RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 PET117Q6UWS5 81 aa6.48□□□□□ -1.37
UPF2-202ENST00000357604 PRM2P04554 102 aa6.48□□□□□ -1.37
UPF2-202ENST00000357604 PMCHL1Q16048 86 aa6.48□□□□□ -1.37
UPF2-202ENST00000357604 IQCJQ1A5X6 159 aa6.48□□□□□ -1.37
UPF2-202ENST00000357604 SCGB1D4Q6XE38 83 aa6.48□□□□□ -1.37
UPF2-202ENST00000357604 IFI27L1Q96BM0 104 aa6.48□□□□□ -1.37
UPF2-202ENST00000357604 POLQO75417 2590 aa6.48□□□□□ -1.37
UPF2-202ENST00000357604 hDV102S1A0JD36 115 aa6.47□□□□□ -1.37
UPF2-202ENST00000357604 F8WDY8 70 aa6.47□□□□□ -1.37
UPF2-202ENST00000357604 XCL1P47992 114 aa6.47□□□□□ -1.37
UPF2-202ENST00000357604 CFAP46Q8IYW2 2715 aa6.47□□□□□ -1.37
UPF2-202ENST00000357604 GAGE12HA6NDE8 117 aa6.47□□□□□ -1.37
UPF2-202ENST00000357604 GIG44P09565 113 aaPredicted RBP6.47□□□□□ -1.37
UPF2-202ENST00000357604 PDZD11Q5EBL8 140 aa6.47□□□□□ -1.37
UPF2-202ENST00000357604 TIMM21Q9BVV7 248 aa6.47□□□□□ -1.37
UPF2-202ENST00000357604 DNAH14Q0VDD8 3507 aa6.47□□□□□ -1.37
UPF2-202ENST00000357604 LOC100131303A0A0U1RQF7 123 aa6.47□□□□□ -1.37
UPF2-202ENST00000357604 IGHV1-58A0A0C4DH39 117 aa6.46□□□□□ -1.37
UPF2-202ENST00000357604 NBDYA0A0U1RRE5 68 aa6.46□□□□□ -1.37
UPF2-202ENST00000357604 A0A1B0GXF2 115 aa6.46□□□□□ -1.37
UPF2-202ENST00000357604 IGKCP01834 107 aa6.46□□□□□ -1.37
UPF2-202ENST00000357604 LINC01556Q5JQF7 62 aa6.46□□□□□ -1.37
UPF2-202ENST00000357604 TIMM17AQ99595 171 aa6.46□□□□□ -1.37
UPF2-202ENST00000357604 APLNQ9ULZ1 77 aa6.46□□□□□ -1.37
UPF2-202ENST00000357604 FN1P02751 2386 aaKnown RBP6.46□□□□□ -1.37
UPF2-202ENST00000357604 NDUFA1O15239 70 aa6.46□□□□□ -1.37
UPF2-202ENST00000357604 LINC00269Q8N2A0 174 aa6.46□□□□□ -1.37
UPF2-202ENST00000357604 TOMM6Q96B49 74 aa6.46□□□□□ -1.37
UPF2-202ENST00000357604 SCO1O75880 301 aa6.46□□□□□ -1.38
UPF2-202ENST00000357604 C20orf203Q8NBC4 194 aa6.46□□□□□ -1.38
UPF2-202ENST00000357604 ORAOV1Q8WV07 137 aa6.46□□□□□ -1.38
UPF2-202ENST00000357604 CAMK2N2Q96S95 79 aa6.46□□□□□ -1.38
UPF2-202ENST00000357604 HINT1P49773 126 aaPredicted RBP6.46□□□□□ -1.38
UPF2-202ENST00000357604 DMXL2Q8TDJ6 3036 aa6.45□□□□□ -1.38
UPF2-202ENST00000357604 MYMXA0A1B0GTQ4 84 aa6.45□□□□□ -1.38
UPF2-202ENST00000357604 VPS13AQ96RL7 3174 aa6.45□□□□□ -1.38
UPF2-202ENST00000357604 VAMP8Q9BV40 100 aa6.45□□□□□ -1.38
UPF2-202ENST00000357604 LINC00474Q9P2X8 69 aa6.45□□□□□ -1.38
UPF2-202ENST00000357604 A0A0C4DFX4 3053 aa6.45□□□□□ -1.38
UPF2-202ENST00000357604 UPK3BQ9BT76 320 aa6.45□□□□□ -1.38
UPF2-202ENST00000357604 TRBV27A0A0K0K1C4 114 aa6.44□□□□□ -1.38
UPF2-202ENST00000357604 ITPR3Q14573 2671 aa6.44□□□□□ -1.38
UPF2-202ENST00000357604 FLNAP21333 2647 aaKnown RBP6.44□□□□□ -1.38
UPF2-202ENST00000357604 JOSD1Q15040 202 aaPredicted RBP6.44□□□□□ -1.38
UPF2-202ENST00000357604 CHCHD10Q8WYQ3 142 aaPredicted RBP6.44□□□□□ -1.38
UPF2-202ENST00000357604 DEFB104AQ8WTQ1 72 aa6.44□□□□□ -1.38
UPF2-202ENST00000357604 PMCHL2Q9BQD1 86 aa6.44□□□□□ -1.38
UPF2-202ENST00000357604 IGLV5-52A0A0A0MRZ9 124 aa6.44□□□□□ -1.38
UPF2-202ENST00000357604 SERF1AO75920 110 aa6.44□□□□□ -1.38
UPF2-202ENST00000357604 NTN5Q8WTR8 489 aaPredicted RBP6.44□□□□□ -1.38
UPF2-202ENST00000357604 PRSS29PA6NIE9 313 aa6.43□□□□□ -1.38
UPF2-202ENST00000357604 C18orf32Q8TCD1 76 aa6.43□□□□□ -1.38
UPF2-202ENST00000357604 ESRGQ1W209 222 aa6.43□□□□□ -1.38
UPF2-202ENST00000357604 RNF185Q96GF1 192 aa6.43□□□□□ -1.38
UPF2-202ENST00000357604 CHAC1Q9BUX1 264 aa6.43□□□□□ -1.38
UPF2-202ENST00000357604 RBX1P62877 108 aa6.43□□□□□ -1.38
UPF2-202ENST00000357604 MRPS36P82909 103 aaKnown RBP6.43□□□□□ -1.38
UPF2-202ENST00000357604 PYGO1Q9Y3Y4 419 aa6.43□□□□□ -1.38
UPF2-202ENST00000357604 NKAPP1Q8N9T2 125 aa6.43□□□□□ -1.38
UPF2-202ENST00000357604 IGLV10-54A0A075B6I4 117 aa6.42□□□□□ -1.38
UPF2-202ENST00000357604 A0A1B0GUV1 79 aa6.42□□□□□ -1.38
UPF2-202ENST00000357604 NMUP48645 174 aa6.42□□□□□ -1.38
UPF2-202ENST00000357604 LINC00158P58513 81 aa6.42□□□□□ -1.38
UPF2-202ENST00000357604 RPL18AQ02543 176 aaKnown RBP6.42□□□□□ -1.38
UPF2-202ENST00000357604 OR10D4PQ8NGN7 298 aa6.42□□□□□ -1.38
UPF2-202ENST00000357604 LINC00588Q9Y4M8 146 aa6.42□□□□□ -1.38
UPF2-202ENST00000357604 LINC00476Q8WZB0 136 aa6.42□□□□□ -1.38
UPF2-202ENST00000357604 TSHBP01222 138 aa6.41□□□□□ -1.38
UPF2-202ENST00000357604 HERV-K104P63124 156 aa6.41□□□□□ -1.38
UPF2-202ENST00000357604 IGHV3-64A0A075B6Q5 118 aa6.41□□□□□ -1.38
UPF2-202ENST00000357604 SRSF9Q13242 221 aaKnown RBP eCLIP6.41□□□□□ -1.38
UPF2-202ENST00000357604 CD164L2Q6UWJ8 174 aa6.41□□□□□ -1.38
UPF2-202ENST00000357604 RPL24P83731 157 aaKnown RBP6.41□□□□□ -1.38
UPF2-202ENST00000357604 CARD19Q96LW7 228 aa6.41□□□□□ -1.38
UPF2-202ENST00000357604 TRAV12-1A0A0B4J245 112 aa6.4□□□□□ -1.38
UPF2-202ENST00000357604 PLAC8L1A1L4L8 177 aa6.4□□□□□ -1.38
UPF2-202ENST00000357604 IBA57-AS1B1ANH7 110 aa6.4□□□□□ -1.38
UPF2-202ENST00000357604 TSTD3H0UI37 97 aa6.4□□□□□ -1.38
UPF2-202ENST00000357604 SPAG11BQ08648 103 aa6.4□□□□□ -1.38
UPF2-202ENST00000357604 C7orf33Q8WU49 177 aa6.4□□□□□ -1.38
UPF2-202ENST00000357604 TMEM238LA0A1B0GVL6 79 aa6.4□□□□□ -1.38
UPF2-202ENST00000357604 A6NJY4 79 aa6.4□□□□□ -1.38
UPF2-202ENST00000357604 COX7B2Q8TF08 81 aa6.4□□□□□ -1.39
UPF2-202ENST00000357604 C2CD3Q4AC94 2353 aa6.4□□□□□ -1.39
UPF2-202ENST00000357604 TINCRA0A1B0GVN0 87 aa6.4□□□□□ -1.39
UPF2-202ENST00000357604 MRPL52Q86TS9 123 aaKnown RBP6.4□□□□□ -1.39
UPF2-202ENST00000357604 WFDC10BQ8IUB3 73 aa6.4□□□□□ -1.39
UPF2-202ENST00000357604 DNAH10OSP0CZ25 163 aa6.39□□□□□ -1.39
UPF2-202ENST00000357604 Q1RN00 199 aa6.39□□□□□ -1.39
UPF2-202ENST00000357604 SONP18583 2426 aaKnown RBP6.39□□□□□ -1.39
UPF2-202ENST00000357604 COLCA2A8K830 154 aa6.39□□□□□ -1.39
UPF2-202ENST00000357604 FLNBO75369 2602 aaKnown RBP6.38□□□□□ -1.39
UPF2-202ENST00000357604 POLR2KP53803 58 aaKnown RBP6.38□□□□□ -1.39
UPF2-202ENST00000357604 CSDC2Q9Y534 153 aaKnown RBP6.38□□□□□ -1.39
UPF2-202ENST00000357604 MUC3AQ02505 3323 aa6.38□□□□□ -1.39
UPF2-202ENST00000357604 LOC107984640A0A0U1RRK4 108 aa6.38□□□□□ -1.39
UPF2-202ENST00000357604 LCE6AA0A183 80 aa6.38□□□□□ -1.39
UPF2-202ENST00000357604 TMEM238C9JI98 176 aa6.38□□□□□ -1.39
UPF2-202ENST00000357604 PTTG1IPP53801 180 aa6.38□□□□□ -1.39
UPF2-202ENST00000357604 MPV17L2Q567V2 206 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms