RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 RPL36AP83881 106 aaKnown RBP9.63□□□□□ -0.87
SHKBP1-217ENST00000598558 C1orf134Q5TEV5 83 aa9.63□□□□□ -0.87
SHKBP1-217ENST00000598558 GATD1Q8NB37 220 aa9.63□□□□□ -0.87
SHKBP1-217ENST00000598558 RPL36ALQ969Q0 106 aaKnown RBP9.63□□□□□ -0.87
SHKBP1-217ENST00000598558 A0A1B0GUT8 65 aa9.62□□□□□ -0.87
SHKBP1-217ENST00000598558 LINC00862A6NCI5 91 aa9.62□□□□□ -0.87
SHKBP1-217ENST00000598558 OR10J3Q5JRS4 329 aa9.62□□□□□ -0.87
SHKBP1-217ENST00000598558 COMMD7Q86VX2 200 aa9.62□□□□□ -0.87
SHKBP1-217ENST00000598558 C6orf223Q8N319 242 aa9.62□□□□□ -0.87
SHKBP1-217ENST00000598558 UQCC3Q6UW78 93 aa9.61□□□□□ -0.87
SHKBP1-217ENST00000598558 NTM-AS1Q6ZSK4 140 aa9.61□□□□□ -0.87
SHKBP1-217ENST00000598558 RNF185Q96GF1 192 aa9.61□□□□□ -0.87
SHKBP1-217ENST00000598558 TRAV8-6A0A0B4J262 113 aa9.6□□□□□ -0.87
SHKBP1-217ENST00000598558 RASL11AQ6T310 242 aa9.6□□□□□ -0.87
SHKBP1-217ENST00000598558 DEFB104AQ8WTQ1 72 aa9.6□□□□□ -0.87
SHKBP1-217ENST00000598558 NAT8BQ9UHF3 227 aa9.6□□□□□ -0.87
SHKBP1-217ENST00000598558 A0A1B0GVY2 172 aa9.59□□□□□ -0.87
SHKBP1-217ENST00000598558 IGHV3-30P01768 117 aa9.59□□□□□ -0.87
SHKBP1-217ENST00000598558 IGHV3-33P01772 117 aa9.59□□□□□ -0.87
SHKBP1-217ENST00000598558 IGHV3-30-3P0DP02 117 aa9.59□□□□□ -0.87
SHKBP1-217ENST00000598558 IGHV3-30-5P0DP03 117 aa9.59□□□□□ -0.87
SHKBP1-217ENST00000598558 TNP2Q05952 138 aa9.59□□□□□ -0.87
SHKBP1-217ENST00000598558 TTC32Q5I0X7 151 aa9.59□□□□□ -0.87
SHKBP1-217ENST00000598558 LINC01556Q5JQF7 62 aa9.59□□□□□ -0.87
SHKBP1-217ENST00000598558 Q6ZRN7 208 aaPredicted RBP9.59□□□□□ -0.87
SHKBP1-217ENST00000598558 RPL39LQ96EH5 51 aaKnown RBP9.59□□□□□ -0.87
SHKBP1-217ENST00000598558 TMEM191AQ9H0A3 160 aa9.59□□□□□ -0.87
SHKBP1-217ENST00000598558 NIT2Q9NQR4 276 aa9.59□□□□□ -0.87
SHKBP1-217ENST00000598558 PRSS29PA6NIE9 313 aa9.58□□□□□ -0.88
SHKBP1-217ENST00000598558 RAB4AP20338 218 aa9.58□□□□□ -0.88
SHKBP1-217ENST00000598558 RIGQ13278 110 aa9.58□□□□□ -0.88
SHKBP1-217ENST00000598558 AMN1Q8IY45 258 aa9.58□□□□□ -0.88
SHKBP1-217ENST00000598558 DNAJC30Q96LL9 226 aa9.58□□□□□ -0.88
SHKBP1-217ENST00000598558 A0A087WWC5 75 aa9.57□□□□□ -0.88
SHKBP1-217ENST00000598558 TRBV6-8A0A0A6YYG3 113 aa9.57□□□□□ -0.88
SHKBP1-217ENST00000598558 F8W036 122 aa9.57□□□□□ -0.88
SHKBP1-217ENST00000598558 PNRC1Q12796 327 aaPredicted RBP9.57□□□□□ -0.88
SHKBP1-217ENST00000598558 LINC00336Q6ZUF6 198 aa9.57□□□□□ -0.88
SHKBP1-217ENST00000598558 DAZ4Q86SG3 579 aaKnown RBP9.57□□□□□ -0.88
SHKBP1-217ENST00000598558 NIT1Q86X76 327 aa9.57□□□□□ -0.88
SHKBP1-217ENST00000598558 BORCS7Q96B45 105 aa9.57□□□□□ -0.88
SHKBP1-217ENST00000598558 DAZ3Q9NR90 486 aaKnown RBP9.57□□□□□ -0.88
SHKBP1-217ENST00000598558 DNAH11Q96DT5 4516 aa9.57□□□□□ -0.88
SHKBP1-217ENST00000598558 A0A1B0GXF2 115 aa9.56□□□□□ -0.88
SHKBP1-217ENST00000598558 SMKR1H3BMG3 65 aa9.56□□□□□ -0.88
SHKBP1-217ENST00000598558 H7C1H1 209 aa9.56□□□□□ -0.88
SHKBP1-217ENST00000598558 MRPL54Q6P161 138 aaKnown RBP9.56□□□□□ -0.88
SHKBP1-217ENST00000598558 SMIM15Q7Z3B0 74 aa9.56□□□□□ -0.88
SHKBP1-217ENST00000598558 PKD1P98161 4303 aa9.55□□□□□ -0.88
SHKBP1-217ENST00000598558 BIRC6Q9NR09 4857 aa9.55□□□□□ -0.88
SHKBP1-217ENST00000598558 IBA57-AS1B1ANH7 110 aa9.55□□□□□ -0.88
SHKBP1-217ENST00000598558 PPP1R2P9O14990 202 aa9.55□□□□□ -0.88
SHKBP1-217ENST00000598558 RPS10P46783 165 aaKnown RBP9.55□□□□□ -0.88
SHKBP1-217ENST00000598558 CAMPP49913 170 aa9.55□□□□□ -0.88
SHKBP1-217ENST00000598558 C10orf91Q5T1B1 145 aa9.55□□□□□ -0.88
SHKBP1-217ENST00000598558 SEC11CQ9BY50 192 aa9.55□□□□□ -0.88
SHKBP1-217ENST00000598558 TRAV9-2A0A087WT02 112 aa9.54□□□□□ -0.88
SHKBP1-217ENST00000598558 MT-ND4LP03901 98 aa9.54□□□□□ -0.88
SHKBP1-217ENST00000598558 ANAPC16Q96DE5 110 aa9.54□□□□□ -0.88
SHKBP1-217ENST00000598558 HECTD4Q9Y4D8 3996 aa9.54□□□□□ -0.88
SHKBP1-217ENST00000598558 NCR2O95944 276 aa9.53□□□□□ -0.88
SHKBP1-217ENST00000598558 MRPL51Q4U2R6 128 aaKnown RBP9.53□□□□□ -0.88
SHKBP1-217ENST00000598558 FAM104BQ5XKR9 115 aa9.53□□□□□ -0.88
SHKBP1-217ENST00000598558 TRBV6-5A0A0K0K1A5 114 aa9.52□□□□□ -0.89
SHKBP1-217ENST00000598558 K7EP13 123 aa9.52□□□□□ -0.89
SHKBP1-217ENST00000598558 BTF3P20290 206 aaKnown RBP9.52□□□□□ -0.89
SHKBP1-217ENST00000598558 IQCJQ1A5X6 159 aa9.52□□□□□ -0.89
SHKBP1-217ENST00000598558 NRACQ8N912 160 aa9.52□□□□□ -0.89
SHKBP1-217ENST00000598558 FRZBQ92765 325 aa9.52□□□□□ -0.89
SHKBP1-217ENST00000598558 SDHAF1A6NFY7 115 aa9.51□□□□□ -0.89
SHKBP1-217ENST00000598558 HBBP68871 147 aa9.51□□□□□ -0.89
SHKBP1-217ENST00000598558 GAGE6Q13070 117 aa9.51□□□□□ -0.89
SHKBP1-217ENST00000598558 MPV17L2Q567V2 206 aa9.51□□□□□ -0.89
SHKBP1-217ENST00000598558 ATRAIDQ6UW56 229 aa9.51□□□□□ -0.89
SHKBP1-217ENST00000598558 C10orf126Q8N4M7 172 aa9.51□□□□□ -0.89
SHKBP1-217ENST00000598558 Q8N976 141 aa9.51□□□□□ -0.89
SHKBP1-217ENST00000598558 CHCHD5Q9BSY4 110 aa9.51□□□□□ -0.89
SHKBP1-217ENST00000598558 Q9HAA7 133 aa9.51□□□□□ -0.89
SHKBP1-217ENST00000598558 CARHSP1Q9Y2V2 147 aaKnown RBP9.51□□□□□ -0.89
SHKBP1-217ENST00000598558 TMEM262E9PQX1 116 aa9.5□□□□□ -0.89
SHKBP1-217ENST00000598558 POLR2KP53803 58 aaKnown RBP9.5□□□□□ -0.89
SHKBP1-217ENST00000598558 MRAP2Q96G30 205 aa9.5□□□□□ -0.89
SHKBP1-217ENST00000598558 KLK12Q9UKR0 248 aa9.5□□□□□ -0.89
SHKBP1-217ENST00000598558 IGHV1-24A0A0C4DH33 117 aa9.49□□□□□ -0.89
SHKBP1-217ENST00000598558 A0A1B0GW15 77 aa9.49□□□□□ -0.89
SHKBP1-217ENST00000598558 TMEM97Q5BJF2 176 aa9.49□□□□□ -0.89
SHKBP1-217ENST00000598558 TMEM70Q9BUB7 260 aa9.49□□□□□ -0.89
SHKBP1-217ENST00000598558 DYNC1H1Q14204 4646 aaKnown RBP9.49□□□□□ -0.89
SHKBP1-217ENST00000598558 TRBV25-1A0A075B6N4 114 aa9.48□□□□□ -0.89
SHKBP1-217ENST00000598558 A0A087WX48 190 aa9.48□□□□□ -0.89
SHKBP1-217ENST00000598558 C7orf77A4D0Y5 90 aa9.48□□□□□ -0.89
SHKBP1-217ENST00000598558 RBX1P62877 108 aa9.48□□□□□ -0.89
SHKBP1-217ENST00000598558 COTL1Q14019 142 aa9.48□□□□□ -0.89
SHKBP1-217ENST00000598558 ENHOQ6UWT2 76 aa9.48□□□□□ -0.89
SHKBP1-217ENST00000598558 ATP5L2Q7Z4Y8 100 aa9.48□□□□□ -0.89
SHKBP1-217ENST00000598558 NFE4Q86UQ8 179 aa9.48□□□□□ -0.89
SHKBP1-217ENST00000598558 MAPKAPK5-AS1Q8N8E1 139 aa9.48□□□□□ -0.89
SHKBP1-217ENST00000598558 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.48□□□□□ -0.89
SHKBP1-217ENST00000598558 CLRN3Q8NCR9 226 aa9.48□□□□□ -0.89
SHKBP1-217ENST00000598558 ST20Q9HBF5 79 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms