RNA–Protein interactions for RNA: ENST00000324554.9

USHBP1-202, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 2,402 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-202ENST00000324554 CFC1P0CG37 223 aa11.78□□□□□ -0.52
USHBP1-202ENST00000324554 PSMB2P49721 201 aa11.78□□□□□ -0.52
USHBP1-202ENST00000324554 NFE4Q86UQ8 179 aa11.78□□□□□ -0.52
USHBP1-202ENST00000324554 SIGMAR1Q99720 223 aa11.78□□□□□ -0.52
USHBP1-202ENST00000324554 Q8N2B8 174 aa11.77□□□□□ -0.52
USHBP1-202ENST00000324554 C11orf44Q8N8P7 122 aa11.77□□□□□ -0.52
USHBP1-202ENST00000324554 DUX3Q96PT4 197 aa11.77□□□□□ -0.52
USHBP1-202ENST00000324554 I3L3M4 83 aa11.77□□□□□ -0.53
USHBP1-202ENST00000324554 HTN1P15515 57 aa11.77□□□□□ -0.53
USHBP1-202ENST00000324554 SMAGPQ0VAQ4 97 aa11.77□□□□□ -0.53
USHBP1-202ENST00000324554 C20orf203Q8NBC4 194 aa11.77□□□□□ -0.53
USHBP1-202ENST00000324554 SPATA25Q9BR10 227 aa11.77□□□□□ -0.53
USHBP1-202ENST00000324554 A8MTW9 85 aa11.76□□□□□ -0.53
USHBP1-202ENST00000324554 KHDC1LQ5JSQ8 128 aa11.76□□□□□ -0.53
USHBP1-202ENST00000324554 RBMY1BA6NDE4 496 aaKnown RBP11.76□□□□□ -0.53
USHBP1-202ENST00000324554 RBMY1EA6NEQ0 496 aaKnown RBP11.76□□□□□ -0.53
USHBP1-202ENST00000324554 H3BMM0 161 aa11.76□□□□□ -0.53
USHBP1-202ENST00000324554 RBMY1DP0C7P1 496 aaKnown RBP11.76□□□□□ -0.53
USHBP1-202ENST00000324554 LGALS3P17931 250 aaKnown RBP11.76□□□□□ -0.53
USHBP1-202ENST00000324554 IGHV3-64A0A075B6Q5 118 aa11.75□□□□□ -0.53
USHBP1-202ENST00000324554 TMEM223A0PJW6 202 aa11.75□□□□□ -0.53
USHBP1-202ENST00000324554 TMEM61Q8N0U2 210 aa11.75□□□□□ -0.53
USHBP1-202ENST00000324554 IGLV4-3A0A075B6K6 122 aa11.74□□□□□ -0.53
USHBP1-202ENST00000324554 ZNF22P17026 224 aaPredicted RBP11.74□□□□□ -0.53
USHBP1-202ENST00000324554 ZNF418Q8TF45 676 aaPredicted RBP11.74□□□□□ -0.53
USHBP1-202ENST00000324554 C1QTNF4Q9BXJ3 329 aa11.74□□□□□ -0.53
USHBP1-202ENST00000324554 IGHV3-73A0A0B4J1V6 119 aa11.74□□□□□ -0.53
USHBP1-202ENST00000324554 A0A0J9YXV3 536 aa11.74□□□□□ -0.53
USHBP1-202ENST00000324554 TCL1BO95988 128 aa11.74□□□□□ -0.53
USHBP1-202ENST00000324554 PRM2P04554 102 aa11.74□□□□□ -0.53
USHBP1-202ENST00000324554 FOXI1Q12951 378 aa11.74□□□□□ -0.53
USHBP1-202ENST00000324554 Q6ZSV7 163 aa11.74□□□□□ -0.53
USHBP1-202ENST00000324554 PTH2Q96A98 100 aa11.74□□□□□ -0.53
USHBP1-202ENST00000324554 EDA2RQ9HAV5 297 aa11.74□□□□□ -0.53
USHBP1-202ENST00000324554 HIVEP2P31629 2446 aa11.73□□□□□ -0.53
USHBP1-202ENST00000324554 RHODO00212 210 aa11.73□□□□□ -0.53
USHBP1-202ENST00000324554 LEPROTO15243 131 aa11.73□□□□□ -0.53
USHBP1-202ENST00000324554 EIF4EBP3O60516 100 aaPredicted RBP11.73□□□□□ -0.53
USHBP1-202ENST00000324554 PROK1P58294 105 aa11.73□□□□□ -0.53
USHBP1-202ENST00000324554 C10orf126Q8N4M7 172 aa11.73□□□□□ -0.53
USHBP1-202ENST00000324554 C4orf3Q8WVX3 66 aa11.73□□□□□ -0.53
USHBP1-202ENST00000324554 PEMTQ9UBM1 199 aa11.73□□□□□ -0.53
USHBP1-202ENST00000324554 TRAV2A0A0B4J234 112 aa11.72□□□□□ -0.53
USHBP1-202ENST00000324554 FAM104AQ969W3 186 aa11.72□□□□□ -0.53
USHBP1-202ENST00000324554 ANK3Q12955 4377 aaKnown RBP11.72□□□□□ -0.53
USHBP1-202ENST00000324554 PRO1854Q9UHT4 67 aa11.71□□□□□ -0.53
USHBP1-202ENST00000324554 A4D1N5 150 aa11.71□□□□□ -0.54
USHBP1-202ENST00000324554 VCX2Q9H322 139 aa11.71□□□□□ -0.54
USHBP1-202ENST00000324554 MAP6D1Q9H9H5 199 aa11.71□□□□□ -0.54
USHBP1-202ENST00000324554 Q9UF83 564 aa11.71□□□□□ -0.54
USHBP1-202ENST00000324554 ATP6V0E2Q8NHE4 81 aa11.7□□□□□ -0.54
USHBP1-202ENST00000324554 A0A1W2PRX2 142 aa11.7□□□□□ -0.54
USHBP1-202ENST00000324554 M0R2P5 195 aa11.7□□□□□ -0.54
USHBP1-202ENST00000324554 CEMP1Q6PRD7 247 aaPredicted RBP11.7□□□□□ -0.54
USHBP1-202ENST00000324554 WNK1Q9H4A3 2382 aa11.7□□□□□ -0.54
USHBP1-202ENST00000324554 NACAE9PAV3 2078 aa11.69□□□□□ -0.54
USHBP1-202ENST00000324554 A8MWV9 139 aa11.69□□□□□ -0.54
USHBP1-202ENST00000324554 SCGB1A1P11684 91 aa11.69□□□□□ -0.54
USHBP1-202ENST00000324554 LYRM7Q5U5X0 104 aa11.69□□□□□ -0.54
USHBP1-202ENST00000324554 DYNLRB2Q8TF09 96 aa11.69□□□□□ -0.54
USHBP1-202ENST00000324554 RAX2Q96IS3 184 aa11.69□□□□□ -0.54
USHBP1-202ENST00000324554 LY6G6DO95868 133 aa11.68□□□□□ -0.54
USHBP1-202ENST00000324554 ZNF415Q09FC8 603 aa11.68□□□□□ -0.54
USHBP1-202ENST00000324554 FHL3Q13643 280 aa11.68□□□□□ -0.54
USHBP1-202ENST00000324554 DEFB114Q30KQ6 69 aa11.68□□□□□ -0.54
USHBP1-202ENST00000324554 RNASE13Q5GAN3 156 aaKnown RBP11.68□□□□□ -0.54
USHBP1-202ENST00000324554 PIK3CD-AS1Q5SR53 167 aa11.68□□□□□ -0.54
USHBP1-202ENST00000324554 MUSTN1Q8IVN3 82 aa11.68□□□□□ -0.54
USHBP1-202ENST00000324554 CARD19Q96LW7 228 aa11.68□□□□□ -0.54
USHBP1-202ENST00000324554 NIPBLQ6KC79 2804 aaeCLIP11.68□□□□□ -0.54
USHBP1-202ENST00000324554 FLNBO75369 2602 aaKnown RBP11.67□□□□□ -0.54
USHBP1-202ENST00000324554 TRBV20-1A0A075B6N2 111 aa11.67□□□□□ -0.54
USHBP1-202ENST00000324554 CD28P10747 220 aa11.67□□□□□ -0.54
USHBP1-202ENST00000324554 TEX29Q8N6K0 151 aa11.67□□□□□ -0.54
USHBP1-202ENST00000324554 SPXQ9BT56 116 aa11.67□□□□□ -0.54
USHBP1-202ENST00000324554 PYGO1Q9Y3Y4 419 aa11.67□□□□□ -0.54
USHBP1-202ENST00000324554 ADARB2-AS1A8MUL3 147 aa11.67□□□□□ -0.54
USHBP1-202ENST00000324554 Q6ZSN1 163 aa11.67□□□□□ -0.54
USHBP1-202ENST00000324554 C11orf72Q8NBR9 251 aa11.67□□□□□ -0.54
USHBP1-202ENST00000324554 TMEM263Q8WUH6 116 aaKnown RBP11.67□□□□□ -0.54
USHBP1-202ENST00000324554 CDIP1Q9H305 208 aa11.67□□□□□ -0.54
USHBP1-202ENST00000324554 TNFRSF18Q9Y5U5 241 aa11.67□□□□□ -0.54
USHBP1-202ENST00000324554 IGHV3-33P01772 117 aa11.66□□□□□ -0.54
USHBP1-202ENST00000324554 SCGB1C2P0DMR2 95 aa11.66□□□□□ -0.54
USHBP1-202ENST00000324554 TMEM86BQ8N661 226 aa11.66□□□□□ -0.54
USHBP1-202ENST00000324554 SETXQ7Z333 2677 aaKnown RBP11.66□□□□□ -0.54
USHBP1-202ENST00000324554 A0A0J9YXY3 114 aa11.66□□□□□ -0.54
USHBP1-202ENST00000324554 IGHV3-30-3P0DP02 117 aa11.66□□□□□ -0.54
USHBP1-202ENST00000324554 TEN1Q86WV5 123 aa11.66□□□□□ -0.54
USHBP1-202ENST00000324554 SBSPONQ8IVN8 264 aa11.66□□□□□ -0.54
USHBP1-202ENST00000324554 TRAV8-3A0A0A6YYJ7 113 aa11.65□□□□□ -0.54
USHBP1-202ENST00000324554 LINC01587Q99440 93 aa11.65□□□□□ -0.54
USHBP1-202ENST00000324554 HIVEP1P15822 2718 aa11.65□□□□□ -0.54
USHBP1-202ENST00000324554 H7C2G1 150 aa11.65□□□□□ -0.55
USHBP1-202ENST00000324554 MRPS36P82909 103 aaKnown RBP11.65□□□□□ -0.55
USHBP1-202ENST00000324554 LINC00467Q9BRT7 94 aa11.65□□□□□ -0.55
USHBP1-202ENST00000324554 INSP01308 110 aa11.64□□□□□ -0.55
USHBP1-202ENST00000324554 TIMM21Q9BVV7 248 aa11.64□□□□□ -0.55
USHBP1-202ENST00000324554 A0A0B4J2C4 111 aa11.63□□□□□ -0.55
USHBP1-202ENST00000324554 PPDPFLQ8WWR9 84 aa11.63□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms