RNA–Protein interactions for RNA: ENST00000252816.10

LSM4-201, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2 BASIC

Gene LSM4, Length 986 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-201ENST00000252816 C1orf43Q9BWL3 253 aa15.11■□□□□ 0.01
LSM4-201ENST00000252816 SMDT1Q9H4I9 107 aa15.11■□□□□ 0.01
LSM4-201ENST00000252816 PRR34Q9NV39 138 aa15.11■□□□□ 0.01
LSM4-201ENST00000252816 NAT8Q9UHE5 227 aa15.11■□□□□ 0.01
LSM4-201ENST00000252816 CLPSL2Q6UWE3 100 aa15.1■□□□□ 0.01
LSM4-201ENST00000252816 LINC00269Q8N2A0 174 aa15.1■□□□□ 0.01
LSM4-201ENST00000252816 IGLV2-33A0A075B6J2 118 aaPredicted RBP15.09■□□□□ 0.01
LSM4-201ENST00000252816 COTL1Q14019 142 aa15.09■□□□□ 0.01
LSM4-201ENST00000252816 NUP35Q8NFH5 326 aa15.09■□□□□ 0.01
LSM4-201ENST00000252816 GAS8-AS1O95177 125 aa15.08■□□□□ 0
LSM4-201ENST00000252816 MIAQ16674 131 aa15.08■□□□□ 0
LSM4-201ENST00000252816 C20orf203Q8NBC4 194 aa15.08■□□□□ 0
LSM4-201ENST00000252816 TMEM191AQ9H0A3 160 aa15.08■□□□□ 0
LSM4-201ENST00000252816 DNAH8Q96JB1 4490 aa15.08■□□□□ 0
LSM4-201ENST00000252816 IGLV4-60A0A075B6I1 120 aa15.07■□□□□ 0
LSM4-201ENST00000252816 AMTP48728 403 aa15.07■□□□□ 0
LSM4-201ENST00000252816 RNF185Q96GF1 192 aa15.07■□□□□ 0
LSM4-201ENST00000252816 A0A1B0GUV1 79 aa15.06■□□□□ 0
LSM4-201ENST00000252816 FAT1Q14517 4588 aa15.06■□□□□ 0
LSM4-201ENST00000252816 SDHAF1A6NFY7 115 aa15.05■□□□□ -0
LSM4-201ENST00000252816 HAMPP81172 84 aa15.05■□□□□ -0
LSM4-201ENST00000252816 KRTAP26-1Q6PEX3 210 aa15.05■□□□□ -0
LSM4-201ENST00000252816 FAM30AQ9NZY2 134 aa15.05■□□□□ -0
LSM4-201ENST00000252816 RAB4AP20338 218 aa15.04■□□□□ -0
LSM4-201ENST00000252816 AMN1Q8IY45 258 aa15.04■□□□□ -0
LSM4-201ENST00000252816 TMEM70Q9BUB7 260 aa15.04■□□□□ -0
LSM4-201ENST00000252816 TRBV6-5A0A0K0K1A5 114 aa15.03■□□□□ -0
LSM4-201ENST00000252816 UBE2L6O14933 153 aa15.03■□□□□ -0
LSM4-201ENST00000252816 HLA-DQA1P01909 254 aa15.03■□□□□ -0
LSM4-201ENST00000252816 REG3AQ06141 175 aa15.03■□□□□ -0
LSM4-201ENST00000252816 RIGQ13278 110 aa15.03■□□□□ -0
LSM4-201ENST00000252816 NAT8BQ9UHF3 227 aa15.03■□□□□ -0
LSM4-201ENST00000252816 SMIM27A0A1W2PRY6 76 aa15.02■□□□□ -0
LSM4-201ENST00000252816 RPS10P46783 165 aaKnown RBP15.02■□□□□ -0
LSM4-201ENST00000252816 LINC01620Q4KN68 170 aa15.02■□□□□ -0
LSM4-201ENST00000252816 NCR2O95944 276 aa15.01□□□□□ -0.01
LSM4-201ENST00000252816 IGLV10-54A0A075B6I4 117 aa15□□□□□ -0.01
LSM4-201ENST00000252816 MRAP2Q96G30 205 aa15□□□□□ -0.01
LSM4-201ENST00000252816 USP17L23D6RBM5 183 aa14.99□□□□□ -0.01
LSM4-201ENST00000252816 I3L3M4 83 aa14.99□□□□□ -0.01
LSM4-201ENST00000252816 APCSP02743 223 aa14.99□□□□□ -0.01
LSM4-201ENST00000252816 ST20Q9HBF5 79 aa14.99□□□□□ -0.01
LSM4-201ENST00000252816 IGKV2D-29A0A075B6S2 120 aaPredicted RBP14.98□□□□□ -0.01
LSM4-201ENST00000252816 IGKV2-29A2NJV5 120 aaPredicted RBP14.98□□□□□ -0.01
LSM4-201ENST00000252816 SMKR1H3BMG3 65 aa14.98□□□□□ -0.01
LSM4-201ENST00000252816 PMCHP20382 165 aa14.98□□□□□ -0.01
LSM4-201ENST00000252816 C14orf177Q52M58 125 aa14.98□□□□□ -0.01
LSM4-201ENST00000252816 TSHBP01222 138 aa14.97□□□□□ -0.01
LSM4-201ENST00000252816 SMR3BP02814 79 aaPredicted RBP14.97□□□□□ -0.01
LSM4-201ENST00000252816 POLR2KP53803 58 aaKnown RBP14.97□□□□□ -0.01
LSM4-201ENST00000252816 Q6ZSA8 131 aa14.97□□□□□ -0.01
LSM4-201ENST00000252816 TRAV8-4A0A0B4J246 113 aa14.96□□□□□ -0.01
LSM4-201ENST00000252816 EPM2AB3EWF7 344 aa14.96□□□□□ -0.01
LSM4-201ENST00000252816 RAB14P61106 215 aa14.96□□□□□ -0.01
LSM4-201ENST00000252816 TMEM242Q9NWH2 141 aa14.96□□□□□ -0.01
LSM4-201ENST00000252816 PRSS1P07477 247 aa14.95□□□□□ -0.02
LSM4-201ENST00000252816 CAMPP49913 170 aa14.95□□□□□ -0.02
LSM4-201ENST00000252816 NRACQ8N912 160 aa14.95□□□□□ -0.02
LSM4-201ENST00000252816 H7C423 109 aa14.94□□□□□ -0.02
LSM4-201ENST00000252816 FGF6P10767 208 aa14.94□□□□□ -0.02
LSM4-201ENST00000252816 ESDP10768 282 aa14.94□□□□□ -0.02
LSM4-201ENST00000252816 FAM104BQ5XKR9 115 aa14.94□□□□□ -0.02
LSM4-201ENST00000252816 AMMECR1LQ6DCA0 310 aa14.94□□□□□ -0.02
LSM4-201ENST00000252816 TRBV27A0A0K0K1C4 114 aa14.93□□□□□ -0.02
LSM4-201ENST00000252816 MRPL51Q4U2R6 128 aaKnown RBP14.93□□□□□ -0.02
LSM4-201ENST00000252816 Q5VSD8 79 aa14.93□□□□□ -0.02
LSM4-201ENST00000252816 RNASEKQ6P5S7 137 aaKnown RBP14.93□□□□□ -0.02
LSM4-201ENST00000252816 VPS13BQ7Z7G8 4022 aa14.91□□□□□ -0.02
LSM4-201ENST00000252816 IGKV3OR2-268A0A0C4DH90 116 aa14.91□□□□□ -0.02
LSM4-201ENST00000252816 A0A1B0GW15 77 aa14.91□□□□□ -0.02
LSM4-201ENST00000252816 CLLU1Q5K131 121 aa14.91□□□□□ -0.02
LSM4-201ENST00000252816 MRPL54Q6P161 138 aaKnown RBP14.91□□□□□ -0.02
LSM4-201ENST00000252816 A0A1B0GXF2 115 aa14.9□□□□□ -0.02
LSM4-201ENST00000252816 SUMO2P61956 95 aaKnown RBP14.89□□□□□ -0.03
LSM4-201ENST00000252816 IFITM2Q01629 132 aa14.89□□□□□ -0.03
LSM4-201ENST00000252816 VCYO14598 125 aa14.88□□□□□ -0.03
LSM4-201ENST00000252816 PPP1R17O96001 155 aa14.88□□□□□ -0.03
LSM4-201ENST00000252816 ZNF25P17030 456 aaPredicted RBP14.88□□□□□ -0.03
LSM4-201ENST00000252816 HBBP68871 147 aa14.88□□□□□ -0.03
LSM4-201ENST00000252816 SRRM2Q9UQ35 2752 aaKnown RBP14.86□□□□□ -0.03
LSM4-201ENST00000252816 GAGE12HA6NDE8 117 aa14.86□□□□□ -0.03
LSM4-201ENST00000252816 PNRC1Q12796 327 aaPredicted RBP14.86□□□□□ -0.03
LSM4-201ENST00000252816 DGAT2L7PQ6IED9 249 aa14.86□□□□□ -0.03
LSM4-201ENST00000252816 CLRN3Q8NCR9 226 aa14.86□□□□□ -0.03
LSM4-201ENST00000252816 C7orf77A4D0Y5 90 aa14.85□□□□□ -0.03
LSM4-201ENST00000252816 LINC00862A6NCI5 91 aa14.85□□□□□ -0.03
LSM4-201ENST00000252816 PPP1R2P9O14990 202 aa14.85□□□□□ -0.03
LSM4-201ENST00000252816 S100A8P05109 93 aa14.85□□□□□ -0.03
LSM4-201ENST00000252816 CKS2P33552 79 aa14.85□□□□□ -0.03
LSM4-201ENST00000252816 SCXQ7RTU7 201 aa14.85□□□□□ -0.03
LSM4-201ENST00000252816 CHCHD10Q8WYQ3 142 aaPredicted RBP14.85□□□□□ -0.03
LSM4-201ENST00000252816 BTF3L4Q96K17 158 aa14.85□□□□□ -0.03
LSM4-201ENST00000252816 TRBV24-1A0A075B6N3 115 aa14.84□□□□□ -0.03
LSM4-201ENST00000252816 hDV102S1A0JD36 115 aa14.84□□□□□ -0.03
LSM4-201ENST00000252816 MRPL52Q86TS9 123 aaKnown RBP14.84□□□□□ -0.03
LSM4-201ENST00000252816 OR5A1Q8NGJ0 315 aa14.84□□□□□ -0.03
LSM4-201ENST00000252816 TMEM101Q96IK0 257 aa14.84□□□□□ -0.03
LSM4-201ENST00000252816 F8W036 122 aa14.83□□□□□ -0.04
LSM4-201ENST00000252816 FAM229AH3BQW9 127 aa14.83□□□□□ -0.04
LSM4-201ENST00000252816 FCER1GP30273 86 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 98.7 ms