RNA–Protein interactions for RNA: ENST00000615540.4

PDLIM5-222, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 6,219 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-222ENST00000615540 ODF1Q14990 250 aa6.72□□□□□ -1.33
PDLIM5-222ENST00000615540 TTC32Q5I0X7 151 aa6.72□□□□□ -1.33
PDLIM5-222ENST00000615540 LEPROTO15243 131 aa6.72□□□□□ -1.33
PDLIM5-222ENST00000615540 PROK1P58294 105 aa6.72□□□□□ -1.33
PDLIM5-222ENST00000615540 SS18Q15532 418 aa6.72□□□□□ -1.33
PDLIM5-222ENST00000615540 CACNA1HO95180 2353 aa6.71□□□□□ -1.33
PDLIM5-222ENST00000615540 LINC00310P59036 64 aa6.71□□□□□ -1.33
PDLIM5-222ENST00000615540 DAND5Q8N907 189 aa6.71□□□□□ -1.33
PDLIM5-222ENST00000615540 F8W735 103 aaPredicted RBP6.71□□□□□ -1.34
PDLIM5-222ENST00000615540 FXYD2P54710 66 aa6.71□□□□□ -1.34
PDLIM5-222ENST00000615540 OCIAD2Q56VL3 154 aa6.71□□□□□ -1.34
PDLIM5-222ENST00000615540 SPAG8Q99932 426 aaPredicted RBP6.71□□□□□ -1.34
PDLIM5-222ENST00000615540 A0A0J9YXV3 536 aa6.71□□□□□ -1.34
PDLIM5-222ENST00000615540 MRPS12O15235 138 aaKnown RBP6.71□□□□□ -1.34
PDLIM5-222ENST00000615540 SIVA1O15304 175 aa6.71□□□□□ -1.34
PDLIM5-222ENST00000615540 GTSF1LQ9H1H1 148 aa6.7□□□□□ -1.34
PDLIM5-222ENST00000615540 WNK2Q9Y3S1 2297 aa6.7□□□□□ -1.34
PDLIM5-222ENST00000615540 RHOHQ15669 191 aa6.7□□□□□ -1.34
PDLIM5-222ENST00000615540 PSMB8P28062 276 aa6.7□□□□□ -1.34
PDLIM5-222ENST00000615540 XCL1P47992 114 aa6.7□□□□□ -1.34
PDLIM5-222ENST00000615540 C2orf82Q6UX34 121 aa6.7□□□□□ -1.34
PDLIM5-222ENST00000615540 DEFB125Q8N687 156 aa6.7□□□□□ -1.34
PDLIM5-222ENST00000615540 NXPH4O95158 308 aa6.7□□□□□ -1.34
PDLIM5-222ENST00000615540 S100A7L2Q5SY68 101 aa6.7□□□□□ -1.34
PDLIM5-222ENST00000615540 TAX1BP3O14907 124 aa6.69□□□□□ -1.34
PDLIM5-222ENST00000615540 MRAPQ8TCY5 172 aa6.69□□□□□ -1.34
PDLIM5-222ENST00000615540 U3KQK5 164 aa6.69□□□□□ -1.34
PDLIM5-222ENST00000615540 CRLF1O75462 422 aa6.69□□□□□ -1.34
PDLIM5-222ENST00000615540 MED13LQ71F56 2210 aa6.69□□□□□ -1.34
PDLIM5-222ENST00000615540 OTOGLQ3ZCN5 2332 aa6.69□□□□□ -1.34
PDLIM5-222ENST00000615540 ZFAND2AQ8N6M9 145 aa6.69□□□□□ -1.34
PDLIM5-222ENST00000615540 SIGMAR1Q99720 223 aa6.69□□□□□ -1.34
PDLIM5-222ENST00000615540 C11orf86A6NJI1 115 aa6.69□□□□□ -1.34
PDLIM5-222ENST00000615540 FGF6P10767 208 aa6.69□□□□□ -1.34
PDLIM5-222ENST00000615540 C16orf74Q96GX8 76 aa6.69□□□□□ -1.34
PDLIM5-222ENST00000615540 TET2Q6N021 2002 aaPredicted RBP6.69□□□□□ -1.34
PDLIM5-222ENST00000615540 SCGB1A1P11684 91 aa6.69□□□□□ -1.34
PDLIM5-222ENST00000615540 APOC4P55056 127 aa6.69□□□□□ -1.34
PDLIM5-222ENST00000615540 K7EP13 123 aa6.68□□□□□ -1.34
PDLIM5-222ENST00000615540 TMEM89A2RUT3 159 aa6.68□□□□□ -1.34
PDLIM5-222ENST00000615540 MED14OSP0DP75 135 aa6.68□□□□□ -1.34
PDLIM5-222ENST00000615540 Q6ZSV7 163 aa6.68□□□□□ -1.34
PDLIM5-222ENST00000615540 Q9H8V8 135 aa6.68□□□□□ -1.34
PDLIM5-222ENST00000615540 CSMD2Q7Z408 3487 aa6.67□□□□□ -1.34
PDLIM5-222ENST00000615540 TTC28Q96AY4 2481 aa6.67□□□□□ -1.34
PDLIM5-222ENST00000615540 GYPEP15421 78 aa6.67□□□□□ -1.34
PDLIM5-222ENST00000615540 MUSTN1Q8IVN3 82 aa6.67□□□□□ -1.34
PDLIM5-222ENST00000615540 URB1-AS1Q96HZ7 61 aa6.67□□□□□ -1.34
PDLIM5-222ENST00000615540 WFDC10AQ9H1F0 79 aa6.67□□□□□ -1.34
PDLIM5-222ENST00000615540 C10orf126Q8N4M7 172 aa6.67□□□□□ -1.34
PDLIM5-222ENST00000615540 IGLV10-54A0A075B6I4 117 aa6.67□□□□□ -1.34
PDLIM5-222ENST00000615540 TRAV12-1A0A0B4J245 112 aa6.67□□□□□ -1.34
PDLIM5-222ENST00000615540 IGLV1-40P01703 118 aa6.67□□□□□ -1.34
PDLIM5-222ENST00000615540 HERVK_113P63121 156 aa6.67□□□□□ -1.34
PDLIM5-222ENST00000615540 TMEM86BQ8N661 226 aa6.67□□□□□ -1.34
PDLIM5-222ENST00000615540 K7EQG2 157 aa6.67□□□□□ -1.34
PDLIM5-222ENST00000615540 ANGP03950 147 aaKnown RBP6.67□□□□□ -1.34
PDLIM5-222ENST00000615540 LRRC75A-AS1Q8N1F1 130 aa6.67□□□□□ -1.34
PDLIM5-222ENST00000615540 ATMQ13315 3056 aa6.66□□□□□ -1.34
PDLIM5-222ENST00000615540 IGLL5B9A064 214 aa6.66□□□□□ -1.34
PDLIM5-222ENST00000615540 INAFM1C9JVW0 142 aa6.66□□□□□ -1.34
PDLIM5-222ENST00000615540 DEFB135Q30KP9 77 aa6.66□□□□□ -1.34
PDLIM5-222ENST00000615540 LGALS9O00182 355 aa6.66□□□□□ -1.34
PDLIM5-222ENST00000615540 UBE2DNLQ8IWF7 75 aa6.66□□□□□ -1.34
PDLIM5-222ENST00000615540 BOD1L2Q8IYS8 172 aa6.66□□□□□ -1.34
PDLIM5-222ENST00000615540 PRO1854Q9UHT4 67 aa6.66□□□□□ -1.34
PDLIM5-222ENST00000615540 DEFB114Q30KQ6 69 aa6.66□□□□□ -1.34
PDLIM5-222ENST00000615540 Q6ZTI0 123 aa6.66□□□□□ -1.34
PDLIM5-222ENST00000615540 C5orf38Q86SI9 138 aa6.66□□□□□ -1.34
PDLIM5-222ENST00000615540 TAL2Q16559 108 aa6.65□□□□□ -1.34
PDLIM5-222ENST00000615540 IGKV2D-26A0A0A0MRZ7 120 aa6.65□□□□□ -1.34
PDLIM5-222ENST00000615540 RNASE3P12724 160 aaKnown RBP6.65□□□□□ -1.34
PDLIM5-222ENST00000615540 Q6ZUT4 128 aa6.65□□□□□ -1.34
PDLIM5-222ENST00000615540 DSPP15924 2871 aaKnown RBP6.65□□□□□ -1.34
PDLIM5-222ENST00000615540 ETDBQ3ZM63 59 aa6.65□□□□□ -1.34
PDLIM5-222ENST00000615540 C9orf66Q5T8R8 295 aa6.65□□□□□ -1.34
PDLIM5-222ENST00000615540 COL27A1Q8IZC6 1860 aaPredicted RBP6.65□□□□□ -1.34
PDLIM5-222ENST00000615540 Q8N976 141 aa6.65□□□□□ -1.34
PDLIM5-222ENST00000615540 VPS13CQ709C8 3753 aa6.65□□□□□ -1.34
PDLIM5-222ENST00000615540 H3BMM0 161 aa6.65□□□□□ -1.35
PDLIM5-222ENST00000615540 NACAE9PAV3 2078 aa6.65□□□□□ -1.35
PDLIM5-222ENST00000615540 MAPKAPK5-AS1Q8N8E1 139 aa6.64□□□□□ -1.35
PDLIM5-222ENST00000615540 NRACQ8N912 160 aa6.64□□□□□ -1.35
PDLIM5-222ENST00000615540 SH2D6Q7Z4S9 175 aa6.64□□□□□ -1.35
PDLIM5-222ENST00000615540 NFE4Q86UQ8 179 aa6.64□□□□□ -1.35
PDLIM5-222ENST00000615540 DNAJC30Q96LL9 226 aa6.64□□□□□ -1.35
PDLIM5-222ENST00000615540 TRBV7-3A0A075B6L6 115 aa6.64□□□□□ -1.35
PDLIM5-222ENST00000615540 IGHV3-30P01768 117 aa6.64□□□□□ -1.35
PDLIM5-222ENST00000615540 IGHV3-33P01772 117 aa6.64□□□□□ -1.35
PDLIM5-222ENST00000615540 IGHV3-30-3P0DP02 117 aa6.64□□□□□ -1.35
PDLIM5-222ENST00000615540 IGHV3-30-5P0DP03 117 aa6.64□□□□□ -1.35
PDLIM5-222ENST00000615540 NEXN-AS1Q8NBZ9 246 aa6.64□□□□□ -1.35
PDLIM5-222ENST00000615540 GAGE2AQ6NT46 116 aa6.64□□□□□ -1.35
PDLIM5-222ENST00000615540 DCANP1Q8TF63 244 aa6.64□□□□□ -1.35
PDLIM5-222ENST00000615540 PIFOQ8TCI5 191 aa6.63□□□□□ -1.35
PDLIM5-222ENST00000615540 LINC00467Q9BRT7 94 aa6.63□□□□□ -1.35
PDLIM5-222ENST00000615540 SPANXA1Q9NS26 97 aa6.63□□□□□ -1.35
PDLIM5-222ENST00000615540 RNF152Q8N8N0 203 aa6.63□□□□□ -1.35
PDLIM5-222ENST00000615540 PSMG3-AS1Q96PY0 264 aa6.63□□□□□ -1.35
PDLIM5-222ENST00000615540 LINC00482Q8N8I6 264 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms