RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 PTH2Q96A98 100 aa9.08□□□□□ -0.96
CLN3-249ENST00000636685 IGHV3-64A0A075B6Q5 118 aa9.07□□□□□ -0.96
CLN3-249ENST00000636685 SRP19P09132 144 aaKnown RBP9.07□□□□□ -0.96
CLN3-249ENST00000636685 CNBPP62633 177 aaKnown RBP9.07□□□□□ -0.96
CLN3-249ENST00000636685 ACTR3CQ9C0K3 210 aaPredicted RBP9.07□□□□□ -0.96
CLN3-249ENST00000636685 JPT2Q9H910 190 aa9.07□□□□□ -0.96
CLN3-249ENST00000636685 RHEBQ15382 184 aa9.06□□□□□ -0.96
CLN3-249ENST00000636685 KRTAP26-1Q6PEX3 210 aa9.06□□□□□ -0.96
CLN3-249ENST00000636685 TMEM75Q8N9X5 138 aa9.06□□□□□ -0.96
CLN3-249ENST00000636685 CTXND1A0A1B0GTU2 59 aa9.05□□□□□ -0.96
CLN3-249ENST00000636685 M0R036 132 aa9.05□□□□□ -0.96
CLN3-249ENST00000636685 ANGP03950 147 aaKnown RBP9.05□□□□□ -0.96
CLN3-249ENST00000636685 RNASE3P12724 160 aaKnown RBP9.05□□□□□ -0.96
CLN3-249ENST00000636685 MPV17L2Q567V2 206 aa9.05□□□□□ -0.96
CLN3-249ENST00000636685 UFSP1Q6NVU6 142 aa9.05□□□□□ -0.96
CLN3-249ENST00000636685 OR10G7Q8NGN6 311 aa9.05□□□□□ -0.96
CLN3-249ENST00000636685 RPS10P5Q9NQ39 176 aa9.05□□□□□ -0.96
CLN3-249ENST00000636685 KCNIP2Q9NS61 270 aa9.05□□□□□ -0.96
CLN3-249ENST00000636685 VAX2Q9UIW0 290 aa9.05□□□□□ -0.96
CLN3-249ENST00000636685 A0A1B0GV50 99 aa9.04□□□□□ -0.96
CLN3-249ENST00000636685 hDV102S1A0JD36 115 aa9.04□□□□□ -0.96
CLN3-249ENST00000636685 C7orf77A4D0Y5 90 aa9.04□□□□□ -0.96
CLN3-249ENST00000636685 A8MWV9 139 aa9.04□□□□□ -0.96
CLN3-249ENST00000636685 B4DEV8 164 aa9.04□□□□□ -0.96
CLN3-249ENST00000636685 OR7C2O60412 319 aa9.04□□□□□ -0.96
CLN3-249ENST00000636685 SLPIP03973 132 aa9.04□□□□□ -0.96
CLN3-249ENST00000636685 ZNF80P51504 273 aaPredicted RBP9.04□□□□□ -0.96
CLN3-249ENST00000636685 MIAQ16674 131 aa9.04□□□□□ -0.96
CLN3-249ENST00000636685 GOLT1AQ6ZVE7 132 aa9.04□□□□□ -0.96
CLN3-249ENST00000636685 MUC21A0A0G2JKD1 596 aa9.03□□□□□ -0.96
CLN3-249ENST00000636685 MAP1LC3B2A6NCE7 125 aa9.03□□□□□ -0.96
CLN3-249ENST00000636685 BCL2P10415 239 aa9.03□□□□□ -0.96
CLN3-249ENST00000636685 FLI1Q01543 452 aaPredicted RBP9.03□□□□□ -0.96
CLN3-249ENST00000636685 SRSF9Q13242 221 aaKnown RBP eCLIP9.03□□□□□ -0.96
CLN3-249ENST00000636685 CLPSL2Q6UWE3 100 aa9.03□□□□□ -0.96
CLN3-249ENST00000636685 NPCDR1Q9BY65 106 aa9.03□□□□□ -0.96
CLN3-249ENST00000636685 MAP1LC3BQ9GZQ8 125 aa9.03□□□□□ -0.96
CLN3-249ENST00000636685 GNG13Q9P2W3 67 aa9.03□□□□□ -0.96
CLN3-249ENST00000636685 A0A087WWL8 130 aa9.02□□□□□ -0.97
CLN3-249ENST00000636685 UBE2L3P68036 154 aaKnown RBP9.02□□□□□ -0.97
CLN3-249ENST00000636685 ZNF726P1Q15940 193 aa9.02□□□□□ -0.97
CLN3-249ENST00000636685 CBLN2Q8IUK8 224 aa9.02□□□□□ -0.97
CLN3-249ENST00000636685 MANBALQ9NQG1 85 aa9.02□□□□□ -0.97
CLN3-249ENST00000636685 COLCA2A8K830 154 aa9.01□□□□□ -0.97
CLN3-249ENST00000636685 MT-ND4LP03901 98 aa9.01□□□□□ -0.97
CLN3-249ENST00000636685 PNRC1Q12796 327 aaPredicted RBP9.01□□□□□ -0.97
CLN3-249ENST00000636685 MAJINQ3KP22 176 aa9.01□□□□□ -0.97
CLN3-249ENST00000636685 SGK494Q96LW2 274 aa9.01□□□□□ -0.97
CLN3-249ENST00000636685 TRAV16A0A0A6YYK6 109 aaPredicted RBP9□□□□□ -0.97
CLN3-249ENST00000636685 A0A1W2PPV4 95 aa9□□□□□ -0.97
CLN3-249ENST00000636685 H7C1H1 209 aa9□□□□□ -0.97
CLN3-249ENST00000636685 CMTM2Q8TAZ6 248 aa9□□□□□ -0.97
CLN3-249ENST00000636685 RAB24Q969Q5 203 aa9□□□□□ -0.97
CLN3-249ENST00000636685 OTORQ9NRC9 128 aa9□□□□□ -0.97
CLN3-249ENST00000636685 TRBV6-8A0A0A6YYG3 113 aa8.99□□□□□ -0.97
CLN3-249ENST00000636685 TMEM250H0YL14 139 aa8.99□□□□□ -0.97
CLN3-249ENST00000636685 CDC34P49427 236 aaPredicted RBP8.99□□□□□ -0.97
CLN3-249ENST00000636685 COX6A2Q02221 97 aa8.99□□□□□ -0.97
CLN3-249ENST00000636685 AP5S1Q9NUS5 200 aa8.99□□□□□ -0.97
CLN3-249ENST00000636685 IGKV2-24A0A0C4DH68 120 aa8.98□□□□□ -0.97
CLN3-249ENST00000636685 GCGP01275 180 aa8.98□□□□□ -0.97
CLN3-249ENST00000636685 CEBPGP53567 150 aa8.98□□□□□ -0.97
CLN3-249ENST00000636685 UBE2D3P61077 147 aa8.98□□□□□ -0.97
CLN3-249ENST00000636685 UBE2D2P62837 147 aa8.98□□□□□ -0.97
CLN3-249ENST00000636685 GNG5P63218 68 aa8.98□□□□□ -0.97
CLN3-249ENST00000636685 FAM74A4Q5TZK3 123 aa8.98□□□□□ -0.97
CLN3-249ENST00000636685 STPG4Q8N801 248 aa8.98□□□□□ -0.97
CLN3-249ENST00000636685 PRR34Q9NV39 138 aa8.98□□□□□ -0.97
CLN3-249ENST00000636685 TMEM242Q9NWH2 141 aa8.98□□□□□ -0.97
CLN3-249ENST00000636685 IGLV10-54A0A075B6I4 117 aa8.97□□□□□ -0.97
CLN3-249ENST00000636685 C1orf196B1AJZ1 125 aa8.97□□□□□ -0.97
CLN3-249ENST00000636685 EIF3GO75821 320 aaKnown RBP eCLIP8.97□□□□□ -0.97
CLN3-249ENST00000636685 RAB5BP61020 215 aa8.97□□□□□ -0.97
CLN3-249ENST00000636685 MEF2BQ02080 365 aaPredicted RBP8.97□□□□□ -0.97
CLN3-249ENST00000636685 TMEM241Q24JQ0 296 aa8.97□□□□□ -0.97
CLN3-249ENST00000636685 PIK3CD-AS1Q5SR53 167 aa8.97□□□□□ -0.97
CLN3-249ENST00000636685 LINC00269Q8N2A0 174 aa8.97□□□□□ -0.97
CLN3-249ENST00000636685 HIST1H2BAQ96A08 127 aa8.97□□□□□ -0.97
CLN3-249ENST00000636685 CHCHD5Q9BSY4 110 aa8.97□□□□□ -0.97
CLN3-249ENST00000636685 CTDSP1Q9GZU7 261 aa8.97□□□□□ -0.97
CLN3-249ENST00000636685 BIN3Q9NQY0 253 aa8.97□□□□□ -0.97
CLN3-249ENST00000636685 FAM231BA6NCW3 169 aa8.96□□□□□ -0.98
CLN3-249ENST00000636685 ZNF727A8MUV8 499 aa8.96□□□□□ -0.98
CLN3-249ENST00000636685 RHODO00212 210 aa8.96□□□□□ -0.98
CLN3-249ENST00000636685 CXorf1O96002 111 aa8.96□□□□□ -0.98
CLN3-249ENST00000636685 S100A4P26447 101 aaKnown RBP8.96□□□□□ -0.98
CLN3-249ENST00000636685 RPL36AP83881 106 aaKnown RBP8.96□□□□□ -0.98
CLN3-249ENST00000636685 PRSS3P2Q8NHM4 247 aa8.96□□□□□ -0.98
CLN3-249ENST00000636685 RPL36ALQ969Q0 106 aaKnown RBP8.96□□□□□ -0.98
CLN3-249ENST00000636685 NDFIP1Q9BT67 221 aa8.96□□□□□ -0.98
CLN3-249ENST00000636685 NAT8Q9UHE5 227 aa8.96□□□□□ -0.98
CLN3-249ENST00000636685 PDE6DO43924 150 aa8.95□□□□□ -0.98
CLN3-249ENST00000636685 STAG3L2P0CL84 134 aa8.95□□□□□ -0.98
CLN3-249ENST00000636685 STAG3L3P0CL85 134 aa8.95□□□□□ -0.98
CLN3-249ENST00000636685 AKR1C3P42330 323 aa8.95□□□□□ -0.98
CLN3-249ENST00000636685 CRCT1Q9UGL9 99 aa8.95□□□□□ -0.98
CLN3-249ENST00000636685 TRBV7-3A0A075B6L6 115 aa8.94□□□□□ -0.98
CLN3-249ENST00000636685 IGKV3D-20A0A0C4DH25 116 aa8.94□□□□□ -0.98
CLN3-249ENST00000636685 PAGE4O60829 102 aa8.94□□□□□ -0.98
CLN3-249ENST00000636685 RAB5AP20339 215 aa8.94□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms