RNA–Protein interactions for RNA: ENST00000315286.12

CCDC43-201, Transcript of coiled-coil domain containing 43, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CCDC43, Length 2,082 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-201ENST00000315286 C11orf86A6NJI1 115 aa13.16□□□□□ -0.3
CCDC43-201ENST00000315286 RRN3P1Q2M238 152 aa13.16□□□□□ -0.3
CCDC43-201ENST00000315286 IGHV3-38A0A0C4DH36 116 aa13.15□□□□□ -0.3
CCDC43-201ENST00000315286 Q6ZVH6 145 aa13.15□□□□□ -0.3
CCDC43-201ENST00000315286 PHLDA1Q8WV24 401 aaPredicted RBP13.15□□□□□ -0.3
CCDC43-201ENST00000315286 TRAV4A0A0B4J268 109 aa13.14□□□□□ -0.31
CCDC43-201ENST00000315286 ZNF25P17030 456 aaPredicted RBP13.14□□□□□ -0.31
CCDC43-201ENST00000315286 CHCHD7Q9BUK0 85 aa13.14□□□□□ -0.31
CCDC43-201ENST00000315286 TRBV25-1A0A075B6N4 114 aa13.13□□□□□ -0.31
CCDC43-201ENST00000315286 OVOL2Q9BRP0 275 aa13.13□□□□□ -0.31
CCDC43-201ENST00000315286 ZMAT5Q9UDW3 170 aaKnown RBP13.13□□□□□ -0.31
CCDC43-201ENST00000315286 TRRAPQ9Y4A5 3859 aa13.13□□□□□ -0.31
CCDC43-201ENST00000315286 IGLV4-3A0A075B6K6 122 aa13.12□□□□□ -0.31
CCDC43-201ENST00000315286 GAGE12BA1L429 117 aa13.12□□□□□ -0.31
CCDC43-201ENST00000315286 GAGE7O76087 117 aa13.12□□□□□ -0.31
CCDC43-201ENST00000315286 GAGE12FP0CL80 117 aa13.12□□□□□ -0.31
CCDC43-201ENST00000315286 GAGE12GP0CL81 117 aa13.12□□□□□ -0.31
CCDC43-201ENST00000315286 GAGE12IP0CL82 117 aa13.12□□□□□ -0.31
CCDC43-201ENST00000315286 PAPPA-AS1Q5QFB9 102 aa13.12□□□□□ -0.31
CCDC43-201ENST00000315286 ZNRF2Q8NHG8 242 aa13.12□□□□□ -0.31
CCDC43-201ENST00000315286 HSD52Q0P140 79 aa13.12□□□□□ -0.31
CCDC43-201ENST00000315286 FAM104AQ969W3 186 aa13.12□□□□□ -0.31
CCDC43-201ENST00000315286 HIGD1BQ9P298 99 aa13.12□□□□□ -0.31
CCDC43-201ENST00000315286 E9PLD3 99 aa13.11□□□□□ -0.31
CCDC43-201ENST00000315286 CEMP1Q6PRD7 247 aaPredicted RBP13.11□□□□□ -0.31
CCDC43-201ENST00000315286 OR11H2Q8NH07 326 aa13.11□□□□□ -0.31
CCDC43-201ENST00000315286 PYGO1Q9Y3Y4 419 aa13.11□□□□□ -0.31
CCDC43-201ENST00000315286 COTL1Q14019 142 aa13.11□□□□□ -0.31
CCDC43-201ENST00000315286 SLC25A29Q8N8R3 303 aa13.11□□□□□ -0.31
CCDC43-201ENST00000315286 PRADC1Q9BSG0 188 aa13.11□□□□□ -0.31
CCDC43-201ENST00000315286 VCX2Q9H322 139 aa13.11□□□□□ -0.31
CCDC43-201ENST00000315286 TRBV7-3A0A075B6L6 115 aa13.1□□□□□ -0.31
CCDC43-201ENST00000315286 TRGV2A0A075B6R0 118 aa13.1□□□□□ -0.31
CCDC43-201ENST00000315286 K7EQD1 137 aa13.1□□□□□ -0.31
CCDC43-201ENST00000315286 CHAC1Q9BUX1 264 aa13.09□□□□□ -0.31
CCDC43-201ENST00000315286 IGKV2D-29A0A075B6S2 120 aaPredicted RBP13.09□□□□□ -0.31
CCDC43-201ENST00000315286 TRBV10-1A0A0K0K1A3 114 aa13.09□□□□□ -0.31
CCDC43-201ENST00000315286 IGKV2-29A2NJV5 120 aaPredicted RBP13.09□□□□□ -0.31
CCDC43-201ENST00000315286 ORAOV1Q8WV07 137 aa13.09□□□□□ -0.31
CCDC43-201ENST00000315286 COX11Q9Y6N1 276 aa13.09□□□□□ -0.31
CCDC43-201ENST00000315286 TAX1BP3O14907 124 aa13.08□□□□□ -0.32
CCDC43-201ENST00000315286 NFE4Q86UQ8 179 aa13.08□□□□□ -0.32
CCDC43-201ENST00000315286 NBEAL2Q6ZNJ1 2754 aa13.08□□□□□ -0.32
CCDC43-201ENST00000315286 SEC11AP67812 179 aa13.08□□□□□ -0.32
CCDC43-201ENST00000315286 RPL36AP83881 106 aaKnown RBP13.08□□□□□ -0.32
CCDC43-201ENST00000315286 TMEM170BQ5T4T1 132 aa13.08□□□□□ -0.32
CCDC43-201ENST00000315286 LINC00469Q8N7U9 141 aa13.08□□□□□ -0.32
CCDC43-201ENST00000315286 RPL36ALQ969Q0 106 aaKnown RBP13.08□□□□□ -0.32
CCDC43-201ENST00000315286 UBE2D4Q9Y2X8 147 aa13.08□□□□□ -0.32
CCDC43-201ENST00000315286 MYMXA0A1B0GTQ4 84 aa13.07□□□□□ -0.32
CCDC43-201ENST00000315286 WFDC9Q8NEX5 89 aa13.07□□□□□ -0.32
CCDC43-201ENST00000315286 AMELXQ99217 191 aa13.07□□□□□ -0.32
CCDC43-201ENST00000315286 A0A0J9YXV3 536 aa13.06□□□□□ -0.32
CCDC43-201ENST00000315286 RNASE13Q5GAN3 156 aaKnown RBP13.06□□□□□ -0.32
CCDC43-201ENST00000315286 GAGE12JA6NER3 117 aa13.05□□□□□ -0.32
CCDC43-201ENST00000315286 HERVK_113P61574 105 aa13.05□□□□□ -0.32
CCDC43-201ENST00000315286 GAGE1Q13065 139 aa13.05□□□□□ -0.32
CCDC43-201ENST00000315286 GAGE4Q13068 117 aa13.05□□□□□ -0.32
CCDC43-201ENST00000315286 GAGE5Q13069 117 aa13.05□□□□□ -0.32
CCDC43-201ENST00000315286 GAGE13Q4V321 117 aa13.05□□□□□ -0.32
CCDC43-201ENST00000315286 SPANXA1Q9NS26 97 aa13.05□□□□□ -0.32
CCDC43-201ENST00000315286 UBE2D3P61077 147 aa13.04□□□□□ -0.32
CCDC43-201ENST00000315286 UBE2D2P62837 147 aa13.04□□□□□ -0.32
CCDC43-201ENST00000315286 X6R8D5 127 aa13.04□□□□□ -0.32
CCDC43-201ENST00000315286 NPSP0C0P6 89 aa13.04□□□□□ -0.32
CCDC43-201ENST00000315286 CRYBA4P53673 196 aa13.04□□□□□ -0.32
CCDC43-201ENST00000315286 CIDEAO60543 219 aa13.03□□□□□ -0.32
CCDC43-201ENST00000315286 GCSHP23434 173 aa13.03□□□□□ -0.32
CCDC43-201ENST00000315286 DAZ4Q86SG3 579 aaKnown RBP13.03□□□□□ -0.32
CCDC43-201ENST00000315286 DAZ3Q9NR90 486 aaKnown RBP13.03□□□□□ -0.32
CCDC43-201ENST00000315286 TRGV4A0A0C4DH28 118 aa13.03□□□□□ -0.32
CCDC43-201ENST00000315286 ZNF815PA8K554 130 aa13.03□□□□□ -0.32
CCDC43-201ENST00000315286 NTM-AS1Q6ZSK4 140 aa13.03□□□□□ -0.32
CCDC43-201ENST00000315286 LOC100131303A0A0U1RQF7 123 aa13.02□□□□□ -0.33
CCDC43-201ENST00000315286 TRBV6-4A0A1B0GX49 114 aa13.02□□□□□ -0.33
CCDC43-201ENST00000315286 K7EP13 123 aa13.02□□□□□ -0.33
CCDC43-201ENST00000315286 ZNF22P17026 224 aaPredicted RBP13.02□□□□□ -0.33
CCDC43-201ENST00000315286 FHL2Q14192 279 aa13.02□□□□□ -0.33
CCDC43-201ENST00000315286 Q6ZUT4 128 aa13.02□□□□□ -0.33
CCDC43-201ENST00000315286 A6NDN8 102 aa13.01□□□□□ -0.33
CCDC43-201ENST00000315286 FXYD2P54710 66 aa13.01□□□□□ -0.33
CCDC43-201ENST00000315286 TMEM223A0PJW6 202 aa13.01□□□□□ -0.33
CCDC43-201ENST00000315286 DEFB130BP0DP73 79 aa13.01□□□□□ -0.33
CCDC43-201ENST00000315286 DEFB130AP0DP74 79 aa13.01□□□□□ -0.33
CCDC43-201ENST00000315286 TSPEAR-AS2P59090 65 aa13.01□□□□□ -0.33
CCDC43-201ENST00000315286 KIR2DL5BQ8NHK3 375 aa13.01□□□□□ -0.33
CCDC43-201ENST00000315286 SMIM9A6NGZ8 99 aa13□□□□□ -0.33
CCDC43-201ENST00000315286 MRPS36P82909 103 aaKnown RBP13□□□□□ -0.33
CCDC43-201ENST00000315286 KRTAP24-1Q3LI83 254 aa13□□□□□ -0.33
CCDC43-201ENST00000315286 CEND1Q8N111 149 aa13□□□□□ -0.33
CCDC43-201ENST00000315286 LINC00694P0DN24 101 aa13□□□□□ -0.33
CCDC43-201ENST00000315286 PLEKHB2Q96CS7 222 aa13□□□□□ -0.33
CCDC43-201ENST00000315286 TM2D2Q9BX73 214 aa13□□□□□ -0.33
CCDC43-201ENST00000315286 WIPF1O43516 503 aa12.99□□□□□ -0.33
CCDC43-201ENST00000315286 DEFB135Q30KP9 77 aa12.99□□□□□ -0.33
CCDC43-201ENST00000315286 LINC00612Q8N6U2 182 aa12.99□□□□□ -0.33
CCDC43-201ENST00000315286 TIMM21Q9BVV7 248 aa12.99□□□□□ -0.33
CCDC43-201ENST00000315286 TAL2Q16559 108 aa12.98□□□□□ -0.33
CCDC43-201ENST00000315286 HIST1H4GQ99525 98 aa12.98□□□□□ -0.33
CCDC43-201ENST00000315286 APOC4P55056 127 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms