RNA–Protein interactions for RNA: ENST00000392811.6

SMARCD3-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3, humanhuman

TSL 1 (best) BASIC

Gene SMARCD3, Length 2,018 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCD3-203ENST00000392811 NFE4Q86UQ8 179 aa18.47■□□□□ 0.55
SMARCD3-203ENST00000392811 C19orf73Q9NVV2 129 aa18.47■□□□□ 0.55
SMARCD3-203ENST00000392811 GIG44P09565 113 aaPredicted RBP18.47■□□□□ 0.55
SMARCD3-203ENST00000392811 KRTAP10-3P60369 221 aa18.47■□□□□ 0.55
SMARCD3-203ENST00000392811 HECTD1Q9ULT8 2610 aa18.47■□□□□ 0.55
SMARCD3-203ENST00000392811 TRBV7-3A0A075B6L6 115 aa18.46■□□□□ 0.55
SMARCD3-203ENST00000392811 DNAJC30Q96LL9 226 aa18.46■□□□□ 0.55
SMARCD3-203ENST00000392811 NIPBLQ6KC79 2804 aaeCLIP18.46■□□□□ 0.55
SMARCD3-203ENST00000392811 SETXQ7Z333 2677 aaKnown RBP18.46■□□□□ 0.55
SMARCD3-203ENST00000392811 TRGV1A0A0A0MS02 117 aa18.45■□□□□ 0.54
SMARCD3-203ENST00000392811 FAM110AQ9BQ89 295 aa18.45■□□□□ 0.54
SMARCD3-203ENST00000392811 VCX2Q9H322 139 aa18.45■□□□□ 0.54
SMARCD3-203ENST00000392811 PYGO1Q9Y3Y4 419 aa18.45■□□□□ 0.54
SMARCD3-203ENST00000392811 K7ERJ3 54 aa18.45■□□□□ 0.54
SMARCD3-203ENST00000392811 NHP2Q9NX24 153 aaKnown RBP18.45■□□□□ 0.54
SMARCD3-203ENST00000392811 TMEM263Q8WUH6 116 aaKnown RBP18.44■□□□□ 0.54
SMARCD3-203ENST00000392811 FAM104AQ969W3 186 aa18.44■□□□□ 0.54
SMARCD3-203ENST00000392811 PLEKHB2Q96CS7 222 aa18.44■□□□□ 0.54
SMARCD3-203ENST00000392811 CHCHD7Q9BUK0 85 aa18.44■□□□□ 0.54
SMARCD3-203ENST00000392811 PHLDA1Q8WV24 401 aaPredicted RBP18.43■□□□□ 0.54
SMARCD3-203ENST00000392811 RPL35AP18077 110 aaKnown RBP18.42■□□□□ 0.54
SMARCD3-203ENST00000392811 IGHV3-38A0A0C4DH36 116 aa18.42■□□□□ 0.54
SMARCD3-203ENST00000392811 TSPEAR-AS2P59090 65 aa18.42■□□□□ 0.54
SMARCD3-203ENST00000392811 CEMP1Q6PRD7 247 aaPredicted RBP18.42■□□□□ 0.54
SMARCD3-203ENST00000392811 NDUFA11Q86Y39 141 aa18.42■□□□□ 0.54
SMARCD3-203ENST00000392811 SCGB1D4Q6XE38 83 aa18.41■□□□□ 0.54
SMARCD3-203ENST00000392811 Q6ZTI0 123 aa18.41■□□□□ 0.54
SMARCD3-203ENST00000392811 A0A0J9YXV3 536 aa18.4■□□□□ 0.54
SMARCD3-203ENST00000392811 GAGE10A6NGK3 116 aa18.4■□□□□ 0.54
SMARCD3-203ENST00000392811 ZNF479Q96JC4 524 aa18.4■□□□□ 0.54
SMARCD3-203ENST00000392811 AMELXQ99217 191 aa18.4■□□□□ 0.54
SMARCD3-203ENST00000392811 A0A1W2PPM0 123 aa18.39■□□□□ 0.53
SMARCD3-203ENST00000392811 JMJD1CQ15652 2540 aa18.39■□□□□ 0.53
SMARCD3-203ENST00000392811 TMEM223A0PJW6 202 aa18.39■□□□□ 0.53
SMARCD3-203ENST00000392811 ZNF22P17026 224 aaPredicted RBP18.39■□□□□ 0.53
SMARCD3-203ENST00000392811 IGKV2D-29A0A075B6S2 120 aaPredicted RBP18.38■□□□□ 0.53
SMARCD3-203ENST00000392811 IGKV2-29A2NJV5 120 aaPredicted RBP18.38■□□□□ 0.53
SMARCD3-203ENST00000392811 COTL1Q14019 142 aa18.38■□□□□ 0.53
SMARCD3-203ENST00000392811 SAMD5Q5TGI4 173 aa18.37■□□□□ 0.53
SMARCD3-203ENST00000392811 UBE2D4Q9Y2X8 147 aa18.37■□□□□ 0.53
SMARCD3-203ENST00000392811 CRYBA4P53673 196 aa18.37■□□□□ 0.53
SMARCD3-203ENST00000392811 C12orf74Q32Q52 190 aa18.37■□□□□ 0.53
SMARCD3-203ENST00000392811 GTF2H5Q6ZYL4 71 aa18.37■□□□□ 0.53
SMARCD3-203ENST00000392811 NOP10Q9NPE3 64 aaKnown RBP18.37■□□□□ 0.53
SMARCD3-203ENST00000392811 J3QQQ9 107 aa18.36■□□□□ 0.53
SMARCD3-203ENST00000392811 K7EP34 96 aa18.36■□□□□ 0.53
SMARCD3-203ENST00000392811 PF4P02776 101 aa18.36■□□□□ 0.53
SMARCD3-203ENST00000392811 SPANXA1Q9NS26 97 aa18.36■□□□□ 0.53
SMARCD3-203ENST00000392811 INAFM1C9JVW0 142 aa18.35■□□□□ 0.53
SMARCD3-203ENST00000392811 RNASE13Q5GAN3 156 aaKnown RBP18.35■□□□□ 0.53
SMARCD3-203ENST00000392811 DAZ2Q13117 558 aaKnown RBP18.35■□□□□ 0.53
SMARCD3-203ENST00000392811 LINC00482Q8N8I6 264 aa18.35■□□□□ 0.53
SMARCD3-203ENST00000392811 CSNK1G2-AS1Q8NCQ2 148 aa18.35■□□□□ 0.53
SMARCD3-203ENST00000392811 C1QTNF4Q9BXJ3 329 aa18.35■□□□□ 0.53
SMARCD3-203ENST00000392811 TRAV4A0A0B4J268 109 aa18.34■□□□□ 0.53
SMARCD3-203ENST00000392811 A0A0J9YY99 117 aa18.34■□□□□ 0.53
SMARCD3-203ENST00000392811 PLAC8L1A1L4L8 177 aa18.34■□□□□ 0.53
SMARCD3-203ENST00000392811 C16orf74Q96GX8 76 aa18.34■□□□□ 0.53
SMARCD3-203ENST00000392811 LEPROTO15243 131 aa18.33■□□□□ 0.53
SMARCD3-203ENST00000392811 LGALS3P17931 250 aaKnown RBP18.33■□□□□ 0.53
SMARCD3-203ENST00000392811 OTOGQ6ZRI0 2925 aa18.33■□□□□ 0.53
SMARCD3-203ENST00000392811 FABP2P12104 132 aa18.32■□□□□ 0.52
SMARCD3-203ENST00000392811 MRPS36P82909 103 aaKnown RBP18.32■□□□□ 0.52
SMARCD3-203ENST00000392811 SRSF9Q13242 221 aaKnown RBP eCLIP18.32■□□□□ 0.52
SMARCD3-203ENST00000392811 SPCS1Q9Y6A9 102 aa18.32■□□□□ 0.52
SMARCD3-203ENST00000392811 K7EQD1 137 aa18.32■□□□□ 0.52
SMARCD3-203ENST00000392811 IGHV3-64A0A075B6Q5 118 aa18.31■□□□□ 0.52
SMARCD3-203ENST00000392811 A0A1B0GWB2 263 aa18.31■□□□□ 0.52
SMARCD3-203ENST00000392811 NOTCH2Q04721 2471 aa18.31■□□□□ 0.52
SMARCD3-203ENST00000392811 Q6ZUT4 128 aa18.3■□□□□ 0.52
SMARCD3-203ENST00000392811 OR5A1Q8NGJ0 315 aa18.3■□□□□ 0.52
SMARCD3-203ENST00000392811 TRBV10-1A0A0K0K1A3 114 aa18.3■□□□□ 0.52
SMARCD3-203ENST00000392811 GAGE12BA1L429 117 aa18.3■□□□□ 0.52
SMARCD3-203ENST00000392811 IGLL5B9A064 214 aa18.3■□□□□ 0.52
SMARCD3-203ENST00000392811 RPL36AP83881 106 aaKnown RBP18.29■□□□□ 0.52
SMARCD3-203ENST00000392811 SLC25A29Q8N8R3 303 aa18.29■□□□□ 0.52
SMARCD3-203ENST00000392811 RPL36ALQ969Q0 106 aaKnown RBP18.29■□□□□ 0.52
SMARCD3-203ENST00000392811 RRN3P1Q2M238 152 aa18.28■□□□□ 0.52
SMARCD3-203ENST00000392811 NOTCH3Q9UM47 2321 aa18.27■□□□□ 0.52
SMARCD3-203ENST00000392811 GAGE7O76087 117 aa18.27■□□□□ 0.52
SMARCD3-203ENST00000392811 GAGE12FP0CL80 117 aa18.27■□□□□ 0.52
SMARCD3-203ENST00000392811 GAGE12GP0CL81 117 aa18.27■□□□□ 0.52
SMARCD3-203ENST00000392811 GAGE12IP0CL82 117 aa18.27■□□□□ 0.52
SMARCD3-203ENST00000392811 SPANXB1Q9NS25 103 aaPredicted RBP18.27■□□□□ 0.52
SMARCD3-203ENST00000392811 OVOL2Q9BRP0 275 aa18.26■□□□□ 0.51
SMARCD3-203ENST00000392811 TINCRA0A1B0GVN0 87 aa18.25■□□□□ 0.51
SMARCD3-203ENST00000392811 TRGV2A0A075B6R0 118 aa18.25■□□□□ 0.51
SMARCD3-203ENST00000392811 TMEM238LA0A1B0GVL6 79 aa18.25■□□□□ 0.51
SMARCD3-203ENST00000392811 A6NJY4 79 aa18.25■□□□□ 0.51
SMARCD3-203ENST00000392811 GAGE12JA6NER3 117 aa18.24■□□□□ 0.51
SMARCD3-203ENST00000392811 UBE2D3P61077 147 aa18.24■□□□□ 0.51
SMARCD3-203ENST00000392811 UBE2D2P62837 147 aa18.24■□□□□ 0.51
SMARCD3-203ENST00000392811 GAGE4Q13068 117 aa18.24■□□□□ 0.51
SMARCD3-203ENST00000392811 GAGE5Q13069 117 aa18.24■□□□□ 0.51
SMARCD3-203ENST00000392811 GAGE13Q4V321 117 aa18.24■□□□□ 0.51
SMARCD3-203ENST00000392811 TIMM21Q9BVV7 248 aa18.24■□□□□ 0.51
SMARCD3-203ENST00000392811 DAZ4Q86SG3 579 aaKnown RBP18.23■□□□□ 0.51
SMARCD3-203ENST00000392811 DAZ3Q9NR90 486 aaKnown RBP18.23■□□□□ 0.51
SMARCD3-203ENST00000392811 IGHV3-30-3P0DP02 117 aa18.23■□□□□ 0.51
SMARCD3-203ENST00000392811 NTM-AS1Q6ZSK4 140 aa18.23■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 105.7 ms