RNA–Protein interactions for RNA: ENST00000238146.8

DDX55-201, Transcript of DEAD-box helicase 55, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DDX55, Length 2,654 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-201ENST00000238146 RBMY1CP0DJD4 496 aa11.35□□□□□ -0.59
DDX55-201ENST00000238146 RBMY1FQ15415 496 aaKnown RBP11.35□□□□□ -0.59
DDX55-201ENST00000238146 MIAQ16674 131 aa11.35□□□□□ -0.59
DDX55-201ENST00000238146 NPC2P61916 151 aa11.34□□□□□ -0.59
DDX55-201ENST00000238146 Q6Q795 121 aa11.34□□□□□ -0.59
DDX55-201ENST00000238146 C15orf53Q8NAA6 179 aa11.34□□□□□ -0.59
DDX55-201ENST00000238146 Q9UF83 564 aa11.34□□□□□ -0.59
DDX55-201ENST00000238146 HTN1P15515 57 aa11.33□□□□□ -0.59
DDX55-201ENST00000238146 C10orf105Q8TEF2 133 aa11.33□□□□□ -0.59
DDX55-201ENST00000238146 MAP1AP78559 2803 aaPredicted RBP11.33□□□□□ -0.6
DDX55-201ENST00000238146 TINCRA0A1B0GVN0 87 aa11.33□□□□□ -0.6
DDX55-201ENST00000238146 COX6CP09669 75 aa11.33□□□□□ -0.6
DDX55-201ENST00000238146 IFITM1P13164 125 aa11.33□□□□□ -0.6
DDX55-201ENST00000238146 TTC32Q5I0X7 151 aa11.33□□□□□ -0.6
DDX55-201ENST00000238146 RNF152Q8N8N0 203 aa11.33□□□□□ -0.6
DDX55-201ENST00000238146 CLEC2BQ92478 149 aa11.33□□□□□ -0.6
DDX55-201ENST00000238146 TNFRSF18Q9Y5U5 241 aa11.32□□□□□ -0.6
DDX55-201ENST00000238146 CSPG4Q6UVK1 2322 aa11.32□□□□□ -0.6
DDX55-201ENST00000238146 H3BT86 120 aa11.32□□□□□ -0.6
DDX55-201ENST00000238146 AVPP01185 164 aa11.32□□□□□ -0.6
DDX55-201ENST00000238146 SYNJ2BPP57105 145 aa11.32□□□□□ -0.6
DDX55-201ENST00000238146 TMEM61Q8N0U2 210 aa11.32□□□□□ -0.6
DDX55-201ENST00000238146 CHCHD7Q9BUK0 85 aa11.32□□□□□ -0.6
DDX55-201ENST00000238146 KNCNA6PVL3 124 aa11.31□□□□□ -0.6
DDX55-201ENST00000238146 UBE2D4Q9Y2X8 147 aa11.31□□□□□ -0.6
DDX55-201ENST00000238146 CREBBPQ92793 2442 aa11.31□□□□□ -0.6
DDX55-201ENST00000238146 LST1O00453 97 aa11.31□□□□□ -0.6
DDX55-201ENST00000238146 DUX5Q96PT3 197 aa11.31□□□□□ -0.6
DDX55-201ENST00000238146 CCDC179H3BU77 68 aa11.3□□□□□ -0.6
DDX55-201ENST00000238146 PRM2P04554 102 aa11.3□□□□□ -0.6
DDX55-201ENST00000238146 MSMBP08118 114 aa11.3□□□□□ -0.6
DDX55-201ENST00000238146 Q6ZSN1 163 aa11.3□□□□□ -0.6
DDX55-201ENST00000238146 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.3□□□□□ -0.6
DDX55-201ENST00000238146 IGHV4-30-2A0A087WSY4 118 aa11.3□□□□□ -0.6
DDX55-201ENST00000238146 IGKV2-29A2NJV5 120 aaPredicted RBP11.3□□□□□ -0.6
DDX55-201ENST00000238146 GAGE12JA6NER3 117 aa11.3□□□□□ -0.6
DDX55-201ENST00000238146 GAGE7O76087 117 aa11.3□□□□□ -0.6
DDX55-201ENST00000238146 GAGE12FP0CL80 117 aa11.3□□□□□ -0.6
DDX55-201ENST00000238146 GAGE12GP0CL81 117 aa11.3□□□□□ -0.6
DDX55-201ENST00000238146 GAGE12IP0CL82 117 aa11.3□□□□□ -0.6
DDX55-201ENST00000238146 GAGE4Q13068 117 aa11.3□□□□□ -0.6
DDX55-201ENST00000238146 SPANXA1Q9NS26 97 aa11.3□□□□□ -0.6
DDX55-201ENST00000238146 SPG11Q96JI7 2443 aa11.29□□□□□ -0.6
DDX55-201ENST00000238146 CRYBG3Q68DQ2 2970 aa11.29□□□□□ -0.6
DDX55-201ENST00000238146 DAND5Q8N907 189 aa11.29□□□□□ -0.6
DDX55-201ENST00000238146 YAE1D1Q9NRH1 226 aa11.29□□□□□ -0.6
DDX55-201ENST00000238146 IGHV4-59P01825 116 aa11.28□□□□□ -0.6
DDX55-201ENST00000238146 LY6DQ14210 128 aa11.28□□□□□ -0.6
DDX55-201ENST00000238146 DUX3Q96PT4 197 aa11.28□□□□□ -0.6
DDX55-201ENST00000238146 LINC00467Q9BRT7 94 aa11.28□□□□□ -0.6
DDX55-201ENST00000238146 NACAE9PAV3 2078 aa11.27□□□□□ -0.6
DDX55-201ENST00000238146 TIMM17BO60830 172 aa11.27□□□□□ -0.6
DDX55-201ENST00000238146 DEFB121Q5J5C9 76 aa11.27□□□□□ -0.6
DDX55-201ENST00000238146 CDKN2A-AS1Q9UH64 79 aa11.27□□□□□ -0.61
DDX55-201ENST00000238146 CCL19Q99731 98 aa11.26□□□□□ -0.61
DDX55-201ENST00000238146 TMEM89A2RUT3 159 aa11.26□□□□□ -0.61
DDX55-201ENST00000238146 MRPL23Q16540 153 aaKnown RBP11.26□□□□□ -0.61
DDX55-201ENST00000238146 IGHV3-38A0A0C4DH36 116 aa11.25□□□□□ -0.61
DDX55-201ENST00000238146 FAM240AA0A1B0GVK7 77 aa11.25□□□□□ -0.61
DDX55-201ENST00000238146 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.25□□□□□ -0.61
DDX55-201ENST00000238146 CITED2Q99967 270 aaPredicted RBP11.25□□□□□ -0.61
DDX55-201ENST00000238146 HOXD3P31249 432 aaPredicted RBP11.25□□□□□ -0.61
DDX55-201ENST00000238146 ATP5J2P56134 94 aa11.25□□□□□ -0.61
DDX55-201ENST00000238146 DEFB112Q30KQ8 113 aa11.24□□□□□ -0.61
DDX55-201ENST00000238146 TMEM101Q96IK0 257 aa11.24□□□□□ -0.61
DDX55-201ENST00000238146 CELSR2Q9HCU4 2923 aa11.24□□□□□ -0.61
DDX55-201ENST00000238146 RBMY1BA6NDE4 496 aaKnown RBP11.24□□□□□ -0.61
DDX55-201ENST00000238146 RBMY1EA6NEQ0 496 aaKnown RBP11.24□□□□□ -0.61
DDX55-201ENST00000238146 NDUFA1O15239 70 aa11.24□□□□□ -0.61
DDX55-201ENST00000238146 RBMY1DP0C7P1 496 aaKnown RBP11.24□□□□□ -0.61
DDX55-201ENST00000238146 DEFB131AP59861 70 aa11.24□□□□□ -0.61
DDX55-201ENST00000238146 IGLV5-45A0A087WSX0 123 aa11.23□□□□□ -0.61
DDX55-201ENST00000238146 TIRAPP58753 221 aa11.22□□□□□ -0.61
DDX55-201ENST00000238146 PIK3CD-AS1Q5SR53 167 aa11.22□□□□□ -0.61
DDX55-201ENST00000238146 NCOR2Q9Y618 2525 aa11.22□□□□□ -0.61
DDX55-201ENST00000238146 GNLYP22749 145 aa11.22□□□□□ -0.61
DDX55-201ENST00000238146 A8MTW9 85 aa11.22□□□□□ -0.61
DDX55-201ENST00000238146 B4DSR2 109 aa11.22□□□□□ -0.61
DDX55-201ENST00000238146 COX6A2Q02221 97 aa11.22□□□□□ -0.61
DDX55-201ENST00000238146 ZNF415Q09FC8 603 aa11.22□□□□□ -0.61
DDX55-201ENST00000238146 IGHV3-53P01767 116 aa11.21□□□□□ -0.61
DDX55-201ENST00000238146 LINC00308Q8TCZ7 52 aa11.21□□□□□ -0.61
DDX55-201ENST00000238146 CIRBPQ14011 172 aaKnown RBP11.2□□□□□ -0.62
DDX55-201ENST00000238146 DNAJC30Q96LL9 226 aa11.2□□□□□ -0.62
DDX55-201ENST00000238146 Q9H8V8 135 aa11.2□□□□□ -0.62
DDX55-201ENST00000238146 IGHV3OR16-12A0A075B7B8 117 aa11.2□□□□□ -0.62
DDX55-201ENST00000238146 CHD8Q9HCK8 2581 aa11.19□□□□□ -0.62
DDX55-201ENST00000238146 C11orf72Q8NBR9 251 aa11.19□□□□□ -0.62
DDX55-201ENST00000238146 ZNF625Q96I27 306 aaPredicted RBP11.19□□□□□ -0.62
DDX55-201ENST00000238146 IGLV5-39A0A0G2JS06 123 aa11.19□□□□□ -0.62
DDX55-201ENST00000238146 TRBV7-7A0A0K0K1E9 115 aa11.19□□□□□ -0.62
DDX55-201ENST00000238146 A0A0U1RRA0 63 aa11.19□□□□□ -0.62
DDX55-201ENST00000238146 DGAT2L7PQ6IED9 249 aa11.19□□□□□ -0.62
DDX55-201ENST00000238146 UBE2E2Q96LR5 201 aa11.19□□□□□ -0.62
DDX55-201ENST00000238146 COX7A2LO14548 114 aa11.17□□□□□ -0.62
DDX55-201ENST00000238146 LINC00242Q5T6M2 205 aa11.17□□□□□ -0.62
DDX55-201ENST00000238146 SOSTDC1Q6X4U4 206 aa11.17□□□□□ -0.62
DDX55-201ENST00000238146 SLURP1P55000 103 aa11.17□□□□□ -0.62
DDX55-201ENST00000238146 BEAN1Q3B7T3 259 aa11.17□□□□□ -0.62
DDX55-201ENST00000238146 Q8N2B8 174 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms