RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 HIST1H4GQ99525 98 aa11.09□□□□□ -0.63
SF3B4-201ENST00000271628 WFDC10AQ9H1F0 79 aa11.09□□□□□ -0.63
SF3B4-201ENST00000271628 E9PLD3 99 aa11.08□□□□□ -0.63
SF3B4-201ENST00000271628 C21orf62-AS1Q17RA5 79 aa11.08□□□□□ -0.63
SF3B4-201ENST00000271628 CFAP126Q5VTH2 177 aa11.08□□□□□ -0.63
SF3B4-201ENST00000271628 ZFP2Q6ZN57 461 aa11.08□□□□□ -0.63
SF3B4-201ENST00000271628 CYSLTR1Q9Y271 337 aa11.08□□□□□ -0.63
SF3B4-201ENST00000271628 PRSS29PA6NIE9 313 aa11.08□□□□□ -0.64
SF3B4-201ENST00000271628 GIG44P09565 113 aaPredicted RBP11.08□□□□□ -0.64
SF3B4-201ENST00000271628 RPL35AP18077 110 aaKnown RBP11.08□□□□□ -0.64
SF3B4-201ENST00000271628 IL17DQ8TAD2 202 aa11.08□□□□□ -0.64
SF3B4-201ENST00000271628 PAPPA-AS1Q5QFB9 102 aa11.07□□□□□ -0.64
SF3B4-201ENST00000271628 TRBV7-3A0A075B6L6 115 aa11.07□□□□□ -0.64
SF3B4-201ENST00000271628 G3V4G9 280 aa11.07□□□□□ -0.64
SF3B4-201ENST00000271628 I3L3M4 83 aa11.07□□□□□ -0.64
SF3B4-201ENST00000271628 K7ERJ3 54 aa11.07□□□□□ -0.64
SF3B4-201ENST00000271628 RS1O15537 224 aa11.07□□□□□ -0.64
SF3B4-201ENST00000271628 C12orf74Q32Q52 190 aa11.07□□□□□ -0.64
SF3B4-201ENST00000271628 MRPL16Q9NX20 251 aaKnown RBP11.07□□□□□ -0.64
SF3B4-201ENST00000271628 C16orf74Q96GX8 76 aa11.06□□□□□ -0.64
SF3B4-201ENST00000271628 IGHV3-73A0A0B4J1V6 119 aa11.05□□□□□ -0.64
SF3B4-201ENST00000271628 IGLL5B9A064 214 aa11.05□□□□□ -0.64
SF3B4-201ENST00000271628 RIPPLY3P57055 190 aa11.05□□□□□ -0.64
SF3B4-201ENST00000271628 RHOHQ15669 191 aa11.05□□□□□ -0.64
SF3B4-201ENST00000271628 CSNK1G2-AS1Q8NCQ2 148 aa11.05□□□□□ -0.64
SF3B4-201ENST00000271628 A0A1B0GWB2 263 aa11.05□□□□□ -0.64
SF3B4-201ENST00000271628 TMEM141Q96I45 108 aa11.05□□□□□ -0.64
SF3B4-201ENST00000271628 TNFRSF18Q9Y5U5 241 aa11.05□□□□□ -0.64
SF3B4-201ENST00000271628 FLNBO75369 2602 aaKnown RBP11.05□□□□□ -0.64
SF3B4-201ENST00000271628 IGIPA6NJ69 53 aa11.04□□□□□ -0.64
SF3B4-201ENST00000271628 IGHV3-53P01767 116 aa11.04□□□□□ -0.64
SF3B4-201ENST00000271628 DAZ2Q13117 558 aaKnown RBP11.04□□□□□ -0.64
SF3B4-201ENST00000271628 ZNF479Q96JC4 524 aa11.04□□□□□ -0.64
SF3B4-201ENST00000271628 DNAJC30Q96LL9 226 aa11.04□□□□□ -0.64
SF3B4-201ENST00000271628 PRADC1Q9BSG0 188 aa11.04□□□□□ -0.64
SF3B4-201ENST00000271628 TP53TG1Q9Y2A0 90 aa11.04□□□□□ -0.64
SF3B4-201ENST00000271628 TRGV1A0A0A0MS02 117 aa11.04□□□□□ -0.64
SF3B4-201ENST00000271628 TIMM17AQ99595 171 aa11.04□□□□□ -0.64
SF3B4-201ENST00000271628 PMVKQ15126 192 aa11.03□□□□□ -0.64
SF3B4-201ENST00000271628 RRN3P1Q2M238 152 aa11.03□□□□□ -0.64
SF3B4-201ENST00000271628 COTL1Q14019 142 aa11.02□□□□□ -0.64
SF3B4-201ENST00000271628 TENM1Q9UKZ4 2725 aa11.02□□□□□ -0.64
SF3B4-201ENST00000271628 F8W1H4 67 aa11.02□□□□□ -0.65
SF3B4-201ENST00000271628 TSHBP01222 138 aa11.02□□□□□ -0.65
SF3B4-201ENST00000271628 HERVK_113P61574 105 aa11.02□□□□□ -0.65
SF3B4-201ENST00000271628 WFDC9Q8NEX5 89 aa11.02□□□□□ -0.65
SF3B4-201ENST00000271628 NACAE9PAV3 2078 aa11.02□□□□□ -0.65
SF3B4-201ENST00000271628 TEP1Q99973 2627 aaKnown RBP11.01□□□□□ -0.65
SF3B4-201ENST00000271628 JMJD1CQ15652 2540 aa11.01□□□□□ -0.65
SF3B4-201ENST00000271628 TMEM238LA0A1B0GVL6 79 aa11.01□□□□□ -0.65
SF3B4-201ENST00000271628 A6NJY4 79 aa11.01□□□□□ -0.65
SF3B4-201ENST00000271628 ZNF815PA8K554 130 aa11.01□□□□□ -0.65
SF3B4-201ENST00000271628 VWFP04275 2813 aa11.01□□□□□ -0.65
SF3B4-201ENST00000271628 F8P00451 2351 aa11□□□□□ -0.65
SF3B4-201ENST00000271628 IGLV4-69A0A075B6H9 119 aa11□□□□□ -0.65
SF3B4-201ENST00000271628 TRAV4A0A0B4J268 109 aa11□□□□□ -0.65
SF3B4-201ENST00000271628 CIDEAO60543 219 aa11□□□□□ -0.65
SF3B4-201ENST00000271628 P0DMU3 169 aa11□□□□□ -0.65
SF3B4-201ENST00000271628 FAM231AP0DMU4 169 aa11□□□□□ -0.65
SF3B4-201ENST00000271628 FAM231CP0DMU5 169 aa11□□□□□ -0.65
SF3B4-201ENST00000271628 SCGB1D4Q6XE38 83 aa11□□□□□ -0.65
SF3B4-201ENST00000271628 Q6ZSN1 163 aa11□□□□□ -0.65
SF3B4-201ENST00000271628 NOP10Q9NPE3 64 aaKnown RBP11□□□□□ -0.65
SF3B4-201ENST00000271628 RPL39P62891 51 aaKnown RBP10.99□□□□□ -0.65
SF3B4-201ENST00000271628 Q6ZTI0 123 aa10.99□□□□□ -0.65
SF3B4-201ENST00000271628 C20orf203Q8NBC4 194 aa10.99□□□□□ -0.65
SF3B4-201ENST00000271628 SPATA3Q8NHX4 192 aa10.99□□□□□ -0.65
SF3B4-201ENST00000271628 OVOL2Q9BRP0 275 aa10.99□□□□□ -0.65
SF3B4-201ENST00000271628 C11orf86A6NJI1 115 aa10.99□□□□□ -0.65
SF3B4-201ENST00000271628 DEFB104AQ8WTQ1 72 aa10.99□□□□□ -0.65
SF3B4-201ENST00000271628 PLAC8L1A1L4L8 177 aa10.98□□□□□ -0.65
SF3B4-201ENST00000271628 TRBV10-1A0A0K0K1A3 114 aa10.97□□□□□ -0.65
SF3B4-201ENST00000271628 WIPF1O43516 503 aa10.97□□□□□ -0.65
SF3B4-201ENST00000271628 ATRQ13535 2644 aa10.97□□□□□ -0.65
SF3B4-201ENST00000271628 RPL24P83731 157 aaKnown RBP10.97□□□□□ -0.65
SF3B4-201ENST00000271628 SRSF9Q13242 221 aaKnown RBP eCLIP10.97□□□□□ -0.65
SF3B4-201ENST00000271628 SMIM9A6NGZ8 99 aa10.96□□□□□ -0.66
SF3B4-201ENST00000271628 H3BMG7 143 aa10.96□□□□□ -0.66
SF3B4-201ENST00000271628 TRGV2A0A075B6R0 118 aa10.95□□□□□ -0.66
SF3B4-201ENST00000271628 TEX48A0A1B0GUV7 120 aa10.95□□□□□ -0.66
SF3B4-201ENST00000271628 UBE2D1P51668 147 aa10.95□□□□□ -0.66
SF3B4-201ENST00000271628 KIR2DL5BQ8NHK3 375 aa10.95□□□□□ -0.66
SF3B4-201ENST00000271628 PYGO1Q9Y3Y4 419 aa10.95□□□□□ -0.66
SF3B4-201ENST00000271628 K7EQD1 137 aa10.94□□□□□ -0.66
SF3B4-201ENST00000271628 RPL36AP83881 106 aaKnown RBP10.94□□□□□ -0.66
SF3B4-201ENST00000271628 NFE4Q86UQ8 179 aa10.94□□□□□ -0.66
SF3B4-201ENST00000271628 RPL36ALQ969Q0 106 aaKnown RBP10.94□□□□□ -0.66
SF3B4-201ENST00000271628 PLEKHB2Q96CS7 222 aa10.94□□□□□ -0.66
SF3B4-201ENST00000271628 SPANXB1Q9NS25 103 aaPredicted RBP10.94□□□□□ -0.66
SF3B4-201ENST00000271628 Q9UF83 564 aa10.94□□□□□ -0.66
SF3B4-201ENST00000271628 A0A0J9YY99 117 aa10.94□□□□□ -0.66
SF3B4-201ENST00000271628 J3QR89 54 aa10.94□□□□□ -0.66
SF3B4-201ENST00000271628 GAGE7O76087 117 aa10.94□□□□□ -0.66
SF3B4-201ENST00000271628 GAGE12FP0CL80 117 aa10.94□□□□□ -0.66
SF3B4-201ENST00000271628 GAGE12GP0CL81 117 aa10.94□□□□□ -0.66
SF3B4-201ENST00000271628 GAGE12IP0CL82 117 aa10.94□□□□□ -0.66
SF3B4-201ENST00000271628 GAGE13Q4V321 117 aa10.94□□□□□ -0.66
SF3B4-201ENST00000271628 TMEM170BQ5T4T1 132 aa10.94□□□□□ -0.66
SF3B4-201ENST00000271628 EMP1P54849 157 aa10.93□□□□□ -0.66
SF3B4-201ENST00000271628 APOC4P55056 127 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 56 ms