RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 UBE2BP63146 152 aa9.66□□□□□ -0.86
COL3A1-201ENST00000304636 CDKN2A-AS1Q9UH64 79 aa9.66□□□□□ -0.86
COL3A1-201ENST00000304636 ATRXP46100 2492 aa9.66□□□□□ -0.86
COL3A1-201ENST00000304636 LINC00308Q8TCZ7 52 aa9.66□□□□□ -0.86
COL3A1-201ENST00000304636 M0QY20 66 aa9.66□□□□□ -0.86
COL3A1-201ENST00000304636 MP68P56378 58 aa9.66□□□□□ -0.86
COL3A1-201ENST00000304636 TRBV27A0A0K0K1C4 114 aa9.66□□□□□ -0.86
COL3A1-201ENST00000304636 BRK1Q8WUW1 75 aa9.66□□□□□ -0.86
COL3A1-201ENST00000304636 SPART-AS1P0CW21 52 aa9.65□□□□□ -0.86
COL3A1-201ENST00000304636 LINC00467Q9BRT7 94 aa9.65□□□□□ -0.86
COL3A1-201ENST00000304636 MRPS12O15235 138 aaKnown RBP9.65□□□□□ -0.86
COL3A1-201ENST00000304636 RPL18AQ02543 176 aaKnown RBP9.65□□□□□ -0.86
COL3A1-201ENST00000304636 URB1-AS1Q96HZ7 61 aa9.65□□□□□ -0.86
COL3A1-201ENST00000304636 UPK3BQ9BT76 320 aa9.65□□□□□ -0.86
COL3A1-201ENST00000304636 NACAE9PAV3 2078 aa9.65□□□□□ -0.87
COL3A1-201ENST00000304636 TRBV6-5A0A0K0K1A5 114 aa9.65□□□□□ -0.87
COL3A1-201ENST00000304636 HIGD2BQ4VC39 106 aa9.65□□□□□ -0.87
COL3A1-201ENST00000304636 ATP5EP2Q5VTU8 51 aa9.65□□□□□ -0.87
COL3A1-201ENST00000304636 UFSP1Q6NVU6 142 aa9.65□□□□□ -0.87
COL3A1-201ENST00000304636 SDIM1Q6ZPB5 146 aa9.65□□□□□ -0.87
COL3A1-201ENST00000304636 TRAV23DV6A0A075B6W5 121 aa9.64□□□□□ -0.87
COL3A1-201ENST00000304636 SPAG11BQ08648 103 aa9.64□□□□□ -0.87
COL3A1-201ENST00000304636 IMUPQ9GZP8 106 aa9.64□□□□□ -0.87
COL3A1-201ENST00000304636 MAP6D1Q9H9H5 199 aa9.64□□□□□ -0.87
COL3A1-201ENST00000304636 K7EQG2 157 aa9.64□□□□□ -0.87
COL3A1-201ENST00000304636 PYGO1Q9Y3Y4 419 aa9.64□□□□□ -0.87
COL3A1-201ENST00000304636 PCNX2A6NKB5 2137 aa9.64□□□□□ -0.87
COL3A1-201ENST00000304636 TIRAPP58753 221 aa9.63□□□□□ -0.87
COL3A1-201ENST00000304636 C9orf66Q5T8R8 295 aa9.63□□□□□ -0.87
COL3A1-201ENST00000304636 TIMM17BO60830 172 aa9.63□□□□□ -0.87
COL3A1-201ENST00000304636 C22orf34Q6ZV56 151 aa9.63□□□□□ -0.87
COL3A1-201ENST00000304636 CNFNQ9BYD5 112 aa9.63□□□□□ -0.87
COL3A1-201ENST00000304636 ZMAT4Q9H898 229 aa9.63□□□□□ -0.87
COL3A1-201ENST00000304636 MUC22E2RYF6 1773 aaPredicted RBP9.62□□□□□ -0.87
COL3A1-201ENST00000304636 XGP55808 180 aa9.62□□□□□ -0.87
COL3A1-201ENST00000304636 PCDH15Q96QU1 1955 aa9.62□□□□□ -0.87
COL3A1-201ENST00000304636 H7C423 109 aa9.62□□□□□ -0.87
COL3A1-201ENST00000304636 LMO4P61968 165 aa9.62□□□□□ -0.87
COL3A1-201ENST00000304636 DEFB113Q30KQ7 82 aa9.62□□□□□ -0.87
COL3A1-201ENST00000304636 Q8NA96 180 aa9.62□□□□□ -0.87
COL3A1-201ENST00000304636 TNCP24821 2201 aa9.61□□□□□ -0.87
COL3A1-201ENST00000304636 TNFRSF13BO14836 293 aaPredicted RBP9.61□□□□□ -0.87
COL3A1-201ENST00000304636 COX7BP24311 80 aa9.6□□□□□ -0.87
COL3A1-201ENST00000304636 C20orf197Q8N268 126 aa9.6□□□□□ -0.87
COL3A1-201ENST00000304636 INSL3P51460 131 aa9.6□□□□□ -0.87
COL3A1-201ENST00000304636 C11orf21Q9P2W6 132 aa9.6□□□□□ -0.87
COL3A1-201ENST00000304636 PRO0255Q9UI72 69 aa9.6□□□□□ -0.87
COL3A1-201ENST00000304636 IBA57-AS1B1ANH7 110 aa9.6□□□□□ -0.87
COL3A1-201ENST00000304636 LST1O00453 97 aa9.6□□□□□ -0.87
COL3A1-201ENST00000304636 PLCE1Q9P212 2302 aa9.6□□□□□ -0.87
COL3A1-201ENST00000304636 FAM236DA0A1B0GTK5 79 aa9.59□□□□□ -0.87
COL3A1-201ENST00000304636 FAM236CP0DP71 79 aa9.59□□□□□ -0.87
COL3A1-201ENST00000304636 RNASE3P12724 160 aaKnown RBP9.59□□□□□ -0.87
COL3A1-201ENST00000304636 ATG2AQ2TAZ0 1938 aa9.59□□□□□ -0.87
COL3A1-201ENST00000304636 Q6ZTI0 123 aa9.59□□□□□ -0.87
COL3A1-201ENST00000304636 ESM1Q9NQ30 184 aa9.59□□□□□ -0.87
COL3A1-201ENST00000304636 NDUFB1O75438 58 aa9.59□□□□□ -0.87
COL3A1-201ENST00000304636 GAS8-AS1O95177 125 aa9.59□□□□□ -0.87
COL3A1-201ENST00000304636 NDUFA7O95182 113 aa9.59□□□□□ -0.87
COL3A1-201ENST00000304636 TSHBP01222 138 aa9.58□□□□□ -0.88
COL3A1-201ENST00000304636 POLR2KP53803 58 aaKnown RBP9.58□□□□□ -0.88
COL3A1-201ENST00000304636 KIAA1549Q9HCM3 1950 aa9.58□□□□□ -0.88
COL3A1-201ENST00000304636 PIK3CD-AS1Q5SR53 167 aa9.57□□□□□ -0.88
COL3A1-201ENST00000304636 FAM222AQ5U5X8 452 aa9.57□□□□□ -0.88
COL3A1-201ENST00000304636 SPTSSBQ8NFR3 76 aa9.57□□□□□ -0.88
COL3A1-201ENST00000304636 PKIGQ9Y2B9 76 aa9.57□□□□□ -0.88
COL3A1-201ENST00000304636 Q6ZS46 218 aa9.57□□□□□ -0.88
COL3A1-201ENST00000304636 Q6Q795 121 aa9.57□□□□□ -0.88
COL3A1-201ENST00000304636 KLK12Q9UKR0 248 aa9.57□□□□□ -0.88
COL3A1-201ENST00000304636 CCDC179H3BU77 68 aa9.57□□□□□ -0.88
COL3A1-201ENST00000304636 Q8N6K4 173 aa9.57□□□□□ -0.88
COL3A1-201ENST00000304636 PRR9Q5T870 116 aa9.56□□□□□ -0.88
COL3A1-201ENST00000304636 ENHOQ6UWT2 76 aa9.56□□□□□ -0.88
COL3A1-201ENST00000304636 DSCAML1Q8TD84 2053 aa9.55□□□□□ -0.88
COL3A1-201ENST00000304636 C10orf142B7Z368 130 aa9.55□□□□□ -0.88
COL3A1-201ENST00000304636 SERP2Q8N6R1 65 aa9.55□□□□□ -0.88
COL3A1-201ENST00000304636 BPY2O14599 106 aa9.55□□□□□ -0.88
COL3A1-201ENST00000304636 SLPIP03973 132 aa9.55□□□□□ -0.88
COL3A1-201ENST00000304636 KLLNB2CW77 178 aa9.54□□□□□ -0.88
COL3A1-201ENST00000304636 FAM110AQ9BQ89 295 aa9.54□□□□□ -0.88
COL3A1-201ENST00000304636 HCFC1P51610 2035 aa9.54□□□□□ -0.88
COL3A1-201ENST00000304636 A8MZ25 164 aa9.53□□□□□ -0.88
COL3A1-201ENST00000304636 COX7CP15954 63 aa9.53□□□□□ -0.88
COL3A1-201ENST00000304636 MPLKIPQ8TAP9 179 aa9.53□□□□□ -0.88
COL3A1-201ENST00000304636 PROK1P58294 105 aa9.53□□□□□ -0.88
COL3A1-201ENST00000304636 LINC00269Q8N2A0 174 aa9.53□□□□□ -0.88
COL3A1-201ENST00000304636 IGIPA6NJ69 53 aa9.53□□□□□ -0.88
COL3A1-201ENST00000304636 REG3AQ06141 175 aa9.53□□□□□ -0.88
COL3A1-201ENST00000304636 NRGNQ92686 78 aa9.53□□□□□ -0.88
COL3A1-201ENST00000304636 C9orf85Q96MD7 179 aa9.53□□□□□ -0.88
COL3A1-201ENST00000304636 FAM240AA0A1B0GVK7 77 aa9.52□□□□□ -0.88
COL3A1-201ENST00000304636 DEFB135Q30KP9 77 aa9.52□□□□□ -0.88
COL3A1-201ENST00000304636 DEFB114Q30KQ6 69 aa9.52□□□□□ -0.88
COL3A1-201ENST00000304636 UBE2D4Q9Y2X8 147 aa9.52□□□□□ -0.89
COL3A1-201ENST00000304636 CCL18P55774 89 aa9.52□□□□□ -0.89
COL3A1-201ENST00000304636 MRPS36P82909 103 aaKnown RBP9.52□□□□□ -0.89
COL3A1-201ENST00000304636 USP17L23D6RBM5 183 aa9.51□□□□□ -0.89
COL3A1-201ENST00000304636 UBE2D1P51668 147 aa9.51□□□□□ -0.89
COL3A1-201ENST00000304636 CRYGDP07320 174 aa9.51□□□□□ -0.89
COL3A1-201ENST00000304636 MRPL55Q7Z7F7 128 aaKnown RBP9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms