RNA–Protein interactions for RNA: ENST00000357517.6

PCDH1-202, Transcript of protocadherin 1, humanhuman

TSL 2

Gene PCDH1, Length 3,307 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-202ENST00000357517 DEFB121Q5J5C9 76 aa7.78□□□□□ -1.16
PCDH1-202ENST00000357517 EP300Q09472 2414 aaPredicted RBP7.77□□□□□ -1.17
PCDH1-202ENST00000357517 IGLV3-9A0A075B6K5 115 aa7.77□□□□□ -1.17
PCDH1-202ENST00000357517 CCL21O00585 134 aa7.77□□□□□ -1.17
PCDH1-202ENST00000357517 DYNLRB1Q9NP97 96 aa7.77□□□□□ -1.17
PCDH1-202ENST00000357517 IGHV1-69DA0A0B4J2H0 117 aa7.77□□□□□ -1.17
PCDH1-202ENST00000357517 BUB3O43684 328 aa7.77□□□□□ -1.17
PCDH1-202ENST00000357517 C15orf32Q32M92 178 aa7.77□□□□□ -1.17
PCDH1-202ENST00000357517 TMEM30BQ3MIR4 351 aa7.77□□□□□ -1.17
PCDH1-202ENST00000357517 C9orf129Q5T035 196 aaKnown RBP7.77□□□□□ -1.17
PCDH1-202ENST00000357517 PRORYQ9H606 182 aa7.77□□□□□ -1.17
PCDH1-202ENST00000357517 NBR2O15453 112 aa7.76□□□□□ -1.17
PCDH1-202ENST00000357517 GHRHP01286 108 aa7.76□□□□□ -1.17
PCDH1-202ENST00000357517 TIMM17AQ99595 171 aa7.76□□□□□ -1.17
PCDH1-202ENST00000357517 LITAFQ99732 161 aa7.76□□□□□ -1.17
PCDH1-202ENST00000357517 MIAQ16674 131 aa7.76□□□□□ -1.17
PCDH1-202ENST00000357517 FAM218AQ96MZ4 157 aa7.76□□□□□ -1.17
PCDH1-202ENST00000357517 COL12A1Q99715 3063 aa7.76□□□□□ -1.17
PCDH1-202ENST00000357517 LINC00846Q9NV44 126 aa7.76□□□□□ -1.17
PCDH1-202ENST00000357517 MAP1AP78559 2803 aaPredicted RBP7.76□□□□□ -1.17
PCDH1-202ENST00000357517 CXCL5P42830 114 aa7.75□□□□□ -1.17
PCDH1-202ENST00000357517 C9orf139Q6ZV77 190 aa7.75□□□□□ -1.17
PCDH1-202ENST00000357517 TRAV21A0A0B4J279 112 aa7.75□□□□□ -1.17
PCDH1-202ENST00000357517 K7ENP7 123 aa7.75□□□□□ -1.17
PCDH1-202ENST00000357517 LINC00482Q8N8I6 264 aa7.75□□□□□ -1.17
PCDH1-202ENST00000357517 IGLV11-55A0A075B6I3 123 aa7.75□□□□□ -1.17
PCDH1-202ENST00000357517 RNASE1P07998 156 aaKnown RBP7.74□□□□□ -1.17
PCDH1-202ENST00000357517 POLR2KP53803 58 aaKnown RBP7.74□□□□□ -1.17
PCDH1-202ENST00000357517 UPK3BQ9BT76 320 aa7.74□□□□□ -1.17
PCDH1-202ENST00000357517 IGHV4-4A0A075B6R2 117 aa7.74□□□□□ -1.17
PCDH1-202ENST00000357517 IGHV3OR16-10A0A075B7F0 116 aa7.74□□□□□ -1.17
PCDH1-202ENST00000357517 C20orf173Q96LM9 149 aa7.74□□□□□ -1.17
PCDH1-202ENST00000357517 SNURFQ9Y675 71 aa7.74□□□□□ -1.17
PCDH1-202ENST00000357517 TMEM178BH3BS89 294 aa7.73□□□□□ -1.17
PCDH1-202ENST00000357517 COX7A2LO14548 114 aa7.73□□□□□ -1.17
PCDH1-202ENST00000357517 PPP1R17O96001 155 aa7.73□□□□□ -1.17
PCDH1-202ENST00000357517 RNASE3P12724 160 aaKnown RBP7.73□□□□□ -1.17
PCDH1-202ENST00000357517 MPLKIPQ8TAP9 179 aa7.73□□□□□ -1.17
PCDH1-202ENST00000357517 LINC00474Q9P2X8 69 aa7.73□□□□□ -1.17
PCDH1-202ENST00000357517 AVPP01185 164 aa7.73□□□□□ -1.17
PCDH1-202ENST00000357517 PRIMA1Q86XR5 153 aa7.73□□□□□ -1.17
PCDH1-202ENST00000357517 RBMY1BA6NDE4 496 aaKnown RBP7.73□□□□□ -1.17
PCDH1-202ENST00000357517 RBMY1EA6NEQ0 496 aaKnown RBP7.73□□□□□ -1.17
PCDH1-202ENST00000357517 NCR3O14931 201 aa7.73□□□□□ -1.17
PCDH1-202ENST00000357517 RBMY1DP0C7P1 496 aaKnown RBP7.73□□□□□ -1.17
PCDH1-202ENST00000357517 RBMY1A1P0DJD3 496 aaKnown RBP7.73□□□□□ -1.17
PCDH1-202ENST00000357517 RBMY1CP0DJD4 496 aa7.73□□□□□ -1.17
PCDH1-202ENST00000357517 INAFM2P0DMQ5 153 aa7.73□□□□□ -1.17
PCDH1-202ENST00000357517 RBMY1FQ15415 496 aaKnown RBP7.73□□□□□ -1.17
PCDH1-202ENST00000357517 S100A7L2Q5SY68 101 aa7.73□□□□□ -1.17
PCDH1-202ENST00000357517 IGLV4-3A0A075B6K6 122 aa7.72□□□□□ -1.17
PCDH1-202ENST00000357517 SLPIP03973 132 aa7.72□□□□□ -1.17
PCDH1-202ENST00000357517 AKAP13Q12802 2813 aa7.72□□□□□ -1.17
PCDH1-202ENST00000357517 LY6LH3BQJ8 138 aa7.72□□□□□ -1.17
PCDH1-202ENST00000357517 TMEM190Q8WZ59 177 aa7.72□□□□□ -1.17
PCDH1-202ENST00000357517 IGLV1-47P01700 117 aa7.72□□□□□ -1.17
PCDH1-202ENST00000357517 TRBV12-3P01733 135 aa7.72□□□□□ -1.17
PCDH1-202ENST00000357517 FAM19A1Q7Z5A9 133 aa7.72□□□□□ -1.17
PCDH1-202ENST00000357517 TRAV12-2A0A075B6T6 113 aa7.71□□□□□ -1.17
PCDH1-202ENST00000357517 SS18Q15532 418 aa7.71□□□□□ -1.17
PCDH1-202ENST00000357517 PIK3CD-AS1Q5SR53 167 aa7.71□□□□□ -1.17
PCDH1-202ENST00000357517 DCHS2Q6V1P9 2916 aa7.71□□□□□ -1.18
PCDH1-202ENST00000357517 IGHV1-58A0A0C4DH39 117 aa7.71□□□□□ -1.18
PCDH1-202ENST00000357517 RBM3P98179 157 aaKnown RBP7.71□□□□□ -1.18
PCDH1-202ENST00000357517 ZFAND2AQ8N6M9 145 aa7.71□□□□□ -1.18
PCDH1-202ENST00000357517 DKK4Q9UBT3 224 aa7.71□□□□□ -1.18
PCDH1-202ENST00000357517 G3V318 75 aa7.7□□□□□ -1.18
PCDH1-202ENST00000357517 LINC01600Q96MT4 127 aa7.7□□□□□ -1.18
PCDH1-202ENST00000357517 Q9H8V8 135 aa7.7□□□□□ -1.18
PCDH1-202ENST00000357517 ENHOQ6UWT2 76 aa7.7□□□□□ -1.18
PCDH1-202ENST00000357517 ZFAND3Q9H8U3 227 aa7.7□□□□□ -1.18
PCDH1-202ENST00000357517 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.69□□□□□ -1.18
PCDH1-202ENST00000357517 IGHV3-38A0A0C4DH36 116 aa7.69□□□□□ -1.18
PCDH1-202ENST00000357517 IGKV2-29A2NJV5 120 aaPredicted RBP7.69□□□□□ -1.18
PCDH1-202ENST00000357517 LY6HO94772 140 aa7.69□□□□□ -1.18
PCDH1-202ENST00000357517 RPL28P46779 137 aaKnown RBP7.69□□□□□ -1.18
PCDH1-202ENST00000357517 LINC00315P59091 139 aa7.69□□□□□ -1.18
PCDH1-202ENST00000357517 ACACAQ13085 2346 aa7.69□□□□□ -1.18
PCDH1-202ENST00000357517 C20orf203Q8NBC4 194 aa7.69□□□□□ -1.18
PCDH1-202ENST00000357517 SOSTDC1Q6X4U4 206 aa7.69□□□□□ -1.18
PCDH1-202ENST00000357517 LY6G5BQ8NDX9 201 aa7.69□□□□□ -1.18
PCDH1-202ENST00000357517 KNCNA6PVL3 124 aa7.68□□□□□ -1.18
PCDH1-202ENST00000357517 LINC00308Q8TCZ7 52 aa7.68□□□□□ -1.18
PCDH1-202ENST00000357517 TECTAO75443 2155 aa7.68□□□□□ -1.18
PCDH1-202ENST00000357517 RIF1Q5UIP0 2472 aaKnown RBP7.68□□□□□ -1.18
PCDH1-202ENST00000357517 ZFHX3Q15911 3703 aa7.68□□□□□ -1.18
PCDH1-202ENST00000357517 VSIG2Q96IQ7 327 aa7.68□□□□□ -1.18
PCDH1-202ENST00000357517 CDKN2A-AS1Q9UH64 79 aa7.68□□□□□ -1.18
PCDH1-202ENST00000357517 NDUFC2O95298 119 aa7.68□□□□□ -1.18
PCDH1-202ENST00000357517 CUL9Q8IWT3 2517 aa7.67□□□□□ -1.18
PCDH1-202ENST00000357517 XCL1P47992 114 aa7.67□□□□□ -1.18
PCDH1-202ENST00000357517 PROK1P58294 105 aa7.67□□□□□ -1.18
PCDH1-202ENST00000357517 XCL2Q9UBD3 114 aa7.67□□□□□ -1.18
PCDH1-202ENST00000357517 C22orf24Q9Y442 160 aa7.67□□□□□ -1.18
PCDH1-202ENST00000357517 TRBV27A0A0K0K1C4 114 aa7.67□□□□□ -1.18
PCDH1-202ENST00000357517 CELSR1Q9NYQ6 3014 aa7.67□□□□□ -1.18
PCDH1-202ENST00000357517 IGHG2P01859 326 aa7.67□□□□□ -1.18
PCDH1-202ENST00000357517 DPM3Q9P2X0 92 aa7.67□□□□□ -1.18
PCDH1-202ENST00000357517 SERP1Q9Y6X1 66 aa7.67□□□□□ -1.18
PCDH1-202ENST00000357517 KIF25-AS1Q9Y6Z4 181 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms