RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 Q6ZUT4 128 aa11.28□□□□□ -0.6
LSM6-201ENST00000296581 RASL10AQ92737 203 aa11.28□□□□□ -0.6
LSM6-201ENST00000296581 TM2D2Q9BX73 214 aa11.28□□□□□ -0.6
LSM6-201ENST00000296581 PRO0461Q9UI25 63 aa11.28□□□□□ -0.6
LSM6-201ENST00000296581 IGLV2-18A0A075B6J9 118 aa11.27□□□□□ -0.61
LSM6-201ENST00000296581 M0R2P5 195 aa11.27□□□□□ -0.61
LSM6-201ENST00000296581 CSNK1G2-AS1Q8NCQ2 148 aa11.27□□□□□ -0.61
LSM6-201ENST00000296581 SPXQ9BT56 116 aa11.27□□□□□ -0.61
LSM6-201ENST00000296581 NOTCH3Q9UM47 2321 aa11.27□□□□□ -0.61
LSM6-201ENST00000296581 A0A087WWL8 130 aa11.26□□□□□ -0.61
LSM6-201ENST00000296581 XGP55808 180 aa11.26□□□□□ -0.61
LSM6-201ENST00000296581 PCP2Q8IVA1 136 aa11.26□□□□□ -0.61
LSM6-201ENST00000296581 GAGE13Q4V321 117 aa11.26□□□□□ -0.61
LSM6-201ENST00000296581 C3orf56Q8N813 242 aa11.26□□□□□ -0.61
LSM6-201ENST00000296581 Q8N8P6 123 aa11.26□□□□□ -0.61
LSM6-201ENST00000296581 IL17DQ8TAD2 202 aa11.26□□□□□ -0.61
LSM6-201ENST00000296581 PPP1R17O96001 155 aa11.25□□□□□ -0.61
LSM6-201ENST00000296581 IGHV3OR16-12A0A075B7B8 117 aa11.25□□□□□ -0.61
LSM6-201ENST00000296581 A0A096LNJ9 63 aa11.25□□□□□ -0.61
LSM6-201ENST00000296581 APOMO95445 188 aa11.25□□□□□ -0.61
LSM6-201ENST00000296581 SUMO4Q6EEV6 95 aa11.25□□□□□ -0.61
LSM6-201ENST00000296581 TMEM158Q8WZ71 300 aa11.25□□□□□ -0.61
LSM6-201ENST00000296581 NMUP48645 174 aa11.24□□□□□ -0.61
LSM6-201ENST00000296581 FOXI1Q12951 378 aa11.24□□□□□ -0.61
LSM6-201ENST00000296581 RPL39LQ96EH5 51 aaKnown RBP11.24□□□□□ -0.61
LSM6-201ENST00000296581 IGLL5B9A064 214 aa11.24□□□□□ -0.61
LSM6-201ENST00000296581 LGALS9BQ3B8N2 356 aa11.24□□□□□ -0.61
LSM6-201ENST00000296581 LGALS9CQ6DKI2 356 aa11.24□□□□□ -0.61
LSM6-201ENST00000296581 TMEM263Q8WUH6 116 aaKnown RBP11.24□□□□□ -0.61
LSM6-201ENST00000296581 A8MWV9 139 aa11.23□□□□□ -0.61
LSM6-201ENST00000296581 SUMO2P61956 95 aaKnown RBP11.23□□□□□ -0.61
LSM6-201ENST00000296581 FAM74A4Q5TZK3 123 aa11.23□□□□□ -0.61
LSM6-201ENST00000296581 SMIM2Q9BVW6 85 aa11.23□□□□□ -0.61
LSM6-201ENST00000296581 A0A1B0GWB2 263 aa11.23□□□□□ -0.61
LSM6-201ENST00000296581 NHP2Q9NX24 153 aaKnown RBP11.23□□□□□ -0.61
LSM6-201ENST00000296581 F5H697 171 aa11.22□□□□□ -0.61
LSM6-201ENST00000296581 FBN1P35555 2871 aaKnown RBP11.22□□□□□ -0.61
LSM6-201ENST00000296581 HBDP02042 147 aa11.21□□□□□ -0.61
LSM6-201ENST00000296581 ZNF56Q15929 161 aa11.21□□□□□ -0.61
LSM6-201ENST00000296581 HIGD1BQ9P298 99 aa11.21□□□□□ -0.61
LSM6-201ENST00000296581 NACAE9PAV3 2078 aa11.21□□□□□ -0.61
LSM6-201ENST00000296581 M0QY20 66 aa11.21□□□□□ -0.62
LSM6-201ENST00000296581 ATP6V0E2Q8NHE4 81 aa11.21□□□□□ -0.62
LSM6-201ENST00000296581 EDA2RQ9HAV5 297 aa11.21□□□□□ -0.62
LSM6-201ENST00000296581 TRBV6-5A0A0K0K1A5 114 aa11.2□□□□□ -0.62
LSM6-201ENST00000296581 NHLRC4P0CG21 123 aaPredicted RBP11.2□□□□□ -0.62
LSM6-201ENST00000296581 CHAC1Q9BUX1 264 aa11.2□□□□□ -0.62
LSM6-201ENST00000296581 MAST4O15021 2626 aa11.2□□□□□ -0.62
LSM6-201ENST00000296581 FCER1GP30273 86 aa11.2□□□□□ -0.62
LSM6-201ENST00000296581 CFAP126Q5VTH2 177 aa11.2□□□□□ -0.62
LSM6-201ENST00000296581 C16orf74Q96GX8 76 aa11.2□□□□□ -0.62
LSM6-201ENST00000296581 RS1O15537 224 aa11.19□□□□□ -0.62
LSM6-201ENST00000296581 ZFAND6Q6FIF0 208 aa11.19□□□□□ -0.62
LSM6-201ENST00000296581 TRRAPQ9Y4A5 3859 aa11.19□□□□□ -0.62
LSM6-201ENST00000296581 PLAC8L1A1L4L8 177 aa11.19□□□□□ -0.62
LSM6-201ENST00000296581 PRSS29PA6NIE9 313 aa11.19□□□□□ -0.62
LSM6-201ENST00000296581 K7EMI3 77 aa11.19□□□□□ -0.62
LSM6-201ENST00000296581 DAZ2Q13117 558 aaKnown RBP11.19□□□□□ -0.62
LSM6-201ENST00000296581 LAGE3Q14657 143 aa11.19□□□□□ -0.62
LSM6-201ENST00000296581 RHODO00212 210 aa11.18□□□□□ -0.62
LSM6-201ENST00000296581 POLR2KP53803 58 aaKnown RBP11.18□□□□□ -0.62
LSM6-201ENST00000296581 RRN3P1Q2M238 152 aa11.18□□□□□ -0.62
LSM6-201ENST00000296581 NFE4Q86UQ8 179 aa11.18□□□□□ -0.62
LSM6-201ENST00000296581 CEND1Q8N111 149 aa11.18□□□□□ -0.62
LSM6-201ENST00000296581 KIR2DL5BQ8NHK3 375 aa11.18□□□□□ -0.62
LSM6-201ENST00000296581 TRGV1A0A0A0MS02 117 aa11.16□□□□□ -0.62
LSM6-201ENST00000296581 GAGE12JA6NER3 117 aa11.16□□□□□ -0.62
LSM6-201ENST00000296581 H7C1H1 209 aa11.16□□□□□ -0.62
LSM6-201ENST00000296581 GAGE7O76087 117 aa11.16□□□□□ -0.62
LSM6-201ENST00000296581 GAGE12FP0CL80 117 aa11.16□□□□□ -0.62
LSM6-201ENST00000296581 GAGE12GP0CL81 117 aa11.16□□□□□ -0.62
LSM6-201ENST00000296581 GAGE12IP0CL82 117 aa11.16□□□□□ -0.62
LSM6-201ENST00000296581 GAGE4Q13068 117 aa11.16□□□□□ -0.62
LSM6-201ENST00000296581 ORMDL2Q53FV1 153 aa11.16□□□□□ -0.62
LSM6-201ENST00000296581 ZFP2Q6ZN57 461 aa11.16□□□□□ -0.62
LSM6-201ENST00000296581 OVOL2Q9BRP0 275 aa11.16□□□□□ -0.62
LSM6-201ENST00000296581 A0A087WX48 190 aa11.15□□□□□ -0.62
LSM6-201ENST00000296581 IGHV3-73A0A0B4J1V6 119 aa11.15□□□□□ -0.62
LSM6-201ENST00000296581 STAB1Q9NY15 2570 aa11.15□□□□□ -0.62
LSM6-201ENST00000296581 TRBV27A0A0K0K1C4 114 aa11.15□□□□□ -0.62
LSM6-201ENST00000296581 SDHAF1A6NFY7 115 aa11.15□□□□□ -0.62
LSM6-201ENST00000296581 CCDC179H3BU77 68 aa11.15□□□□□ -0.62
LSM6-201ENST00000296581 VCYO14598 125 aa11.15□□□□□ -0.62
LSM6-201ENST00000296581 OXLD1Q5BKU9 147 aa11.15□□□□□ -0.62
LSM6-201ENST00000296581 Q6ZTI0 123 aa11.15□□□□□ -0.62
LSM6-201ENST00000296581 NOP10Q9NPE3 64 aaKnown RBP11.15□□□□□ -0.62
LSM6-201ENST00000296581 SMCPP49901 116 aaPredicted RBP11.14□□□□□ -0.63
LSM6-201ENST00000296581 APOC4P55056 127 aa11.14□□□□□ -0.63
LSM6-201ENST00000296581 C12orf74Q32Q52 190 aa11.14□□□□□ -0.63
LSM6-201ENST00000296581 IGKV2D-26A0A0A0MRZ7 120 aa11.14□□□□□ -0.63
LSM6-201ENST00000296581 IGHV3-53P01767 116 aa11.14□□□□□ -0.63
LSM6-201ENST00000296581 EGFEM1PQ0D2K5 195 aa11.14□□□□□ -0.63
LSM6-201ENST00000296581 Q6ZSN1 163 aa11.14□□□□□ -0.63
LSM6-201ENST00000296581 TTTY13Q9BZ97 58 aa11.14□□□□□ -0.63
LSM6-201ENST00000296581 IFI27L1Q96BM0 104 aa11.13□□□□□ -0.63
LSM6-201ENST00000296581 X6R8D5 127 aa11.13□□□□□ -0.63
LSM6-201ENST00000296581 TRBV25-1A0A075B6N4 114 aa11.12□□□□□ -0.63
LSM6-201ENST00000296581 TRAV4A0A0B4J268 109 aa11.12□□□□□ -0.63
LSM6-201ENST00000296581 SMIM9A6NGZ8 99 aa11.12□□□□□ -0.63
LSM6-201ENST00000296581 KRTAP10-11P60412 298 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 70.9 ms