RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 A0A096LNJ9 63 aa12.21□□□□□ -0.45
CTCF-201ENST00000264010 SDHAF1A6NFY7 115 aa12.21□□□□□ -0.45
CTCF-201ENST00000264010 K7EQG2 157 aa12.21□□□□□ -0.45
CTCF-201ENST00000264010 A0A1B0GX51 115 aa12.21□□□□□ -0.45
CTCF-201ENST00000264010 LGALS9O00182 355 aa12.21□□□□□ -0.45
CTCF-201ENST00000264010 NRACQ8N912 160 aa12.21□□□□□ -0.45
CTCF-201ENST00000264010 BSNQ9UPA5 3926 aa12.21□□□□□ -0.46
CTCF-201ENST00000264010 ODF3Q96PU9 254 aa12.21□□□□□ -0.46
CTCF-201ENST00000264010 TINCRA0A1B0GVN0 87 aa12.2□□□□□ -0.46
CTCF-201ENST00000264010 IGHV3-73A0A0B4J1V6 119 aa12.2□□□□□ -0.46
CTCF-201ENST00000264010 HERVK_113P63121 156 aa12.2□□□□□ -0.46
CTCF-201ENST00000264010 ZNF415Q09FC8 603 aa12.2□□□□□ -0.46
CTCF-201ENST00000264010 LINC01620Q4KN68 170 aa12.2□□□□□ -0.46
CTCF-201ENST00000264010 KLK5Q9Y337 293 aaPredicted RBP12.2□□□□□ -0.46
CTCF-201ENST00000264010 CD28P10747 220 aa12.2□□□□□ -0.46
CTCF-201ENST00000264010 STHQ8IWL8 128 aa12.2□□□□□ -0.46
CTCF-201ENST00000264010 COL12A1Q99715 3063 aa12.19□□□□□ -0.46
CTCF-201ENST00000264010 RASL10AQ92737 203 aa12.19□□□□□ -0.46
CTCF-201ENST00000264010 DCANP1Q8TF63 244 aa12.19□□□□□ -0.46
CTCF-201ENST00000264010 F5H768 121 aa12.19□□□□□ -0.46
CTCF-201ENST00000264010 SUMO4Q6EEV6 95 aa12.19□□□□□ -0.46
CTCF-201ENST00000264010 ZNF702PQ9H963 129 aa12.19□□□□□ -0.46
CTCF-201ENST00000264010 hADV29S1A0JD25 119 aa12.18□□□□□ -0.46
CTCF-201ENST00000264010 CFHR3Q02985 330 aa12.18□□□□□ -0.46
CTCF-201ENST00000264010 RNASE13Q5GAN3 156 aaKnown RBP12.18□□□□□ -0.46
CTCF-201ENST00000264010 HIGD1BQ9P298 99 aa12.18□□□□□ -0.46
CTCF-201ENST00000264010 KLLNB2CW77 178 aa12.18□□□□□ -0.46
CTCF-201ENST00000264010 HRCT1Q6UXD1 115 aa12.18□□□□□ -0.46
CTCF-201ENST00000264010 TMEM141Q96I45 108 aa12.18□□□□□ -0.46
CTCF-201ENST00000264010 J3QQQ9 107 aa12.18□□□□□ -0.46
CTCF-201ENST00000264010 RBM3P98179 157 aaKnown RBP12.18□□□□□ -0.46
CTCF-201ENST00000264010 POLQO75417 2590 aa12.17□□□□□ -0.46
CTCF-201ENST00000264010 CLEC2BQ92478 149 aa12.17□□□□□ -0.46
CTCF-201ENST00000264010 TOMM6Q96B49 74 aa12.17□□□□□ -0.46
CTCF-201ENST00000264010 CCDC168Q8NDH2 2452 aa12.17□□□□□ -0.46
CTCF-201ENST00000264010 MAP1AP78559 2803 aaPredicted RBP12.17□□□□□ -0.46
CTCF-201ENST00000264010 RNASE3P12724 160 aaKnown RBP12.17□□□□□ -0.46
CTCF-201ENST00000264010 BRK1Q8WUW1 75 aa12.17□□□□□ -0.46
CTCF-201ENST00000264010 INSP01308 110 aa12.17□□□□□ -0.46
CTCF-201ENST00000264010 EDN2P20800 178 aa12.17□□□□□ -0.46
CTCF-201ENST00000264010 PRB2P02812 416 aaPredicted RBP12.16□□□□□ -0.46
CTCF-201ENST00000264010 JPT2Q9H910 190 aa12.16□□□□□ -0.46
CTCF-201ENST00000264010 KRTAP10-9P60411 292 aa12.16□□□□□ -0.46
CTCF-201ENST00000264010 BBC3Q96PG8 261 aaPredicted RBP12.15□□□□□ -0.46
CTCF-201ENST00000264010 FAM110AQ9BQ89 295 aa12.15□□□□□ -0.46
CTCF-201ENST00000264010 MDFICQ9P1T7 246 aa12.15□□□□□ -0.46
CTCF-201ENST00000264010 ANKRD17O75179 2603 aaKnown RBP12.14□□□□□ -0.47
CTCF-201ENST00000264010 IGHV3-16A0A0C4DH30 117 aa12.14□□□□□ -0.47
CTCF-201ENST00000264010 TMEM86BQ8N661 226 aa12.14□□□□□ -0.47
CTCF-201ENST00000264010 DAND5Q8N907 189 aa12.14□□□□□ -0.47
CTCF-201ENST00000264010 TM2D2Q9BX73 214 aa12.14□□□□□ -0.47
CTCF-201ENST00000264010 NFE4Q86UQ8 179 aa12.14□□□□□ -0.47
CTCF-201ENST00000264010 C4orf3Q8WVX3 66 aa12.14□□□□□ -0.47
CTCF-201ENST00000264010 PLEKHB2Q96CS7 222 aa12.14□□□□□ -0.47
CTCF-201ENST00000264010 I3L3M4 83 aa12.13□□□□□ -0.47
CTCF-201ENST00000264010 TIMM21Q9BVV7 248 aa12.13□□□□□ -0.47
CTCF-201ENST00000264010 TLN2Q9Y4G6 2542 aa12.13□□□□□ -0.47
CTCF-201ENST00000264010 MUSTN1Q8IVN3 82 aa12.13□□□□□ -0.47
CTCF-201ENST00000264010 VPS13CQ709C8 3753 aa12.12□□□□□ -0.47
CTCF-201ENST00000264010 SMIM9A6NGZ8 99 aa12.12□□□□□ -0.47
CTCF-201ENST00000264010 CMC4P56277 68 aaPredicted RBP12.12□□□□□ -0.47
CTCF-201ENST00000264010 CFAP126Q5VTH2 177 aa12.12□□□□□ -0.47
CTCF-201ENST00000264010 WFDC11Q8NEX6 87 aa12.12□□□□□ -0.47
CTCF-201ENST00000264010 TMEM61Q8N0U2 210 aa12.12□□□□□ -0.47
CTCF-201ENST00000264010 CRLF1O75462 422 aa12.12□□□□□ -0.47
CTCF-201ENST00000264010 RHOHQ15669 191 aa12.12□□□□□ -0.47
CTCF-201ENST00000264010 ATP6V0E2Q8NHE4 81 aa12.12□□□□□ -0.47
CTCF-201ENST00000264010 IGLV2-18A0A075B6J9 118 aa12.11□□□□□ -0.47
CTCF-201ENST00000264010 RHODO00212 210 aa12.11□□□□□ -0.47
CTCF-201ENST00000264010 RNF152Q8N8N0 203 aa12.11□□□□□ -0.47
CTCF-201ENST00000264010 BAALCQ8WXS3 180 aa12.11□□□□□ -0.47
CTCF-201ENST00000264010 NDUFA11Q86Y39 141 aa12.11□□□□□ -0.47
CTCF-201ENST00000264010 C11orf68Q9H3H3 251 aaKnown RBP12.11□□□□□ -0.47
CTCF-201ENST00000264010 NSUN5P1Q3KNT7 163 aa12.1□□□□□ -0.47
CTCF-201ENST00000264010 XCL2Q9UBD3 114 aa12.1□□□□□ -0.47
CTCF-201ENST00000264010 APRG1Q8IVJ8 170 aa12.1□□□□□ -0.47
CTCF-201ENST00000264010 J3QKU1 62 aa12.1□□□□□ -0.47
CTCF-201ENST00000264010 LINC01546A6NGU7 62 aa12.09□□□□□ -0.47
CTCF-201ENST00000264010 MORN3Q6PF18 240 aaPredicted RBP12.09□□□□□ -0.47
CTCF-201ENST00000264010 DSCR8Q96T75 97 aa12.09□□□□□ -0.47
CTCF-201ENST00000264010 PRRC2AP48634 2157 aaKnown RBP12.09□□□□□ -0.47
CTCF-201ENST00000264010 FAM19A5Q7Z5A7 132 aaPredicted RBP12.09□□□□□ -0.47
CTCF-201ENST00000264010 FAM19A4Q96LR4 140 aa12.09□□□□□ -0.47
CTCF-201ENST00000264010 ABCA2Q9BZC7 2435 aa12.08□□□□□ -0.48
CTCF-201ENST00000264010 ABCA12Q86UK0 2595 aa12.08□□□□□ -0.48
CTCF-201ENST00000264010 CCL24O00175 119 aa12.08□□□□□ -0.48
CTCF-201ENST00000264010 TMEM243Q9BU79 118 aa12.08□□□□□ -0.48
CTCF-201ENST00000264010 CDIP1Q9H305 208 aa12.08□□□□□ -0.48
CTCF-201ENST00000264010 HAMPP81172 84 aa12.08□□□□□ -0.48
CTCF-201ENST00000264010 NDUFA12Q9UI09 145 aa12.08□□□□□ -0.48
CTCF-201ENST00000264010 RPL39P62891 51 aaKnown RBP12.07□□□□□ -0.48
CTCF-201ENST00000264010 DNAJC9-AS1A6NH13 148 aa12.07□□□□□ -0.48
CTCF-201ENST00000264010 NEXN-AS1Q8NBZ9 246 aa12.07□□□□□ -0.48
CTCF-201ENST00000264010 TIMM17AQ99595 171 aa12.07□□□□□ -0.48
CTCF-201ENST00000264010 CSMD2Q7Z408 3487 aa12.07□□□□□ -0.48
CTCF-201ENST00000264010 TRGV1A0A0A0MS02 117 aa12.06□□□□□ -0.48
CTCF-201ENST00000264010 C18orf65Q6ZTR6 163 aa12.06□□□□□ -0.48
CTCF-201ENST00000264010 C9orf85Q96MD7 179 aa12.06□□□□□ -0.48
CTCF-201ENST00000264010 PF4P02776 101 aa12.06□□□□□ -0.48
CTCF-201ENST00000264010 NDUFA7O95182 113 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 99.6 ms