RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 GFRA4Q9GZZ7 299 aa9.3□□□□□ -0.92
CCDC88B-201ENST00000301897 NIT2Q9NQR4 276 aa9.3□□□□□ -0.92
CCDC88B-201ENST00000301897 LINC00474Q9P2X8 69 aa9.3□□□□□ -0.92
CCDC88B-201ENST00000301897 XKRY2A2RUG3 117 aa9.29□□□□□ -0.92
CCDC88B-201ENST00000301897 F2Z2F3 143 aa9.29□□□□□ -0.92
CCDC88B-201ENST00000301897 TRGC1P0CF51 173 aa9.29□□□□□ -0.92
CCDC88B-201ENST00000301897 AMTP48728 403 aa9.29□□□□□ -0.92
CCDC88B-201ENST00000301897 REG3GQ6UW15 175 aa9.29□□□□□ -0.92
CCDC88B-201ENST00000301897 Q6ZNX1 250 aa9.29□□□□□ -0.92
CCDC88B-201ENST00000301897 C15orf56Q8N910 161 aa9.29□□□□□ -0.92
CCDC88B-201ENST00000301897 FAM213BQ8TBF2 198 aa9.29□□□□□ -0.92
CCDC88B-201ENST00000301897 A0A0J9YXV3 536 aa9.28□□□□□ -0.92
CCDC88B-201ENST00000301897 A0A1B0GV50 99 aa9.28□□□□□ -0.92
CCDC88B-201ENST00000301897 GAGE12HA6NDE8 117 aa9.28□□□□□ -0.92
CCDC88B-201ENST00000301897 BCL2L11O43521 198 aa9.28□□□□□ -0.92
CCDC88B-201ENST00000301897 IGLC6P0CF74 106 aa9.28□□□□□ -0.92
CCDC88B-201ENST00000301897 RPL35P42766 123 aaKnown RBP9.28□□□□□ -0.92
CCDC88B-201ENST00000301897 STPG4Q8N801 248 aa9.28□□□□□ -0.92
CCDC88B-201ENST00000301897 IGKV2-24A0A0C4DH68 120 aa9.27□□□□□ -0.93
CCDC88B-201ENST00000301897 SPINK6Q6UWN8 80 aa9.27□□□□□ -0.93
CCDC88B-201ENST00000301897 OR2D3Q8NGH3 330 aa9.27□□□□□ -0.93
CCDC88B-201ENST00000301897 KANTRA0A1W2PQU2 76 aa9.26□□□□□ -0.93
CCDC88B-201ENST00000301897 H2AFB1P0C5Y9 115 aa9.26□□□□□ -0.93
CCDC88B-201ENST00000301897 TCTE3Q8IZS6 198 aa9.26□□□□□ -0.93
CCDC88B-201ENST00000301897 PRSS3P2Q8NHM4 247 aa9.26□□□□□ -0.93
CCDC88B-201ENST00000301897 C11orf52Q96A22 123 aa9.26□□□□□ -0.93
CCDC88B-201ENST00000301897 SMIM12Q96EX1 92 aa9.26□□□□□ -0.93
CCDC88B-201ENST00000301897 GVQW2A0A096LPI5 108 aaPredicted RBP9.25□□□□□ -0.93
CCDC88B-201ENST00000301897 HIGD2BQ4VC39 106 aa9.25□□□□□ -0.93
CCDC88B-201ENST00000301897 MANBALQ9NQG1 85 aa9.25□□□□□ -0.93
CCDC88B-201ENST00000301897 C19orf71A6NCJ1 209 aa9.24□□□□□ -0.93
CCDC88B-201ENST00000301897 H7C423 109 aa9.24□□□□□ -0.93
CCDC88B-201ENST00000301897 KRTAP10-8P60410 259 aa9.24□□□□□ -0.93
CCDC88B-201ENST00000301897 EIF5AP63241 154 aaKnown RBP9.24□□□□□ -0.93
CCDC88B-201ENST00000301897 AMMECR1LQ6DCA0 310 aa9.24□□□□□ -0.93
CCDC88B-201ENST00000301897 CHCHD10Q8WYQ3 142 aaPredicted RBP9.24□□□□□ -0.93
CCDC88B-201ENST00000301897 BIN3Q9NQY0 253 aa9.24□□□□□ -0.93
CCDC88B-201ENST00000301897 IGKV3OR2-268A0A0C4DH90 116 aa9.23□□□□□ -0.93
CCDC88B-201ENST00000301897 NCR2O95944 276 aa9.23□□□□□ -0.93
CCDC88B-201ENST00000301897 IFNA1P01562 189 aa9.23□□□□□ -0.93
CCDC88B-201ENST00000301897 CENPWQ5EE01 88 aa9.23□□□□□ -0.93
CCDC88B-201ENST00000301897 LYPD6BQ8NI32 183 aa9.23□□□□□ -0.93
CCDC88B-201ENST00000301897 GNG4P50150 75 aa9.22□□□□□ -0.93
CCDC88B-201ENST00000301897 LYZL1Q6UWQ5 148 aa9.22□□□□□ -0.93
CCDC88B-201ENST00000301897 Q6ZRP5 223 aa9.22□□□□□ -0.93
CCDC88B-201ENST00000301897 A0A096LNI7 61 aa9.21□□□□□ -0.94
CCDC88B-201ENST00000301897 NTF3P20783 257 aa9.21□□□□□ -0.94
CCDC88B-201ENST00000301897 CCL20P78556 96 aa9.21□□□□□ -0.94
CCDC88B-201ENST00000301897 C9orf62Q8N4C0 152 aa9.21□□□□□ -0.94
CCDC88B-201ENST00000301897 TRAV1-1A0A0B4J248 108 aa9.2□□□□□ -0.94
CCDC88B-201ENST00000301897 ZNF25P17030 456 aaPredicted RBP9.2□□□□□ -0.94
CCDC88B-201ENST00000301897 RNASEKQ6P5S7 137 aaKnown RBP9.2□□□□□ -0.94
CCDC88B-201ENST00000301897 GNG13Q9P2W3 67 aa9.2□□□□□ -0.94
CCDC88B-201ENST00000301897 IGHV1-58A0A0C4DH39 117 aa9.19□□□□□ -0.94
CCDC88B-201ENST00000301897 RAB19A4D1S5 217 aa9.19□□□□□ -0.94
CCDC88B-201ENST00000301897 TEX46H3BTG2 121 aa9.19□□□□□ -0.94
CCDC88B-201ENST00000301897 APCSP02743 223 aa9.19□□□□□ -0.94
CCDC88B-201ENST00000301897 CTRLP40313 264 aa9.19□□□□□ -0.94
CCDC88B-201ENST00000301897 FOXI1Q12951 378 aa9.19□□□□□ -0.94
CCDC88B-201ENST00000301897 TEX261Q6UWH6 196 aa9.19□□□□□ -0.94
CCDC88B-201ENST00000301897 CNFNQ9BYD5 112 aa9.19□□□□□ -0.94
CCDC88B-201ENST00000301897 PDE6DO43924 150 aa9.18□□□□□ -0.94
CCDC88B-201ENST00000301897 SRSF9Q13242 221 aaKnown RBP eCLIP9.18□□□□□ -0.94
CCDC88B-201ENST00000301897 TWIST1Q15672 202 aa9.18□□□□□ -0.94
CCDC88B-201ENST00000301897 SMIM15Q7Z3B0 74 aa9.18□□□□□ -0.94
CCDC88B-201ENST00000301897 GATD1Q8NB37 220 aa9.18□□□□□ -0.94
CCDC88B-201ENST00000301897 OR5A1Q8NGJ0 315 aa9.18□□□□□ -0.94
CCDC88B-201ENST00000301897 TMEM101Q96IK0 257 aa9.18□□□□□ -0.94
CCDC88B-201ENST00000301897 CARD19Q96LW7 228 aa9.18□□□□□ -0.94
CCDC88B-201ENST00000301897 FGF6P10767 208 aa9.17□□□□□ -0.94
CCDC88B-201ENST00000301897 ODF1Q14990 250 aa9.17□□□□□ -0.94
CCDC88B-201ENST00000301897 BTF3L4Q96K17 158 aa9.17□□□□□ -0.94
CCDC88B-201ENST00000301897 FAM210AQ96ND0 272 aa9.17□□□□□ -0.94
CCDC88B-201ENST00000301897 TRBV20OR9-2A0A075B6H5 130 aa9.16□□□□□ -0.94
CCDC88B-201ENST00000301897 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.16□□□□□ -0.94
CCDC88B-201ENST00000301897 IGKV2-29A2NJV5 120 aaPredicted RBP9.16□□□□□ -0.94
CCDC88B-201ENST00000301897 XCL1P47992 114 aa9.16□□□□□ -0.94
CCDC88B-201ENST00000301897 EIF5AL1Q6IS14 154 aaKnown RBP9.16□□□□□ -0.94
CCDC88B-201ENST00000301897 SLC51BQ86UW2 128 aa9.16□□□□□ -0.94
CCDC88B-201ENST00000301897 ZNF561-AS1K7EIQ3 104 aa9.15□□□□□ -0.94
CCDC88B-201ENST00000301897 MEF2BQ02080 365 aaPredicted RBP9.15□□□□□ -0.94
CCDC88B-201ENST00000301897 NUDT10Q8NFP7 164 aa9.15□□□□□ -0.94
CCDC88B-201ENST00000301897 ISOC2Q96AB3 205 aa9.15□□□□□ -0.94
CCDC88B-201ENST00000301897 NUDT11Q96G61 164 aa9.15□□□□□ -0.94
CCDC88B-201ENST00000301897 TRAV26-2A0A0B4J265 109 aa9.14□□□□□ -0.95
CCDC88B-201ENST00000301897 LINC00959A0A1B0GUT2 108 aa9.14□□□□□ -0.95
CCDC88B-201ENST00000301897 FAM231BA6NCW3 169 aa9.14□□□□□ -0.95
CCDC88B-201ENST00000301897 SDHAF1A6NFY7 115 aa9.14□□□□□ -0.95
CCDC88B-201ENST00000301897 CCL25O15444 150 aa9.14□□□□□ -0.95
CCDC88B-201ENST00000301897 GAS8-AS1O95177 125 aa9.14□□□□□ -0.95
CCDC88B-201ENST00000301897 SYCNQ0VAF6 134 aa9.14□□□□□ -0.95
CCDC88B-201ENST00000301897 SS18Q15532 418 aa9.14□□□□□ -0.95
CCDC88B-201ENST00000301897 AKAP14Q86UN6 197 aa9.14□□□□□ -0.95
CCDC88B-201ENST00000301897 MED9Q9NWA0 146 aa9.14□□□□□ -0.95
CCDC88B-201ENST00000301897 I3L3M4 83 aa9.13□□□□□ -0.95
CCDC88B-201ENST00000301897 PTTG1IPP53801 180 aa9.13□□□□□ -0.95
CCDC88B-201ENST00000301897 RPL39LQ96EH5 51 aaKnown RBP9.13□□□□□ -0.95
CCDC88B-201ENST00000301897 RPP21Q9H633 154 aaKnown RBP9.13□□□□□ -0.95
CCDC88B-201ENST00000301897 hCG_2014768A0A024R1R8 64 aa9.12□□□□□ -0.95
CCDC88B-201ENST00000301897 LOC107984640A0A0U1RRK4 108 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms