RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 IGHV4-31P0DP07 118 aa9.37□□□□□ -0.91
LINC00540-203ENST00000631321 Q8N2B8 174 aa9.37□□□□□ -0.91
LINC00540-203ENST00000631321 MAPK1IP1LQ8NDC0 245 aa9.37□□□□□ -0.91
LINC00540-203ENST00000631321 LEPROTO15243 131 aa9.37□□□□□ -0.91
LINC00540-203ENST00000631321 TSPAN13O95857 204 aa9.37□□□□□ -0.91
LINC00540-203ENST00000631321 Q5PR19 223 aa9.37□□□□□ -0.91
LINC00540-203ENST00000631321 PIK3CD-AS1Q5SR53 167 aa9.37□□□□□ -0.91
LINC00540-203ENST00000631321 SPAG8Q99932 426 aaPredicted RBP9.37□□□□□ -0.91
LINC00540-203ENST00000631321 OPRPNQ99935 248 aaPredicted RBP9.37□□□□□ -0.91
LINC00540-203ENST00000631321 IGLV4-3A0A075B6K6 122 aa9.36□□□□□ -0.91
LINC00540-203ENST00000631321 KNCNA6PVL3 124 aa9.36□□□□□ -0.91
LINC00540-203ENST00000631321 UBE2D3P61077 147 aa9.36□□□□□ -0.91
LINC00540-203ENST00000631321 UBE2D2P62837 147 aa9.36□□□□□ -0.91
LINC00540-203ENST00000631321 NDUFA11Q86Y39 141 aa9.36□□□□□ -0.91
LINC00540-203ENST00000631321 PYGO1Q9Y3Y4 419 aa9.36□□□□□ -0.91
LINC00540-203ENST00000631321 USP9YO00507 2555 aaPredicted RBP9.36□□□□□ -0.91
LINC00540-203ENST00000631321 H3BMM0 161 aa9.36□□□□□ -0.91
LINC00540-203ENST00000631321 PTH2Q96A98 100 aa9.36□□□□□ -0.91
LINC00540-203ENST00000631321 J3QR89 54 aa9.35□□□□□ -0.91
LINC00540-203ENST00000631321 ZNF22P17026 224 aaPredicted RBP9.35□□□□□ -0.91
LINC00540-203ENST00000631321 LGALS3P17931 250 aaKnown RBP9.35□□□□□ -0.91
LINC00540-203ENST00000631321 DLX4Q92988 240 aaPredicted RBP9.35□□□□□ -0.91
LINC00540-203ENST00000631321 CRYBA4P53673 196 aa9.35□□□□□ -0.91
LINC00540-203ENST00000631321 SLURP1P55000 103 aa9.35□□□□□ -0.91
LINC00540-203ENST00000631321 DEFB131AP59861 70 aa9.35□□□□□ -0.91
LINC00540-203ENST00000631321 ETDBQ3ZM63 59 aa9.35□□□□□ -0.91
LINC00540-203ENST00000631321 SH2D6Q7Z4S9 175 aa9.35□□□□□ -0.91
LINC00540-203ENST00000631321 BEX4Q9NWD9 120 aaPredicted RBP9.35□□□□□ -0.91
LINC00540-203ENST00000631321 RBMY1BA6NDE4 496 aaKnown RBP9.34□□□□□ -0.91
LINC00540-203ENST00000631321 RBMY1EA6NEQ0 496 aaKnown RBP9.34□□□□□ -0.91
LINC00540-203ENST00000631321 RHODO00212 210 aa9.34□□□□□ -0.91
LINC00540-203ENST00000631321 RBMY1DP0C7P1 496 aaKnown RBP9.34□□□□□ -0.91
LINC00540-203ENST00000631321 CFC1BP0CG36 223 aa9.34□□□□□ -0.91
LINC00540-203ENST00000631321 CFC1P0CG37 223 aa9.34□□□□□ -0.91
LINC00540-203ENST00000631321 VCX2Q9H322 139 aa9.34□□□□□ -0.91
LINC00540-203ENST00000631321 DOPEY2Q9Y3R5 2298 aa9.34□□□□□ -0.91
LINC00540-203ENST00000631321 LYRM7Q5U5X0 104 aa9.34□□□□□ -0.91
LINC00540-203ENST00000631321 CFAP126Q5VTH2 177 aa9.34□□□□□ -0.91
LINC00540-203ENST00000631321 C18orf65Q6ZTR6 163 aa9.34□□□□□ -0.91
LINC00540-203ENST00000631321 FAM104AQ969W3 186 aa9.34□□□□□ -0.91
LINC00540-203ENST00000631321 A8MWV9 139 aa9.33□□□□□ -0.92
LINC00540-203ENST00000631321 M0R2P5 195 aa9.33□□□□□ -0.92
LINC00540-203ENST00000631321 APOMO95445 188 aa9.33□□□□□ -0.92
LINC00540-203ENST00000631321 LINC00467Q9BRT7 94 aa9.33□□□□□ -0.92
LINC00540-203ENST00000631321 FBN2P35556 2912 aa9.33□□□□□ -0.92
LINC00540-203ENST00000631321 MYO18BQ8IUG5 2567 aa9.33□□□□□ -0.92
LINC00540-203ENST00000631321 A0A0J9YXV3 536 aa9.32□□□□□ -0.92
LINC00540-203ENST00000631321 DEFB136Q30KP8 78 aa9.32□□□□□ -0.92
LINC00540-203ENST00000631321 C10orf126Q8N4M7 172 aa9.32□□□□□ -0.92
LINC00540-203ENST00000631321 ATP6V0E2Q8NHE4 81 aa9.32□□□□□ -0.92
LINC00540-203ENST00000631321 C4orf3Q8WVX3 66 aa9.32□□□□□ -0.92
LINC00540-203ENST00000631321 PEMTQ9UBM1 199 aa9.32□□□□□ -0.92
LINC00540-203ENST00000631321 ACACBO00763 2458 aa9.32□□□□□ -0.92
LINC00540-203ENST00000631321 CREBBPQ92793 2442 aa9.32□□□□□ -0.92
LINC00540-203ENST00000631321 SMCPP49901 116 aaPredicted RBP9.32□□□□□ -0.92
LINC00540-203ENST00000631321 PROK1P58294 105 aa9.31□□□□□ -0.92
LINC00540-203ENST00000631321 MRPS36P82909 103 aaKnown RBP9.31□□□□□ -0.92
LINC00540-203ENST00000631321 ZNF415Q09FC8 603 aa9.31□□□□□ -0.92
LINC00540-203ENST00000631321 TMEM61Q8N0U2 210 aa9.31□□□□□ -0.92
LINC00540-203ENST00000631321 MTURNQ8N3F0 131 aa9.31□□□□□ -0.92
LINC00540-203ENST00000631321 DUX3Q96PT4 197 aa9.31□□□□□ -0.92
LINC00540-203ENST00000631321 SPATA25Q9BR10 227 aa9.31□□□□□ -0.92
LINC00540-203ENST00000631321 CRYBG3Q68DQ2 2970 aa9.31□□□□□ -0.92
LINC00540-203ENST00000631321 ZANQ9Y493 2812 aa9.31□□□□□ -0.92
LINC00540-203ENST00000631321 LOC107984156A0A0G2JMH3 177 aa9.31□□□□□ -0.92
LINC00540-203ENST00000631321 ARL17AQ8IVW1 177 aa9.31□□□□□ -0.92
LINC00540-203ENST00000631321 TSSC4Q9Y5U2 329 aaPredicted RBP9.31□□□□□ -0.92
LINC00540-203ENST00000631321 CSMD2Q7Z408 3487 aa9.3□□□□□ -0.92
LINC00540-203ENST00000631321 TRBV20-1A0A075B6N2 111 aa9.3□□□□□ -0.92
LINC00540-203ENST00000631321 IGHV3-73A0A0B4J1V6 119 aa9.3□□□□□ -0.92
LINC00540-203ENST00000631321 PRO1854Q9UHT4 67 aa9.3□□□□□ -0.92
LINC00540-203ENST00000631321 TNFRSF18Q9Y5U5 241 aa9.3□□□□□ -0.92
LINC00540-203ENST00000631321 ANKRD17O75179 2603 aaKnown RBP9.3□□□□□ -0.92
LINC00540-203ENST00000631321 SORL1Q92673 2214 aa9.3□□□□□ -0.92
LINC00540-203ENST00000631321 GAGE12HA6NDE8 117 aa9.3□□□□□ -0.92
LINC00540-203ENST00000631321 CD28P10747 220 aa9.3□□□□□ -0.92
LINC00540-203ENST00000631321 HTN1P15515 57 aa9.3□□□□□ -0.92
LINC00540-203ENST00000631321 PSMB2P49721 201 aa9.3□□□□□ -0.92
LINC00540-203ENST00000631321 LRRC75A-AS1Q8N1F1 130 aa9.3□□□□□ -0.92
LINC00540-203ENST00000631321 C1QTNF4Q9BXJ3 329 aa9.3□□□□□ -0.92
LINC00540-203ENST00000631321 MAP6D1Q9H9H5 199 aa9.3□□□□□ -0.92
LINC00540-203ENST00000631321 UTP20O75691 2785 aaKnown RBP9.29□□□□□ -0.92
LINC00540-203ENST00000631321 BEAN1Q3B7T3 259 aa9.29□□□□□ -0.92
LINC00540-203ENST00000631321 Q6ZSN1 163 aa9.29□□□□□ -0.92
LINC00540-203ENST00000631321 C11orf72Q8NBR9 251 aa9.29□□□□□ -0.92
LINC00540-203ENST00000631321 SIGMAR1Q99720 223 aa9.29□□□□□ -0.92
LINC00540-203ENST00000631321 CHCHD7Q9BUK0 85 aa9.29□□□□□ -0.92
LINC00540-203ENST00000631321 PRRC2AP48634 2157 aaKnown RBP9.29□□□□□ -0.92
LINC00540-203ENST00000631321 A0A0B4J2C4 111 aa9.29□□□□□ -0.92
LINC00540-203ENST00000631321 DEFB113Q30KQ7 82 aa9.29□□□□□ -0.92
LINC00540-203ENST00000631321 SBSPONQ8IVN8 264 aa9.29□□□□□ -0.92
LINC00540-203ENST00000631321 SPANXA1Q9NS26 97 aa9.29□□□□□ -0.92
LINC00540-203ENST00000631321 A4D1N5 150 aa9.28□□□□□ -0.92
LINC00540-203ENST00000631321 TMEM238C9JI98 176 aa9.28□□□□□ -0.92
LINC00540-203ENST00000631321 EIF4EBP3O60516 100 aaPredicted RBP9.28□□□□□ -0.92
LINC00540-203ENST00000631321 SCGB1A1P11684 91 aa9.28□□□□□ -0.92
LINC00540-203ENST00000631321 DEFB114Q30KQ6 69 aa9.28□□□□□ -0.92
LINC00540-203ENST00000631321 DNAJC30Q96LL9 226 aa9.28□□□□□ -0.92
LINC00540-203ENST00000631321 CLUHP3Q96NS8 147 aa9.28□□□□□ -0.92
LINC00540-203ENST00000631321 SPXQ9BT56 116 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 79.4 ms