RNA–Protein interactions for RNA: ENST00000356352.6

UPF2-201, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,569 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-201ENST00000356352 CDKN2A-AS1Q9UH64 79 aa4.83□□□□□ -1.64
UPF2-201ENST00000356352 U3KQK5 164 aa4.83□□□□□ -1.64
UPF2-201ENST00000356352 TRBV6-5A0A0K0K1A5 114 aa4.83□□□□□ -1.64
UPF2-201ENST00000356352 IGLV2-8P01709 118 aa4.83□□□□□ -1.64
UPF2-201ENST00000356352 NDUFV3P56181 108 aaKnown RBP4.83□□□□□ -1.64
UPF2-201ENST00000356352 CD164L2Q6UWJ8 174 aa4.83□□□□□ -1.64
UPF2-201ENST00000356352 CACNA1EQ15878 2313 aa4.83□□□□□ -1.64
UPF2-201ENST00000356352 M0QY20 66 aa4.83□□□□□ -1.64
UPF2-201ENST00000356352 PSMG3-AS1Q96PY0 264 aa4.83□□□□□ -1.64
UPF2-201ENST00000356352 MLST8Q9BVC4 326 aa4.83□□□□□ -1.64
UPF2-201ENST00000356352 SERP1Q9Y6X1 66 aa4.83□□□□□ -1.64
UPF2-201ENST00000356352 ENHOQ6UWT2 76 aa4.83□□□□□ -1.64
UPF2-201ENST00000356352 C20orf173Q96LM9 149 aa4.83□□□□□ -1.64
UPF2-201ENST00000356352 MSMPQ1L6U9 139 aa4.82□□□□□ -1.64
UPF2-201ENST00000356352 LELP1Q5T871 98 aa4.82□□□□□ -1.64
UPF2-201ENST00000356352 C20orf197Q8N268 126 aa4.82□□□□□ -1.64
UPF2-201ENST00000356352 ANAPC1Q9H1A4 1944 aa4.82□□□□□ -1.64
UPF2-201ENST00000356352 A0A1W2PNU3 283 aaPredicted RBP4.82□□□□□ -1.64
UPF2-201ENST00000356352 SDIM1Q6ZPB5 146 aa4.82□□□□□ -1.64
UPF2-201ENST00000356352 Q6ZSV7 163 aa4.82□□□□□ -1.64
UPF2-201ENST00000356352 WFDC10BQ8IUB3 73 aa4.82□□□□□ -1.64
UPF2-201ENST00000356352 LY6LH3BQJ8 138 aa4.82□□□□□ -1.64
UPF2-201ENST00000356352 CCKP06307 115 aa4.82□□□□□ -1.64
UPF2-201ENST00000356352 PIK3CD-AS1Q5SR53 167 aa4.82□□□□□ -1.64
UPF2-201ENST00000356352 ZFAND3Q9H8U3 227 aa4.82□□□□□ -1.64
UPF2-201ENST00000356352 UBE2D4Q9Y2X8 147 aa4.82□□□□□ -1.64
UPF2-201ENST00000356352 INAFM1C9JVW0 142 aa4.82□□□□□ -1.64
UPF2-201ENST00000356352 TEX49A0A1B0GTD5 131 aa4.81□□□□□ -1.64
UPF2-201ENST00000356352 MRPS36P82909 103 aaKnown RBP4.81□□□□□ -1.64
UPF2-201ENST00000356352 PTH2Q96A98 100 aa4.81□□□□□ -1.64
UPF2-201ENST00000356352 RNASE8Q8TDE3 154 aaKnown RBP4.81□□□□□ -1.64
UPF2-201ENST00000356352 IMUPQ9GZP8 106 aa4.81□□□□□ -1.64
UPF2-201ENST00000356352 A0A096LNI7 61 aa4.81□□□□□ -1.64
UPF2-201ENST00000356352 TRBV27A0A0K0K1C4 114 aa4.81□□□□□ -1.64
UPF2-201ENST00000356352 MRGPRG-AS1Q2M3A8 158 aa4.81□□□□□ -1.64
UPF2-201ENST00000356352 DOCK11Q5JSL3 2073 aa4.81□□□□□ -1.64
UPF2-201ENST00000356352 TMEM131Q92545 1883 aa4.81□□□□□ -1.64
UPF2-201ENST00000356352 C19orf84I3L1E1 186 aa4.8□□□□□ -1.64
UPF2-201ENST00000356352 UBE2D3P61077 147 aa4.8□□□□□ -1.64
UPF2-201ENST00000356352 C6orf99Q4VX62 202 aa4.8□□□□□ -1.64
UPF2-201ENST00000356352 EIF4EBP1Q13541 118 aaPredicted RBP4.8□□□□□ -1.64
UPF2-201ENST00000356352 Q8N976 141 aa4.8□□□□□ -1.64
UPF2-201ENST00000356352 Q8N9L7 120 aa4.8□□□□□ -1.64
UPF2-201ENST00000356352 TRIAP1O43715 76 aa4.8□□□□□ -1.64
UPF2-201ENST00000356352 C11orf71Q6IPW1 123 aa4.8□□□□□ -1.64
UPF2-201ENST00000356352 FAM19A3Q7Z5A8 133 aa4.8□□□□□ -1.64
UPF2-201ENST00000356352 TP73-AS1Q9UF72 201 aa4.8□□□□□ -1.64
UPF2-201ENST00000356352 MED12Q93074 2177 aa4.8□□□□□ -1.64
UPF2-201ENST00000356352 C1orf158Q8N1D5 194 aa4.8□□□□□ -1.64
UPF2-201ENST00000356352 MPLKIPQ8TAP9 179 aa4.8□□□□□ -1.64
UPF2-201ENST00000356352 IGLV2-33A0A075B6J2 118 aaPredicted RBP4.8□□□□□ -1.64
UPF2-201ENST00000356352 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.8□□□□□ -1.64
UPF2-201ENST00000356352 MBD6Q96DN6 1003 aa4.8□□□□□ -1.64
UPF2-201ENST00000356352 ZNF702PQ9H963 129 aa4.8□□□□□ -1.64
UPF2-201ENST00000356352 RBX1P62877 108 aa4.79□□□□□ -1.64
UPF2-201ENST00000356352 SLPIP03973 132 aa4.79□□□□□ -1.64
UPF2-201ENST00000356352 SCXQ7RTU7 201 aa4.79□□□□□ -1.64
UPF2-201ENST00000356352 C9orf85Q96MD7 179 aa4.79□□□□□ -1.64
UPF2-201ENST00000356352 BBC3Q96PG8 261 aaPredicted RBP4.79□□□□□ -1.64
UPF2-201ENST00000356352 XAGE1AQ9HD64 81 aa4.79□□□□□ -1.64
UPF2-201ENST00000356352 EP300Q09472 2414 aaPredicted RBP4.79□□□□□ -1.64
UPF2-201ENST00000356352 FRMD6-AS1P0C7T7 363 aa4.79□□□□□ -1.64
UPF2-201ENST00000356352 KPRPQ5T749 579 aaPredicted RBP4.79□□□□□ -1.64
UPF2-201ENST00000356352 GDF5OSQ5U4N7 250 aa4.79□□□□□ -1.64
UPF2-201ENST00000356352 RNF185Q96GF1 192 aa4.79□□□□□ -1.64
UPF2-201ENST00000356352 SERP2Q8N6R1 65 aa4.78□□□□□ -1.64
UPF2-201ENST00000356352 PLAC8L1A1L4L8 177 aa4.78□□□□□ -1.64
UPF2-201ENST00000356352 LY6G6DO95868 133 aa4.78□□□□□ -1.64
UPF2-201ENST00000356352 TSHBP01222 138 aa4.78□□□□□ -1.64
UPF2-201ENST00000356352 LINC00482Q8N8I6 264 aa4.78□□□□□ -1.64
UPF2-201ENST00000356352 CEP250Q9BV73 2442 aa4.78□□□□□ -1.64
UPF2-201ENST00000356352 DENND4AQ7Z401 1863 aa4.78□□□□□ -1.64
UPF2-201ENST00000356352 LINC00959A0A1B0GUT2 108 aa4.78□□□□□ -1.64
UPF2-201ENST00000356352 Q8IZM0 81 aa4.78□□□□□ -1.64
UPF2-201ENST00000356352 NUPR2A6NF83 97 aa4.78□□□□□ -1.64
UPF2-201ENST00000356352 MT-ATP8P03928 68 aa4.78□□□□□ -1.64
UPF2-201ENST00000356352 UBE2D2P62837 147 aa4.78□□□□□ -1.64
UPF2-201ENST00000356352 CHCHD7Q9BUK0 85 aa4.78□□□□□ -1.64
UPF2-201ENST00000356352 IGKV2-28A0A075B6P5 120 aa4.77□□□□□ -1.65
UPF2-201ENST00000356352 C3orf84H3BNL1 204 aa4.77□□□□□ -1.65
UPF2-201ENST00000356352 IGKV2D-28P01615 120 aa4.77□□□□□ -1.65
UPF2-201ENST00000356352 BRWD1-AS2P59051 145 aa4.77□□□□□ -1.65
UPF2-201ENST00000356352 C10orf25Q5T742 122 aa4.77□□□□□ -1.65
UPF2-201ENST00000356352 DOCK8Q8NF50 2099 aa4.77□□□□□ -1.65
UPF2-201ENST00000356352 ZNF73O43830 326 aaPredicted RBP4.77□□□□□ -1.65
UPF2-201ENST00000356352 NDUFA7O95182 113 aa4.77□□□□□ -1.65
UPF2-201ENST00000356352 Q8N6K4 173 aa4.77□□□□□ -1.65
UPF2-201ENST00000356352 F8WDY8 70 aa4.77□□□□□ -1.65
UPF2-201ENST00000356352 RPL28P46779 137 aaKnown RBP4.77□□□□□ -1.65
UPF2-201ENST00000356352 Q6ZQY7 126 aa4.77□□□□□ -1.65
UPF2-201ENST00000356352 ZNF843Q8N446 348 aa4.77□□□□□ -1.65
UPF2-201ENST00000356352 DCANP1Q8TF63 244 aa4.77□□□□□ -1.65
UPF2-201ENST00000356352 DOCK9Q9BZ29 2069 aa4.77□□□□□ -1.65
UPF2-201ENST00000356352 KLLNB2CW77 178 aa4.77□□□□□ -1.65
UPF2-201ENST00000356352 LST1O00453 97 aa4.77□□□□□ -1.65
UPF2-201ENST00000356352 SPINK6Q6UWN8 80 aa4.76□□□□□ -1.65
UPF2-201ENST00000356352 ZNF407Q9C0G0 2248 aa4.76□□□□□ -1.65
UPF2-201ENST00000356352 PLXNB3Q9ULL4 1909 aa4.76□□□□□ -1.65
UPF2-201ENST00000356352 CEP290O15078 2479 aa4.76□□□□□ -1.65
UPF2-201ENST00000356352 AKAP6Q13023 2319 aa4.76□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms