RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 SIGMAR1Q99720 223 aa6.53□□□□□ -1.36
USP4-202ENST00000351842 DPH3P1Q9H4G8 78 aa6.53□□□□□ -1.36
USP4-202ENST00000351842 A8MZ25 164 aa6.52□□□□□ -1.37
USP4-202ENST00000351842 SNAI2O43623 268 aa6.52□□□□□ -1.37
USP4-202ENST00000351842 CRYGDP07320 174 aa6.52□□□□□ -1.37
USP4-202ENST00000351842 SPXQ9BT56 116 aa6.52□□□□□ -1.37
USP4-202ENST00000351842 HHLA3Q9XRX5 114 aa6.52□□□□□ -1.37
USP4-202ENST00000351842 SMIM9A6NGZ8 99 aa6.52□□□□□ -1.37
USP4-202ENST00000351842 ATP5G1P05496 136 aa6.52□□□□□ -1.37
USP4-202ENST00000351842 GYPEP15421 78 aa6.52□□□□□ -1.37
USP4-202ENST00000351842 PMCHP20382 165 aa6.52□□□□□ -1.37
USP4-202ENST00000351842 CACNG7P62955 275 aa6.52□□□□□ -1.37
USP4-202ENST00000351842 RASL10AQ92737 203 aa6.52□□□□□ -1.37
USP4-202ENST00000351842 SCRT2Q9NQ03 307 aa6.52□□□□□ -1.37
USP4-202ENST00000351842 A0A1B0GW15 77 aa6.51□□□□□ -1.37
USP4-202ENST00000351842 A8MWV9 139 aa6.51□□□□□ -1.37
USP4-202ENST00000351842 PAX4O43316 350 aa6.51□□□□□ -1.37
USP4-202ENST00000351842 NPYP01303 97 aa6.51□□□□□ -1.37
USP4-202ENST00000351842 DAZ2Q13117 558 aaKnown RBP6.51□□□□□ -1.37
USP4-202ENST00000351842 FAM104BQ5XKR9 115 aa6.51□□□□□ -1.37
USP4-202ENST00000351842 PRELID3AQ96N28 172 aa6.51□□□□□ -1.37
USP4-202ENST00000351842 SS18L2Q9UHA2 77 aa6.51□□□□□ -1.37
USP4-202ENST00000351842 TRAV9-2A0A087WT02 112 aa6.51□□□□□ -1.37
USP4-202ENST00000351842 H0Y8G0 127 aa6.5□□□□□ -1.37
USP4-202ENST00000351842 RNASEKQ6P5S7 137 aaKnown RBP6.5□□□□□ -1.37
USP4-202ENST00000351842 TNFRSF18Q9Y5U5 241 aa6.5□□□□□ -1.37
USP4-202ENST00000351842 FAM19A2Q8N3H0 131 aa6.5□□□□□ -1.37
USP4-202ENST00000351842 GEMIN7Q9H840 131 aaKnown RBP6.5□□□□□ -1.37
USP4-202ENST00000351842 SPATA12Q7Z6I5 190 aa6.5□□□□□ -1.37
USP4-202ENST00000351842 TMEM191AQ9H0A3 160 aa6.5□□□□□ -1.37
USP4-202ENST00000351842 TP53TG1Q9Y2A0 90 aa6.5□□□□□ -1.37
USP4-202ENST00000351842 IGKV3OR2-268A0A0C4DH90 116 aa6.49□□□□□ -1.37
USP4-202ENST00000351842 LYRM9A8MSI8 78 aa6.49□□□□□ -1.37
USP4-202ENST00000351842 ORMDL3Q8N138 153 aa6.49□□□□□ -1.37
USP4-202ENST00000351842 RNF185Q96GF1 192 aa6.49□□□□□ -1.37
USP4-202ENST00000351842 TRAV8-6A0A0B4J262 113 aa6.49□□□□□ -1.37
USP4-202ENST00000351842 GAGE10A6NGK3 116 aa6.49□□□□□ -1.37
USP4-202ENST00000351842 HSBP1O75506 76 aa6.49□□□□□ -1.37
USP4-202ENST00000351842 MPV17L2Q567V2 206 aa6.49□□□□□ -1.37
USP4-202ENST00000351842 BOD1L2Q8IYS8 172 aa6.49□□□□□ -1.37
USP4-202ENST00000351842 PRSS3P2Q8NHM4 247 aa6.49□□□□□ -1.37
USP4-202ENST00000351842 TRAV4A0A0B4J268 109 aa6.48□□□□□ -1.37
USP4-202ENST00000351842 IGHV1-24A0A0C4DH33 117 aa6.48□□□□□ -1.37
USP4-202ENST00000351842 FHL2Q14192 279 aa6.48□□□□□ -1.37
USP4-202ENST00000351842 ATOH7Q8N100 152 aa6.48□□□□□ -1.37
USP4-202ENST00000351842 TMEM70Q9BUB7 260 aa6.48□□□□□ -1.37
USP4-202ENST00000351842 ST20Q9HBF5 79 aa6.48□□□□□ -1.37
USP4-202ENST00000351842 TNFRSF6BO95407 300 aa6.48□□□□□ -1.37
USP4-202ENST00000351842 IFI27P40305 119 aaPredicted RBP6.48□□□□□ -1.37
USP4-202ENST00000351842 LGALS9BQ3B8N2 356 aa6.48□□□□□ -1.37
USP4-202ENST00000351842 SDHAF1A6NFY7 115 aa6.48□□□□□ -1.37
USP4-202ENST00000351842 SYS1-DBNDD2H3BUS1 97 aa6.47□□□□□ -1.37
USP4-202ENST00000351842 K7EQD1 137 aa6.47□□□□□ -1.37
USP4-202ENST00000351842 LINC00315P59091 139 aa6.47□□□□□ -1.37
USP4-202ENST00000351842 PET117Q6UWS5 81 aa6.47□□□□□ -1.37
USP4-202ENST00000351842 LINC01546A6NGU7 62 aa6.47□□□□□ -1.37
USP4-202ENST00000351842 TMEM262E9PQX1 116 aa6.47□□□□□ -1.37
USP4-202ENST00000351842 RS1O15537 224 aa6.47□□□□□ -1.37
USP4-202ENST00000351842 GTF2H5Q6ZYL4 71 aa6.47□□□□□ -1.37
USP4-202ENST00000351842 IL17DQ8TAD2 202 aa6.47□□□□□ -1.37
USP4-202ENST00000351842 CNFNQ9BYD5 112 aa6.47□□□□□ -1.37
USP4-202ENST00000351842 KIF25-AS1Q9Y6Z4 181 aa6.47□□□□□ -1.37
USP4-202ENST00000351842 M0QY20 66 aa6.46□□□□□ -1.37
USP4-202ENST00000351842 SIVA1O15304 175 aa6.46□□□□□ -1.37
USP4-202ENST00000351842 TSPAN13O95857 204 aa6.46□□□□□ -1.37
USP4-202ENST00000351842 RNASE13Q5GAN3 156 aaKnown RBP6.46□□□□□ -1.37
USP4-202ENST00000351842 MRAP2Q96G30 205 aa6.46□□□□□ -1.37
USP4-202ENST00000351842 C18orf15Q96N68 181 aa6.46□□□□□ -1.37
USP4-202ENST00000351842 PRADC1Q9BSG0 188 aa6.46□□□□□ -1.37
USP4-202ENST00000351842 PRO0255Q9UI72 69 aa6.46□□□□□ -1.37
USP4-202ENST00000351842 MED14OSP0DP75 135 aa6.46□□□□□ -1.38
USP4-202ENST00000351842 FCER1GP30273 86 aa6.46□□□□□ -1.38
USP4-202ENST00000351842 RPL36AP83881 106 aaKnown RBP6.46□□□□□ -1.38
USP4-202ENST00000351842 HSD52Q0P140 79 aa6.46□□□□□ -1.38
USP4-202ENST00000351842 LINC01545Q5VT33 79 aa6.46□□□□□ -1.38
USP4-202ENST00000351842 CLPSL2Q6UWE3 100 aa6.46□□□□□ -1.38
USP4-202ENST00000351842 NEXN-AS1Q8NBZ9 246 aa6.46□□□□□ -1.38
USP4-202ENST00000351842 RPL36ALQ969Q0 106 aaKnown RBP6.46□□□□□ -1.38
USP4-202ENST00000351842 STARD9Q9P2P6 4700 aa6.46□□□□□ -1.38
USP4-202ENST00000351842 RHODO00212 210 aa6.46□□□□□ -1.38
USP4-202ENST00000351842 Q8N3U1 123 aa6.46□□□□□ -1.38
USP4-202ENST00000351842 VSIG2Q96IQ7 327 aa6.46□□□□□ -1.38
USP4-202ENST00000351842 CEMP1Q6PRD7 247 aaPredicted RBP6.45□□□□□ -1.38
USP4-202ENST00000351842 FA2HQ7L5A8 372 aa6.45□□□□□ -1.38
USP4-202ENST00000351842 LINC00467Q9BRT7 94 aa6.45□□□□□ -1.38
USP4-202ENST00000351842 IGKV2D-29A0A075B6S2 120 aaPredicted RBP6.45□□□□□ -1.38
USP4-202ENST00000351842 IGKV2-29A2NJV5 120 aaPredicted RBP6.45□□□□□ -1.38
USP4-202ENST00000351842 NHLRC4P0CG21 123 aaPredicted RBP6.45□□□□□ -1.38
USP4-202ENST00000351842 SUMO2P61956 95 aaKnown RBP6.45□□□□□ -1.38
USP4-202ENST00000351842 RPL24P83731 157 aaKnown RBP6.45□□□□□ -1.38
USP4-202ENST00000351842 RHOHQ15669 191 aa6.45□□□□□ -1.38
USP4-202ENST00000351842 BVES-AS1Q5T3Y7 98 aa6.45□□□□□ -1.38
USP4-202ENST00000351842 MTURNQ8N3F0 131 aa6.45□□□□□ -1.38
USP4-202ENST00000351842 EDA2RQ9HAV5 297 aa6.45□□□□□ -1.38
USP4-202ENST00000351842 CHCHD5Q9BSY4 110 aa6.44□□□□□ -1.38
USP4-202ENST00000351842 MAP1LC3AQ9H492 121 aa6.44□□□□□ -1.38
USP4-202ENST00000351842 IGLV2-18A0A075B6J9 118 aa6.44□□□□□ -1.38
USP4-202ENST00000351842 IGHV4-4A0A075B6R2 117 aa6.44□□□□□ -1.38
USP4-202ENST00000351842 GAGE12HA6NDE8 117 aa6.44□□□□□ -1.38
USP4-202ENST00000351842 H7C1H1 209 aa6.44□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 106.1 ms