RNA–Protein interactions for RNA: ENST00000637285.1

SCN1A-215, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 100 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-215ENST00000637285 BASP1P80723 227 aaKnown RBP-2.65□□□□□ -2.83
SCN1A-215ENST00000637285 AKR1C8PQ5T2L2 129 aa-2.65□□□□□ -2.83
SCN1A-215ENST00000637285 DEFB123Q8N688 67 aa-2.65□□□□□ -2.83
SCN1A-215ENST00000637285 ATP6V1DQ9Y5K8 247 aa-2.65□□□□□ -2.83
SCN1A-215ENST00000637285 SMIM23A6NLE4 172 aa-2.66□□□□□ -2.84
SCN1A-215ENST00000637285 SRP9P49458 86 aaKnown RBP-2.66□□□□□ -2.84
SCN1A-215ENST00000637285 DEFA5Q01523 94 aa-2.66□□□□□ -2.84
SCN1A-215ENST00000637285 MAFIPQ8WZ33 124 aa-2.66□□□□□ -2.84
SCN1A-215ENST00000637285 ATP6V1G3Q96LB4 118 aa-2.66□□□□□ -2.84
SCN1A-215ENST00000637285 LYRM2Q9NU23 88 aaPredicted RBP-2.66□□□□□ -2.84
SCN1A-215ENST00000637285 ADGBQ8N7X0 1667 aa-2.66□□□□□ -2.84
SCN1A-215ENST00000637285 KNL1Q8NG31 2342 aa-2.67□□□□□ -2.84
SCN1A-215ENST00000637285 NSD3Q9BZ95 1437 aa-2.67□□□□□ -2.84
SCN1A-215ENST00000637285 XIRP1Q702N8 1843 aaKnown RBP-2.67□□□□□ -2.84
SCN1A-215ENST00000637285 TRDV1A0A1B0GX56 115 aa-2.67□□□□□ -2.84
SCN1A-215ENST00000637285 H3BMG7 143 aa-2.67□□□□□ -2.84
SCN1A-215ENST00000637285 MRPS15P82914 257 aaKnown RBP-2.67□□□□□ -2.84
SCN1A-215ENST00000637285 PLGLB1Q02325 96 aa-2.67□□□□□ -2.84
SCN1A-215ENST00000637285 TMED2Q15363 201 aa-2.67□□□□□ -2.84
SCN1A-215ENST00000637285 SPA17Q15506 151 aa-2.67□□□□□ -2.84
SCN1A-215ENST00000637285 LTC4SQ16873 150 aa-2.67□□□□□ -2.84
SCN1A-215ENST00000637285 TMEM91Q6ZNR0 172 aa-2.67□□□□□ -2.84
SCN1A-215ENST00000637285 CNPY4Q8N129 248 aa-2.67□□□□□ -2.84
SCN1A-215ENST00000637285 DYNLRB2Q8TF09 96 aa-2.67□□□□□ -2.84
SCN1A-215ENST00000637285 SH3BGRL3Q9H299 93 aa-2.67□□□□□ -2.84
SCN1A-215ENST00000637285 MGAM2Q2M2H8 2515 aa-2.67□□□□□ -2.84
SCN1A-215ENST00000637285 KDM5AP29375 1690 aaKnown RBP-2.67□□□□□ -2.84
SCN1A-215ENST00000637285 DOCK1Q14185 1865 aa-2.67□□□□□ -2.84
SCN1A-215ENST00000637285 PARP14Q460N5 1801 aa-2.68□□□□□ -2.84
SCN1A-215ENST00000637285 TECPR2O15040 1411 aa-2.68□□□□□ -2.84
SCN1A-215ENST00000637285 DNHD1Q96M86 4753 aa-2.69□□□□□ -2.84
SCN1A-215ENST00000637285 GAPVD1Q14C86 1478 aa-2.69□□□□□ -2.84
SCN1A-215ENST00000637285 STX19Q8N4C7 294 aa-2.69□□□□□ -2.84
SCN1A-215ENST00000637285 APLNQ9ULZ1 77 aa-2.69□□□□□ -2.84
SCN1A-215ENST00000637285 ABCA13Q86UQ4 5058 aa-2.7□□□□□ -2.84
SCN1A-215ENST00000637285 TPM3P06753 285 aa-2.7□□□□□ -2.84
SCN1A-215ENST00000637285 CST2P09228 141 aa-2.7□□□□□ -2.84
SCN1A-215ENST00000637285 C9orf62Q8N4C0 152 aa-2.7□□□□□ -2.84
SCN1A-215ENST00000637285 ARMC1Q9NVT9 282 aa-2.7□□□□□ -2.84
SCN1A-215ENST00000637285 SS18L2Q9UHA2 77 aa-2.7□□□□□ -2.84
SCN1A-215ENST00000637285 UFC1Q9Y3C8 167 aa-2.7□□□□□ -2.84
SCN1A-215ENST00000637285 ANK3Q12955 4377 aaKnown RBP-2.7□□□□□ -2.84
SCN1A-215ENST00000637285 DMXL1Q9Y485 3027 aa-2.7□□□□□ -2.84
SCN1A-215ENST00000637285 ADGRB1O14514 1584 aa-2.7□□□□□ -2.84
SCN1A-215ENST00000637285 WDR87Q6ZQQ6 2873 aa-2.71□□□□□ -2.84
SCN1A-215ENST00000637285 CLPSL1A2RUU4 121 aa-2.71□□□□□ -2.84
SCN1A-215ENST00000637285 SYS1-DBNDD2H3BUS1 97 aa-2.71□□□□□ -2.84
SCN1A-215ENST00000637285 M0QZK8 103 aa-2.71□□□□□ -2.84
SCN1A-215ENST00000637285 HSD17B12Q53GQ0 312 aa-2.71□□□□□ -2.84
SCN1A-215ENST00000637285 SNX29P2Q8IUI4 249 aa-2.71□□□□□ -2.84
SCN1A-215ENST00000637285 H0YGG7 62 aa-2.72□□□□□ -2.84
SCN1A-215ENST00000637285 CCDC179H3BU77 68 aa-2.72□□□□□ -2.84
SCN1A-215ENST00000637285 ATG12O94817 140 aa-2.72□□□□□ -2.84
SCN1A-215ENST00000637285 S100A11P31949 105 aa-2.72□□□□□ -2.84
SCN1A-215ENST00000637285 CEBPGP53567 150 aa-2.72□□□□□ -2.84
SCN1A-215ENST00000637285 Q6JHZ5 121 aa-2.72□□□□□ -2.84
SCN1A-215ENST00000637285 METTL1Q9UBP6 276 aaKnown RBP-2.72□□□□□ -2.84
SCN1A-215ENST00000637285 RIF1Q5UIP0 2472 aaKnown RBP-2.73□□□□□ -2.85
SCN1A-215ENST00000637285 H3BNG1 76 aa-2.73□□□□□ -2.85
SCN1A-215ENST00000637285 SMIM4Q8WVI0 70 aa-2.73□□□□□ -2.85
SCN1A-215ENST00000637285 SLC35B3Q9H1N7 401 aa-2.73□□□□□ -2.85
SCN1A-215ENST00000637285 NUP210Q8TEM1 1887 aaPredicted RBP-2.73□□□□□ -2.85
SCN1A-215ENST00000637285 UQCRQO14949 82 aa-2.74□□□□□ -2.85
SCN1A-215ENST00000637285 IFNGP01579 166 aa-2.74□□□□□ -2.85
SCN1A-215ENST00000637285 SLC25A5P05141 298 aaKnown RBP-2.74□□□□□ -2.85
SCN1A-215ENST00000637285 TPM4P67936 248 aa-2.74□□□□□ -2.85
SCN1A-215ENST00000637285 C9orf116Q5BN46 136 aaPredicted RBP-2.74□□□□□ -2.85
SCN1A-215ENST00000637285 PHB2Q99623 299 aa-2.74□□□□□ -2.85
SCN1A-215ENST00000637285 LYSTQ99698 3801 aa-2.74□□□□□ -2.85
SCN1A-215ENST00000637285 LLPHQ9BRT6 129 aaKnown RBP-2.74□□□□□ -2.85
SCN1A-215ENST00000637285 CBLN4Q9NTU7 201 aa-2.74□□□□□ -2.85
SCN1A-215ENST00000637285 NOP16Q9Y3C1 178 aaKnown RBP-2.74□□□□□ -2.85
SCN1A-215ENST00000637285 LRRC37A2A6NM11 1700 aa-2.74□□□□□ -2.85
SCN1A-215ENST00000637285 PCF11O94913 1555 aaKnown RBP-2.74□□□□□ -2.85
SCN1A-215ENST00000637285 TRBV7-6A0A0J9YX20 115 aa-2.75□□□□□ -2.85
SCN1A-215ENST00000637285 PITX3O75364 302 aa-2.75□□□□□ -2.85
SCN1A-215ENST00000637285 HIST1H1BP16401 226 aaKnown RBP-2.75□□□□□ -2.85
SCN1A-215ENST00000637285 UBE2D1P51668 147 aa-2.75□□□□□ -2.85
SCN1A-215ENST00000637285 ZZEF1O43149 2961 aa-2.76□□□□□ -2.85
SCN1A-215ENST00000637285 TROQ12816 1431 aaPredicted RBP-2.76□□□□□ -2.85
SCN1A-215ENST00000637285 PKD1L2Q7Z442 2459 aa-2.76□□□□□ -2.85
SCN1A-215ENST00000637285 COX8AP10176 69 aa-2.76□□□□□ -2.85
SCN1A-215ENST00000637285 CTXND1A0A1B0GTU2 59 aa-2.77□□□□□ -2.85
SCN1A-215ENST00000637285 FAM25EA8MYX2 175 aa-2.77□□□□□ -2.85
SCN1A-215ENST00000637285 CCL18P55774 89 aa-2.77□□□□□ -2.85
SCN1A-215ENST00000637285 CCL7P80098 99 aa-2.77□□□□□ -2.85
SCN1A-215ENST00000637285 H1FX-AS1Q4G0G2 97 aa-2.77□□□□□ -2.85
SCN1A-215ENST00000637285 ATP6V0E2Q8NHE4 81 aa-2.77□□□□□ -2.85
SCN1A-215ENST00000637285 C10orf82Q8WW14 230 aa-2.77□□□□□ -2.85
SCN1A-215ENST00000637285 PRAP1Q96NZ9 151 aa-2.77□□□□□ -2.85
SCN1A-215ENST00000637285 ARL2BPQ9Y2Y0 163 aa-2.77□□□□□ -2.85
SCN1A-215ENST00000637285 KALRNO60229 2985 aa-2.77□□□□□ -2.85
SCN1A-215ENST00000637285 DYDC1Q8WWB3 177 aa-2.78□□□□□ -2.85
SCN1A-215ENST00000637285 GINS3Q9BRX5 216 aa-2.78□□□□□ -2.85
SCN1A-215ENST00000637285 LAMTOR2Q9Y2Q5 125 aa-2.78□□□□□ -2.85
SCN1A-215ENST00000637285 DNAH11Q96DT5 4516 aa-2.78□□□□□ -2.85
SCN1A-215ENST00000637285 MED23Q9ULK4 1368 aa-2.78□□□□□ -2.85
SCN1A-215ENST00000637285 BORCS7-ASMTA0A0B4J1R7 106 aa-2.79□□□□□ -2.86
SCN1A-215ENST00000637285 CPSF4LA6NMK7 179 aaKnown RBP-2.79□□□□□ -2.86
SCN1A-215ENST00000637285 M0R135 149 aa-2.79□□□□□ -2.86
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms