RNA–Protein interactions for RNA: ENST00000308537.4

PDZRN3-202, Transcript of PDZ domain containing ring finger 3, humanhuman

TSL 1 (best) BASIC

Gene PDZRN3, Length 1,136 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3-202ENST00000308537 C20orf203Q8NBC4 194 aa12.93□□□□□ -0.34
PDZRN3-202ENST00000308537 PGLYRP4Q96LB8 373 aa12.93□□□□□ -0.34
PDZRN3-202ENST00000308537 C1orf43Q9BWL3 253 aa12.93□□□□□ -0.34
PDZRN3-202ENST00000308537 GFRA4Q9GZZ7 299 aa12.93□□□□□ -0.34
PDZRN3-202ENST00000308537 DMBT1Q9UGM3 2413 aaPredicted RBP12.92□□□□□ -0.34
PDZRN3-202ENST00000308537 HERC1Q15751 4861 aa12.92□□□□□ -0.34
PDZRN3-202ENST00000308537 IGHV1-24A0A0C4DH33 117 aa12.92□□□□□ -0.34
PDZRN3-202ENST00000308537 FAM231BA6NCW3 169 aa12.92□□□□□ -0.34
PDZRN3-202ENST00000308537 PKIAP61925 76 aa12.92□□□□□ -0.34
PDZRN3-202ENST00000308537 MIAQ16674 131 aa12.92□□□□□ -0.34
PDZRN3-202ENST00000308537 TSKUQ8WUA8 353 aa12.92□□□□□ -0.34
PDZRN3-202ENST00000308537 FRZBQ92765 325 aa12.92□□□□□ -0.34
PDZRN3-202ENST00000308537 TRAV26-2A0A0B4J265 109 aa12.91□□□□□ -0.34
PDZRN3-202ENST00000308537 ADIRFQ15847 76 aa12.91□□□□□ -0.34
PDZRN3-202ENST00000308537 CRPP02741 224 aa12.9□□□□□ -0.34
PDZRN3-202ENST00000308537 RPL23P62829 140 aaKnown RBP12.9□□□□□ -0.34
PDZRN3-202ENST00000308537 CLPSL2Q6UWE3 100 aa12.9□□□□□ -0.34
PDZRN3-202ENST00000308537 LINC00269Q8N2A0 174 aa12.9□□□□□ -0.34
PDZRN3-202ENST00000308537 DEFB104AQ8WTQ1 72 aa12.9□□□□□ -0.34
PDZRN3-202ENST00000308537 ISOC2Q96AB3 205 aa12.9□□□□□ -0.34
PDZRN3-202ENST00000308537 IGLV4-60A0A075B6I1 120 aa12.89□□□□□ -0.35
PDZRN3-202ENST00000308537 A0A1B0GUV1 79 aa12.89□□□□□ -0.35
PDZRN3-202ENST00000308537 C9JQL5 133 aa12.89□□□□□ -0.35
PDZRN3-202ENST00000308537 SRSF3P84103 164 aaKnown RBP12.89□□□□□ -0.35
PDZRN3-202ENST00000308537 INAFM2P0DMQ5 153 aa12.88□□□□□ -0.35
PDZRN3-202ENST00000308537 RPL39LQ96EH5 51 aaKnown RBP12.88□□□□□ -0.35
PDZRN3-202ENST00000308537 A0A1B0GUT8 65 aa12.87□□□□□ -0.35
PDZRN3-202ENST00000308537 HIGD1CA8MV81 97 aa12.87□□□□□ -0.35
PDZRN3-202ENST00000308537 USP17L23D6RBM5 183 aa12.87□□□□□ -0.35
PDZRN3-202ENST00000308537 CLLU1Q5K131 121 aa12.87□□□□□ -0.35
PDZRN3-202ENST00000308537 TMEM243Q9BU79 118 aa12.87□□□□□ -0.35
PDZRN3-202ENST00000308537 GAS8-AS1O95177 125 aa12.86□□□□□ -0.35
PDZRN3-202ENST00000308537 PRSS1P07477 247 aa12.86□□□□□ -0.35
PDZRN3-202ENST00000308537 REG3AQ06141 175 aa12.86□□□□□ -0.35
PDZRN3-202ENST00000308537 SCXQ7RTU7 201 aa12.86□□□□□ -0.35
PDZRN3-202ENST00000308537 HLA-DQA1P01909 254 aa12.85□□□□□ -0.35
PDZRN3-202ENST00000308537 RIGQ13278 110 aa12.85□□□□□ -0.35
PDZRN3-202ENST00000308537 NAT8BQ9UHF3 227 aa12.85□□□□□ -0.35
PDZRN3-202ENST00000308537 V9GYV3 84 aa12.85□□□□□ -0.35
PDZRN3-202ENST00000308537 COTL1Q14019 142 aa12.83□□□□□ -0.36
PDZRN3-202ENST00000308537 C14orf177Q52M58 125 aa12.83□□□□□ -0.36
PDZRN3-202ENST00000308537 IGLV10-54A0A075B6I4 117 aa12.82□□□□□ -0.36
PDZRN3-202ENST00000308537 FAM229AH3BQW9 127 aa12.82□□□□□ -0.36
PDZRN3-202ENST00000308537 AMTP48728 403 aa12.82□□□□□ -0.36
PDZRN3-202ENST00000308537 KRTAP10-4P60372 401 aaPredicted RBP12.82□□□□□ -0.36
PDZRN3-202ENST00000308537 PNRC1Q12796 327 aaPredicted RBP12.82□□□□□ -0.36
PDZRN3-202ENST00000308537 RNF185Q96GF1 192 aa12.82□□□□□ -0.36
PDZRN3-202ENST00000308537 CHAC1Q9BUX1 264 aa12.82□□□□□ -0.36
PDZRN3-202ENST00000308537 TRBV6-5A0A0K0K1A5 114 aa12.81□□□□□ -0.36
PDZRN3-202ENST00000308537 TMEM191AQ9H0A3 160 aa12.81□□□□□ -0.36
PDZRN3-202ENST00000308537 SDHAF1A6NFY7 115 aa12.8□□□□□ -0.36
PDZRN3-202ENST00000308537 PPP1R2P9O14990 202 aa12.8□□□□□ -0.36
PDZRN3-202ENST00000308537 LINC00528Q8N1L1 170 aa12.8□□□□□ -0.36
PDZRN3-202ENST00000308537 NUP35Q8NFH5 326 aa12.8□□□□□ -0.36
PDZRN3-202ENST00000308537 CIRBP-AS1Q8TBR5 109 aa12.8□□□□□ -0.36
PDZRN3-202ENST00000308537 LRP1Q07954 4544 aaKnown RBP12.8□□□□□ -0.36
PDZRN3-202ENST00000308537 TRAV8-4A0A0B4J246 113 aa12.79□□□□□ -0.36
PDZRN3-202ENST00000308537 A0A1B0GW15 77 aa12.79□□□□□ -0.36
PDZRN3-202ENST00000308537 NCR2O95944 276 aa12.79□□□□□ -0.36
PDZRN3-202ENST00000308537 SMIM27A0A1W2PRY6 76 aa12.78□□□□□ -0.36
PDZRN3-202ENST00000308537 S100A8P05109 93 aa12.78□□□□□ -0.36
PDZRN3-202ENST00000308537 RPS10P46783 165 aaKnown RBP12.78□□□□□ -0.36
PDZRN3-202ENST00000308537 UQCC3Q6UW78 93 aa12.78□□□□□ -0.36
PDZRN3-202ENST00000308537 C9orf163Q8N9P6 203 aa12.78□□□□□ -0.36
PDZRN3-202ENST00000308537 SLPIP03973 132 aa12.77□□□□□ -0.37
PDZRN3-202ENST00000308537 RAB4AP20338 218 aa12.77□□□□□ -0.37
PDZRN3-202ENST00000308537 IFITM2Q01629 132 aa12.77□□□□□ -0.37
PDZRN3-202ENST00000308537 DGAT2L7PQ6IED9 249 aa12.77□□□□□ -0.37
PDZRN3-202ENST00000308537 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.76□□□□□ -0.37
PDZRN3-202ENST00000308537 IGKV2-29A2NJV5 120 aaPredicted RBP12.76□□□□□ -0.37
PDZRN3-202ENST00000308537 UBE2L6O14933 153 aa12.76□□□□□ -0.37
PDZRN3-202ENST00000308537 PPP1R17O96001 155 aa12.76□□□□□ -0.37
PDZRN3-202ENST00000308537 ESDP10768 282 aa12.76□□□□□ -0.37
PDZRN3-202ENST00000308537 POLR2KP53803 58 aaKnown RBP12.76□□□□□ -0.37
PDZRN3-202ENST00000308537 MRAP2Q96G30 205 aa12.76□□□□□ -0.37
PDZRN3-202ENST00000308537 PANO1I0J062 215 aa12.75□□□□□ -0.37
PDZRN3-202ENST00000308537 TSHBP01222 138 aa12.75□□□□□ -0.37
PDZRN3-202ENST00000308537 MT-ND4LP03901 98 aa12.75□□□□□ -0.37
PDZRN3-202ENST00000308537 PKHD1L1Q86WI1 4243 aa12.75□□□□□ -0.37
PDZRN3-202ENST00000308537 AMN1Q8IY45 258 aa12.75□□□□□ -0.37
PDZRN3-202ENST00000308537 ANAPC16Q96DE5 110 aa12.75□□□□□ -0.37
PDZRN3-202ENST00000308537 H7C423 109 aa12.74□□□□□ -0.37
PDZRN3-202ENST00000308537 CNBPP62633 177 aaKnown RBP12.74□□□□□ -0.37
PDZRN3-202ENST00000308537 SDIM1Q6ZPB5 146 aa12.74□□□□□ -0.37
PDZRN3-202ENST00000308537 FAT3Q8TDW7 4589 aa12.74□□□□□ -0.37
PDZRN3-202ENST00000308537 I3L3M4 83 aa12.73□□□□□ -0.37
PDZRN3-202ENST00000308537 APCSP02743 223 aa12.73□□□□□ -0.37
PDZRN3-202ENST00000308537 FGF6P10767 208 aa12.73□□□□□ -0.37
PDZRN3-202ENST00000308537 C15orf56Q8N910 161 aa12.73□□□□□ -0.37
PDZRN3-202ENST00000308537 CLRN3Q8NCR9 226 aa12.73□□□□□ -0.37
PDZRN3-202ENST00000308537 ST20Q9HBF5 79 aa12.73□□□□□ -0.37
PDZRN3-202ENST00000308537 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.73□□□□□ -0.37
PDZRN3-202ENST00000308537 F8W036 122 aa12.72□□□□□ -0.37
PDZRN3-202ENST00000308537 NRACQ8N912 160 aa12.72□□□□□ -0.37
PDZRN3-202ENST00000308537 TRBV27A0A0K0K1C4 114 aa12.71□□□□□ -0.37
PDZRN3-202ENST00000308537 PMCHP20382 165 aa12.71□□□□□ -0.37
PDZRN3-202ENST00000308537 CAMPP49913 170 aa12.71□□□□□ -0.37
PDZRN3-202ENST00000308537 HBBP68871 147 aa12.71□□□□□ -0.37
PDZRN3-202ENST00000308537 TMEM242Q9NWH2 141 aa12.71□□□□□ -0.37
PDZRN3-202ENST00000308537 SMKR1H3BMG3 65 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms