□□ -1.25
COL17A1-203ENST00000393211 ZNF702PQ9H963 129 aa7.27□□□□□ -1.25
COL17A1-203ENST00000393211 PEMTQ9UBM1 199 aa7.27□□□□□ -1.25
COL17A1-203ENST00000393211 TRAV8-4A0A0B4J246 113 aa7.27□□□□□ -1.25
COL17A1-203ENST00000393211 FAM240AA0A1B0GVK7 77 aa7.27□□□□□ -1.25
COL17A1-203ENST00000393211 KNCNA6PVL3 124 aa7.27□□□□□ -1.25
COL17A1-203ENST00000393211 RS1O15537 224 aa7.27□□□□□ -1.25
COL17A1-203ENST00000393211 FSHBP01225 129 aa7.27□□□□□ -1.25
COL17A1-203ENST00000393211 CIRBPQ14011 172 aaKnown RBP7.27□□□□□ -1.25
COL17A1-203ENST00000393211 DEFB121Q5J5C9 76 aa7.27□□□□□ -1.25
COL17A1-203ENST00000393211 ADAMTSL4-AS1Q5T5F5 129 aa7.27□□□□□ -1.25
COL17A1-203ENST00000393211 C2orf82Q6UX34 121 aa7.27□□□□□ -1.25
COL17A1-203ENST00000393211 FAM19A3Q7Z5A8 133 aa7.27□□□□□ -1.25
COL17A1-203ENST00000393211 TMEM61Q8N0U2 210 aa7.27□□□□□ -1.25
COL17A1-203ENST00000393211 PPDPFQ9H3Y8 114 aa7.27□□□□□ -1.25
COL17A1-203ENST00000393211 H7C423 109 aa7.26□□□□□ -1.25
COL17A1-203ENST00000393211 LST1O00453 97 aa7.26□□□□□ -1.25
COL17A1-203ENST00000393211 PROK1P58294 105 aa7.26□□□□□ -1.25
COL17A1-203ENST00000393211 GAGE2BQ13066 116 aa7.26□□□□□ -1.25
COL17A1-203ENST00000393211 GAGE2EQ4V326 116 aa7.26□□□□□ -1.25
COL17A1-203ENST00000393211 LCE2DQ5TA82 110 aaPredicted RBP7.26□□□□□ -1.25
COL17A1-203ENST00000393211 C11orf72Q8NBR9 251 aa7.26□□□□□ -1.25
COL17A1-203ENST00000393211 ANAPC13Q9BS18 74 aa7.26□□□□□ -1.25
COL17A1-203ENST00000393211 GAGE2DQ9UEU5 116 aa7.26□□□□□ -1.25
COL17A1-203ENST00000393211 ATRXP46100 2492 aa7.25□□□□□ -1.25
COL17A1-203ENST00000393211 CSMD1Q96PZ7 3565 aa7.25□□□□□ -1.25
COL17A1-203ENST00000393211 A0A096LNT2 108 aa7.25□□□□□ -1.25
COL17A1-203ENST00000393211 IGHV3-73A0A0B4J1V6 119 aa7.25□□□□□ -1.25
COL17A1-203ENST00000393211 RBMY1BA6NDE4 496 aaKnown RBP7.25□□□□□ -1.25
COL17A1-203ENST00000393211 RBMY1EA6NEQ0 496 aaKnown RBP7.25□□□□□ -1.25
COL17A1-203ENST00000393211 ADARB2-AS1A8MUL3 147 aa7.25□□□□□ -1.25
COL17A1-203ENST00000393211 RBMY1DP0C7P1 496 aaKnown RBP7.25□□□□□ -1.25
COL17A1-203ENST00000393211 HERVK_113P63121 156 aa7.25□□□□□ -1.25
COL17A1-203ENST00000393211 CEMP1Q6PRD7 247 aaPredicted RBP7.25□□□□□ -1.25
COL17A1-203ENST00000393211 Q8N2B8 174 aa7.25□□□□□ -1.25
COL17A1-203ENST00000393211 PRRC2AP48634 2157 aaKnown RBP7.24□□□□□ -1.25
COL17A1-203ENST00000393211 IGLV5-39A0A0G2JS06 123 aa7.24□□□□□ -1.25
COL17A1-203ENST00000393211 INSP01308 110 aa7.24□□□□□ -1.25
COL17A1-203ENST00000393211 Q6ZSN1 163 aa7.24□□□□□ -1.25
COL17A1-203ENST00000393211 BEX4Q9NWD9 120 aaPredicted RBP7.24□□□□□ -1.25
COL17A1-203ENST00000393211 CSDC2Q9Y534 153 aaKnown RBP7.24□□□□□ -1.25
COL17A1-203ENST00000393211 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.23□□□□□ -1.25
COL17A1-203ENST00000393211 TEX49A0A1B0GTD5 131 aa7.23□□□□□ -1.25
COL17A1-203ENST00000393211 IGKV2-29A2NJV5 120 aaPredicted RBP7.23□□□□□ -1.25
COL17A1-203ENST00000393211 HTN1P15515 57 aa7.23□□□□□ -1.25
COL17A1-203ENST00000393211 TMEM101Q96IK0 257 aa7.23□□□□□ -1.25
COL17A1-203ENST00000393211 LINC01587Q99440 93 aa7.23□□□□□ -1.25
COL17A1-203ENST00000393211 DOPEY2Q9Y3R5 2298 aa7.23□□□□□ -1.25
COL17A1-203ENST00000393211 SPTAN1Q13813 2472 aaKnown RBP7.23□□□□□ -1.25
COL17A1-203ENST00000393211 GAGE5Q13069 117 aa7.23□□□□□ -1.25
COL17A1-203ENST00000393211 GAGE6Q13070 117 aa7.23□□□□□ -1.25
COL17A1-203ENST00000393211 DGAT2L7PQ6IED9 249 aa7.23□□□□□ -1.25
COL17A1-203ENST00000393211 C4orf3Q8WVX3 66 aa7.23□□□□□ -1.25
COL17A1-203ENST00000393211 MAP6D1Q9H9H5 199 aa7.23□□□□□ -1.25
COL17A1-203ENST00000393211 CDKN2A-AS1Q9UH64 79 aa7.23□□□□□ -1.25
COL17A1-203ENST00000393211 TRAV25A0A0B4J276 109 aa7.22□□□□□ -1.25
COL17A1-203ENST00000393211 TRBV10-1A0A0K0K1A3 114 aa7.22□□□□□ -1.25
COL17A1-203ENST00000393211 SLURP1P55000 103 aa7.22□□□□□ -1.25
COL17A1-203ENST00000393211 RNASE13Q5GAN3 156 aaKnown RBP7.22□□□□□ -1.25
COL17A1-203ENST00000393211 NACAE9PAV3 2078 aa7.22□□□□□ -1.25
COL17A1-203ENST00000393211 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.21□□□□□ -1.26
COL17A1-203ENST00000393211 ACACBO00763 2458 aa7.21□□□□□ -1.26
COL17A1-203ENST00000393211 ACYP1P07311 99 aa7.21□□□□□ -1.26
COL17A1-203ENST00000393211 NDUFV3P56181 108 aaKnown RBP7.21□□□□□ -1.26
COL17A1-203ENST00000393211 TTC32Q5I0X7 151 aa7.21□□□□□ -1.26
COL17A1-203ENST00000393211 USP24Q9UPU5 2620 aa7.21□□□□□ -1.26
COL17A1-203ENST00000393211 TRAV4A0A0B4J268 109 aa7.2□□□□□ -1.26
COL17A1-203ENST00000393211 HERV-K104P63124 156 aa7.2□□□□□ -1.26
COL17A1-203ENST00000393211 AKAP6Q13023 2319 aa7.2□□□□□ -1.26
COL17A1-203ENST00000393211 DAZ2Q13117 558 aaKnown RBP7.2□□□□□ -1.26
COL17A1-203ENST00000393211 DEFB114Q30KQ6 69 aa7.2□□□□□ -1.26
COL17A1-203ENST00000393211 DAZ4Q86SG3 579 aaKnown RBP7.2□□□□□ -1.26
COL17A1-203ENST00000393211 C15orf53Q8NAA6 179 aa7.2□□□□□ -1.26
COL17A1-203ENST00000393211 IL17DQ8TAD2 202 aa7.2□□□□□ -1.26
COL17A1-203ENST00000393211 LINC00308Q8TCZ7 52 aa7.2□□□□□ -1.26
COL17A1-203ENST00000393211 DYNLRB2Q8TF09 96 aa7.2□□□□□ -1.26
COL17A1-203ENST00000393211 DAZ3Q9NR90 486 aaKnown RBP7.2□□□□□ -1.26
COL17A1-203ENST00000393211 Q9UF83 564 aa7.2□□□□□ -1.26
COL17A1-203ENST00000393211 IGHV3OR16-12A0A075B7B8 117 aa7.19□□□□□ -1.26
COL17A1-203ENST00000393211 A8MZ25 164 aa7.19□□□□□ -1.26
COL17A1-203ENST00000393211 COX7A2LO14548 114 aa7.19□□□□□ -1.26
COL17A1-203ENST00000393211 NHLRC4P0CG21 123 aaPredicted RBP7.19□□□□□ -1.26
COL17A1-203ENST00000393211 LINC00242Q5T6M2 205 aa7.19□□□□□ -1.26
COL17A1-203ENST00000393211 CITED2Q99967 270 aaPredicted RBP7.19□□□□□ -1.26
COL17A1-203ENST00000393211 CRLF1O75462 422 aa7.19□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms